[2018-01-24T16:56:48.362695Z] + . /Volumes/PS1/lsstsw/eups/2.1.3/bin/setups.sh [2018-01-24T16:56:48.363169Z] ++ export EUPS_SHELL=sh [2018-01-24T16:56:48.363212Z] ++ EUPS_SHELL=sh [2018-01-24T16:56:48.363281Z] ++ export EUPS_DIR=/Volumes/PS1/lsstsw/eups/2.1.3 [2018-01-24T16:56:48.363349Z] ++ EUPS_DIR=/Volumes/PS1/lsstsw/eups/2.1.3 [2018-01-24T16:56:48.364158Z] +++ echo /Volumes/PS1/lsstsw/eups/2.1.3 [2018-01-24T16:56:48.364375Z] +++ sed -e 's/ /-+-/g' [2018-01-24T16:56:48.367480Z] ++ eupslocalpath=/Volumes/PS1/lsstsw/eups/2.1.3 [2018-01-24T16:56:48.368259Z] +++ /Volumes/PS1/lsstsw/miniconda/bin/python -E -c ' [2018-01-24T16:56:48.368347Z] from __future__ import print_function [2018-01-24T16:56:48.368374Z] import sys [2018-01-24T16:56:48.368399Z] pp = [] [2018-01-24T16:56:48.368449Z] for d in sys.argv[1].split(":"): [2018-01-24T16:56:48.368494Z] if d and d not in pp: [2018-01-24T16:56:48.368526Z] pp += [d] [2018-01-24T16:56:48.368567Z] if not sys.argv[2] in pp: [2018-01-24T16:56:48.368609Z] pp = [sys.argv[2]] + pp [2018-01-24T16:56:48.368701Z] print(":".join(pp))' /Users/wmwv/lsstsw/stack /Volumes/PS1/lsstsw/stack [2018-01-24T16:56:48.389555Z] ++ export EUPS_PATH=/Volumes/PS1/lsstsw/stack:/Users/wmwv/lsstsw/stack [2018-01-24T16:56:48.389653Z] ++ EUPS_PATH=/Volumes/PS1/lsstsw/stack:/Users/wmwv/lsstsw/stack [2018-01-24T16:56:48.389744Z] ++ _eups_path=/Volumes/PS1/lsstsw/stack:/Users/wmwv/lsstsw/stack [2018-01-24T16:56:48.390548Z] +++ /Volumes/PS1/lsstsw/eups/2.1.3/bin/eups_setup DYLD_LIBRARY_PATH= eups -r /Volumes/PS1/lsstsw/eups/2.1.3 [2018-01-24T16:56:50.453932Z] ++ eval export 'SETUP_EUPS='\''eups' LOCAL:/Volumes/PS1/lsstsw/eups/2.1.3 -f DarwinX86 -Z '(none)'\'';' export 'PATH=/Volumes/PS1/lsstsw/eups/2.1.3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/treecorr/3.2.3.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_base/master-g24db930f3a+9/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_drp/master-g93314e9430/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/verify/master-ga204a195d9+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_monocam/13.0-4-gd513ce3+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_subaru/13.0-49-gcb35f37b+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_decam/13.0-24-g3127c16/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_ctio0m9/master-g0929698575/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_comCam/master-gd11fa75b98/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_cfht/13.0-14-g5d31639/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/mpich/3.2.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_pool/13.0-6-gf96f8ec+30/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_drivers/13.0-21-g61c0bd4/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/tmv/0.73.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/cat/13.0-3-gcebd4ec+17/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/bin/sst:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_orca/13.0-4-gfa178eb+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_execute/13.0-5-g1b5eec6+9/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/psfex/12.0+23/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_psfex/13.0-5-gd2c5893+35/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/xpa/2.1.15.lsst3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_sdss/13.0-11-g49fd657+5/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_lsstSim/13.0-17-gf21e97d/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pykg_config/1.3.0+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_isr/13.0-15-g0af5a6c+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_astrometryNet/master-gb035c22750+13/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/astrometry_net/0.67.123ff3e.lsst1+3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_astrom/13.0-16-g30f6da5+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_tasks/13.0-66-gfbf2f2ce+2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_modelfit/13.0-11-g2fa83af+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_base/13.0-33-gb1a1d47+2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g6ab8ff23d8/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/1.16.lsst3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst4-1-gf398627/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/13.0-4-gbcd7061+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pyyaml/3.11.lsst1-2-g6ae2b7a/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/13.0-2-g4b114ac+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/apr_util/1.5.4/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/apr/1.5.2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/python_psutil/4.1.0+3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/doxygen/1.8.13.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pep8_naming/0.4.1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pyflakes/1.5.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/flake8/3.3.0.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest/3.2.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/python_future/0.16.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/scons/3.0.0.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/sconsUtils/13.0-13-g8d9cf34+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/afw/13.0-109-g62eb66483/bin:/Users/wmwv/lsstsw/lsst_build/bin:/Users/wmwv/lsstsw/bin:/Users/wmwv/lsstsw/lfs/bin:/Users/wmwv/lsstsw/miniconda/bin:/Volumes/data/Wanalysis/literature/SFD98/bin.macosx:/Users/wmwv/Wanalysis/code/LCfit/python:/Users/wmwv/Wanalysis/code/Cosmology/python:/Users/wmwv/local/bin:/Users/wmwv/local/python:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Library/WebServer/Documents/bin:/Applications/itt/idl/bin:/usr/local/opt/go/libexec/bin:/Users/wmwv/go/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/jointcal/master-gc5b79683b0/bin;' export 'PYTHONPATH=/Volumes/PS1/lsstsw/eups/2.1.3/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ci_ctio0m9/master-gbe69b68c0a/python:/Volumes/PS1/lsstsw/stack/DarwinX86/treecorr/3.2.3.lsst2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_base/master-g24db930f3a+9/python:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_drp/master-g93314e9430/python:/Volumes/PS1/lsstsw/stack/DarwinX86/verify_metrics/master-gefb3fcf52b+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/requests/2.9.1.lsst1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/verify/master-ga204a195d9+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/jointcal/master-gc5b79683b0/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_monocam/13.0-4-gd513ce3+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_subaru/13.0-49-gcb35f37b+1/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_decam/13.0-24-g3127c16/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_ctio0m9/master-g0929698575/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_comCam/master-gd11fa75b98/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_cfht/13.0-14-g5d31639/python:/Volumes/PS1/lsstsw/stack/DarwinX86/mpi4py/2.0.0+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_pool/13.0-6-gf96f8ec+30/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_drivers/13.0-21-g61c0bd4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_shapeHSM/13.0-9-g1922b1c+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_photometryKron/13.0-7-g30344f0+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/sqlalchemy/1.0.8.lsst3+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/db/13.0-2-g5a74774+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/cat/13.0-3-gcebd4ec+17/python:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/bin/sst:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_orca/13.0-4-gfa178eb+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_execute/13.0-5-g1b5eec6+9/python:/Volumes/PS1/lsstsw/stack/DarwinX86/psfex/12.0+23/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_psfex/13.0-5-gd2c5893+35/python:/Volumes/PS1/lsstsw/stack/DarwinX86/display_ds9/13.0-2-g6174d4c+51/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_simpleShape/13.0-7-ge993229+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_sdss/13.0-11-g49fd657+5/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_mysqlclient/1.3.7.lsst1+9/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_lsstSim/13.0-17-gf21e97d/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pykg_config/1.3.0+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/healpy/1.10.3.lsst1+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/skymap/13.0-5-g2a40766+12/python:/Volumes/PS1/lsstsw/stack/DarwinX86/coadd_chisquared/13.0-3-g3542790+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/lmfit/0.9.3+5/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_diffim/13.0-28-gf4bc96c+4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_isr/13.0-15-g0af5a6c+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_astrometryNet/master-gb035c22750+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/astrometry_net/0.67.123ff3e.lsst1+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_astrom/13.0-16-g30f6da5+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_tasks/13.0-66-gfbf2f2ce+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/shapelet/13.0-6-ge6e5c2d+10/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_modelfit/13.0-11-g2fa83af+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/stsci_distutils/0.3.7.lsst1+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_d2to1/0.2.12.lsst2+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyfits/3.4.0+8/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/geom/13.0-1-g7257b6a+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/skypix/13.0+87/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_base/13.0-55-gb064ced/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_test/13.0-14-g7685640/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_base/13.0-14-g8b3bf66+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/coadd_utils/13.0-4-g4231ded+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_base/13.0-33-gb1a1d47+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/esutil/0.6.0+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_algorithms/13.0-24-g22030a45+4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/master-g139ee105a0+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.0-4-g0cefb59+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/13.0-4-gbcd7061+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyyaml/3.11.lsst1-2-g6ae2b7a/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/13.0-2-g4b114ac+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/log/13.0-7-g73c05b9+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/13.0-40-g460649b+5/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_psutil/4.1.0+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/13.0-3-g13ef843+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_session2file/0.1.9/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_execnet/1.4.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_forked/0.2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_xdist/1.19.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pep8_naming/0.4.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyflakes/1.5.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pycodestyle/2.3.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_mccabe/0.6.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/flake8/3.3.0.lsst1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_flake8/0.8.1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest/3.2.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_future/0.16.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/sconsUtils/13.0-13-g8d9cf34+1/python:/Volumes/PS1/lsstsw/stack/DarwinX86/base/13.0-12-g6586b4b+3/python:/Volumes/PS1/lsstsw/stack/DarwinX86/utils/13.0-12-gac01bb5+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/13.0-5-g99bcfa4+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/afw/13.0-109-g62eb66483/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_deblender/13.0-13-g8b7e855+11/python:/Users/wmwv/lsstsw/lsst_build/python:/Users/wmwv/local/lib/python/site-packages:/Users/wmwv/local/python:/Users/wmwv/Wanalysis/code/LCfit/python:/Users/wmwv/Wanalysis/code/Cosmology/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_convolved/master-gaffd610453+13/python;' export 'EUPS_PATH=/Users/wmwv/lsstsw/stack:/Volumes/PS1/lsstsw/stack;' 'setup()' '{' eval '`"/Volumes/PS1/lsstsw/eups/2.1.3/bin/eups_setup"' 'DYLD_LIBRARY_PATH="${DYLD_LIBRARY_PATH}"' '"$@"`' ';' '};' 'unsetup()' '{' eval '`"/Volumes/PS1/lsstsw/eups/2.1.3/bin/eups_setup"' 'DYLD_LIBRARY_PATH="${DYLD_LIBRARY_PATH}"' --unsetup '"$@"`' ';' '}' [2018-01-24T16:56:50.454226Z] +++ export 'SETUP_EUPS=eups LOCAL:/Volumes/PS1/lsstsw/eups/2.1.3 -f DarwinX86 -Z (none)' [2018-01-24T16:56:50.454340Z] +++ SETUP_EUPS='eups LOCAL:/Volumes/PS1/lsstsw/eups/2.1.3 -f DarwinX86 -Z (none)' [2018-01-24T16:56:50.458860Z] +++ export PATH=/Volumes/PS1/lsstsw/eups/2.1.3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/treecorr/3.2.3.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_base/master-g24db930f3a+9/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_drp/master-g93314e9430/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/verify/master-ga204a195d9+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_monocam/13.0-4-gd513ce3+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_subaru/13.0-49-gcb35f37b+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_decam/13.0-24-g3127c16/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_ctio0m9/master-g0929698575/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_comCam/master-gd11fa75b98/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_cfht/13.0-14-g5d31639/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/mpich/3.2.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_pool/13.0-6-gf96f8ec+30/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_drivers/13.0-21-g61c0bd4/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/tmv/0.73.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/cat/13.0-3-gcebd4ec+17/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/bin/sst:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_orca/13.0-4-gfa178eb+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_execute/13.0-5-g1b5eec6+9/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/psfex/12.0+23/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_psfex/13.0-5-gd2c5893+35/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/xpa/2.1.15.lsst3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_sdss/13.0-11-g49fd657+5/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_lsstSim/13.0-17-gf21e97d/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pykg_config/1.3.0+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_isr/13.0-15-g0af5a6c+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_astrometryNet/master-gb035c22750+13/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/astrometry_net/0.67.123ff3e.lsst1+3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_astrom/13.0-16-g30f6da5+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_tasks/13.0-66-gfbf2f2ce+2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_modelfit/13.0-11-g2fa83af+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_base/13.0-33-gb1a1d47+2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g6ab8ff23d8/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/1.16.lsst3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst4-1-gf398627/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/13.0-4-gbcd7061+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pyyaml/3.11.lsst1-2-g6ae2b7a/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/13.0-2-g4b114ac+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/apr_util/1.5.4/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/apr/1.5.2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/python_psutil/4.1.0+3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/doxygen/1.8.13.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pep8_naming/0.4.1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pyflakes/1.5.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/flake8/3.3.0.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest/3.2.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/python_future/0.16.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/scons/3.0.0.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/sconsUtils/13.0-13-g8d9cf34+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/afw/13.0-109-g62eb66483/bin:/Users/wmwv/lsstsw/lsst_build/bin:/Users/wmwv/lsstsw/bin:/Users/wmwv/lsstsw/lfs/bin:/Users/wmwv/lsstsw/miniconda/bin:/Volumes/data/Wanalysis/literature/SFD98/bin.macosx:/Users/wmwv/Wanalysis/code/LCfit/python:/Users/wmwv/Wanalysis/code/Cosmology/python:/Users/wmwv/local/bin:/Users/wmwv/local/python:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Library/WebServer/Documents/bin:/Applications/itt/idl/bin:/usr/local/opt/go/libexec/bin:/Users/wmwv/go/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/jointcal/master-gc5b79683b0/bin [2018-01-24T16:56:50.463444Z] +++ PATH=/Volumes/PS1/lsstsw/eups/2.1.3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/treecorr/3.2.3.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_base/master-g24db930f3a+9/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_drp/master-g93314e9430/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/verify/master-ga204a195d9+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_monocam/13.0-4-gd513ce3+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_subaru/13.0-49-gcb35f37b+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_decam/13.0-24-g3127c16/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_ctio0m9/master-g0929698575/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_comCam/master-gd11fa75b98/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_cfht/13.0-14-g5d31639/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/mpich/3.2.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_pool/13.0-6-gf96f8ec+30/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_drivers/13.0-21-g61c0bd4/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/tmv/0.73.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/cat/13.0-3-gcebd4ec+17/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/bin/sst:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_orca/13.0-4-gfa178eb+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_execute/13.0-5-g1b5eec6+9/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/psfex/12.0+23/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_psfex/13.0-5-gd2c5893+35/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/xpa/2.1.15.lsst3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_sdss/13.0-11-g49fd657+5/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_lsstSim/13.0-17-gf21e97d/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pykg_config/1.3.0+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_isr/13.0-15-g0af5a6c+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_astrometryNet/master-gb035c22750+13/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/astrometry_net/0.67.123ff3e.lsst1+3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_astrom/13.0-16-g30f6da5+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_tasks/13.0-66-gfbf2f2ce+2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_modelfit/13.0-11-g2fa83af+11/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_base/13.0-33-gb1a1d47+2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g6ab8ff23d8/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/1.16.lsst3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst4-1-gf398627/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/13.0-4-gbcd7061+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pyyaml/3.11.lsst1-2-g6ae2b7a/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/13.0-2-g4b114ac+7/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/apr_util/1.5.4/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/apr/1.5.2/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/python_psutil/4.1.0+3/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/doxygen/1.8.13.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pep8_naming/0.4.1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pyflakes/1.5.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/flake8/3.3.0.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest/3.2.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/python_future/0.16.0/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/scons/3.0.0.lsst1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/sconsUtils/13.0-13-g8d9cf34+1/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/afw/13.0-109-g62eb66483/bin:/Users/wmwv/lsstsw/lsst_build/bin:/Users/wmwv/lsstsw/bin:/Users/wmwv/lsstsw/lfs/bin:/Users/wmwv/lsstsw/miniconda/bin:/Volumes/data/Wanalysis/literature/SFD98/bin.macosx:/Users/wmwv/Wanalysis/code/LCfit/python:/Users/wmwv/Wanalysis/code/Cosmology/python:/Users/wmwv/local/bin:/Users/wmwv/local/python:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Library/WebServer/Documents/bin:/Applications/itt/idl/bin:/usr/local/opt/go/libexec/bin:/Users/wmwv/go/bin:/Volumes/PS1/lsstsw/stack/DarwinX86/jointcal/master-gc5b79683b0/bin [2018-01-24T16:56:50.470779Z] +++ export PYTHONPATH=/Volumes/PS1/lsstsw/eups/2.1.3/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ci_ctio0m9/master-gbe69b68c0a/python:/Volumes/PS1/lsstsw/stack/DarwinX86/treecorr/3.2.3.lsst2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_base/master-g24db930f3a+9/python:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_drp/master-g93314e9430/python:/Volumes/PS1/lsstsw/stack/DarwinX86/verify_metrics/master-gefb3fcf52b+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/requests/2.9.1.lsst1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/verify/master-ga204a195d9+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/jointcal/master-gc5b79683b0/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_monocam/13.0-4-gd513ce3+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_subaru/13.0-49-gcb35f37b+1/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_decam/13.0-24-g3127c16/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_ctio0m9/master-g0929698575/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_comCam/master-gd11fa75b98/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_cfht/13.0-14-g5d31639/python:/Volumes/PS1/lsstsw/stack/DarwinX86/mpi4py/2.0.0+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_pool/13.0-6-gf96f8ec+30/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_drivers/13.0-21-g61c0bd4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_shapeHSM/13.0-9-g1922b1c+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_photometryKron/13.0-7-g30344f0+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/sqlalchemy/1.0.8.lsst3+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/db/13.0-2-g5a74774+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/cat/13.0-3-gcebd4ec+17/python:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/bin/sst:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_orca/13.0-4-gfa178eb+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_execute/13.0-5-g1b5eec6+9/python:/Volumes/PS1/lsstsw/stack/DarwinX86/psfex/12.0+23/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_psfex/13.0-5-gd2c5893+35/python:/Volumes/PS1/lsstsw/stack/DarwinX86/display_ds9/13.0-2-g6174d4c+51/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_simpleShape/13.0-7-ge993229+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_sdss/13.0-11-g49fd657+5/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_mysqlclient/1.3.7.lsst1+9/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_lsstSim/13.0-17-gf21e97d/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pykg_config/1.3.0+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/healpy/1.10.3.lsst1+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/skymap/13.0-5-g2a40766+12/python:/Volumes/PS1/lsstsw/stack/DarwinX86/coadd_chisquared/13.0-3-g3542790+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/lmfit/0.9.3+5/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_diffim/13.0-28-gf4bc96c+4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_isr/13.0-15-g0af5a6c+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_astrometryNet/master-gb035c22750+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/astrometry_net/0.67.123ff3e.lsst1+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_astrom/13.0-16-g30f6da5+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_tasks/13.0-66-gfbf2f2ce+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/shapelet/13.0-6-ge6e5c2d+10/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_modelfit/13.0-11-g2fa83af+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/stsci_distutils/0.3.7.lsst1+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_d2to1/0.2.12.lsst2+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyfits/3.4.0+8/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/geom/13.0-1-g7257b6a+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/skypix/13.0+87/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_base/13.0-55-gb064ced/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_test/13.0-14-g7685640/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_base/13.0-14-g8b3bf66+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/coadd_utils/13.0-4-g4231ded+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_base/13.0-33-gb1a1d47+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/esutil/0.6.0+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_algorithms/13.0-24-g22030a45+4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/master-g139ee105a0+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.0-4-g0cefb59+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/13.0-4-gbcd7061+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyyaml/3.11.lsst1-2-g6ae2b7a/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/13.0-2-g4b114ac+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/log/13.0-7-g73c05b9+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/13.0-40-g460649b+5/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_psutil/4.1.0+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/13.0-3-g13ef843+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_session2file/0.1.9/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_execnet/1.4.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_forked/0.2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_xdist/1.19.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pep8_naming/0.4.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyflakes/1.5.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pycodestyle/2.3.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_mccabe/0.6.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/flake8/3.3.0.lsst1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_flake8/0.8.1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest/3.2.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_future/0.16.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/sconsUtils/13.0-13-g8d9cf34+1/python:/Volumes/PS1/lsstsw/stack/DarwinX86/base/13.0-12-g6586b4b+3/python:/Volumes/PS1/lsstsw/stack/DarwinX86/utils/13.0-12-gac01bb5+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/13.0-5-g99bcfa4+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/afw/13.0-109-g62eb66483/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_deblender/13.0-13-g8b7e855+11/python:/Users/wmwv/lsstsw/lsst_build/python:/Users/wmwv/local/lib/python/site-packages:/Users/wmwv/local/python:/Users/wmwv/Wanalysis/code/LCfit/python:/Users/wmwv/Wanalysis/code/Cosmology/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_convolved/master-gaffd610453+13/python [2018-01-24T16:56:50.478093Z] +++ PYTHONPATH=/Volumes/PS1/lsstsw/eups/2.1.3/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ci_ctio0m9/master-gbe69b68c0a/python:/Volumes/PS1/lsstsw/stack/DarwinX86/treecorr/3.2.3.lsst2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_base/master-g24db930f3a+9/python:/Volumes/PS1/lsstsw/stack/DarwinX86/validate_drp/master-g93314e9430/python:/Volumes/PS1/lsstsw/stack/DarwinX86/verify_metrics/master-gefb3fcf52b+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/requests/2.9.1.lsst1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/verify/master-ga204a195d9+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/jointcal/master-gc5b79683b0/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_monocam/13.0-4-gd513ce3+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_subaru/13.0-49-gcb35f37b+1/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_decam/13.0-24-g3127c16/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_ctio0m9/master-g0929698575/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_comCam/master-gd11fa75b98/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_cfht/13.0-14-g5d31639/python:/Volumes/PS1/lsstsw/stack/DarwinX86/mpi4py/2.0.0+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_pool/13.0-6-gf96f8ec+30/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_drivers/13.0-21-g61c0bd4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/galsim/1.4.3.lsst1+1:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_shapeHSM/13.0-9-g1922b1c+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_photometryKron/13.0-7-g30344f0+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/sqlalchemy/1.0.8.lsst3+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/db/13.0-2-g5a74774+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/cat/13.0-3-gcebd4ec+17/python:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/bin/sst:/Volumes/PS1/lsstsw/stack/DarwinX86/datarel/13.0-1-g46ffeb4+37/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_orca/13.0-4-gfa178eb+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ctrl_execute/13.0-5-g1b5eec6+9/python:/Volumes/PS1/lsstsw/stack/DarwinX86/psfex/12.0+23/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_psfex/13.0-5-gd2c5893+35/python:/Volumes/PS1/lsstsw/stack/DarwinX86/display_ds9/13.0-2-g6174d4c+51/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_simpleShape/13.0-7-ge993229+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_sdss/13.0-11-g49fd657+5/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_mysqlclient/1.3.7.lsst1+9/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_lsstSim/13.0-17-gf21e97d/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pykg_config/1.3.0+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/healpy/1.10.3.lsst1+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/skymap/13.0-5-g2a40766+12/python:/Volumes/PS1/lsstsw/stack/DarwinX86/coadd_chisquared/13.0-3-g3542790+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/lmfit/0.9.3+5/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_diffim/13.0-28-gf4bc96c+4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ip_isr/13.0-15-g0af5a6c+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_astrometryNet/master-gb035c22750+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/astrometry_net/0.67.123ff3e.lsst1+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_astrom/13.0-16-g30f6da5+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_tasks/13.0-66-gfbf2f2ce+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/shapelet/13.0-6-ge6e5c2d+10/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_modelfit/13.0-11-g2fa83af+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/stsci_distutils/0.3.7.lsst1+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_d2to1/0.2.12.lsst2+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyfits/3.4.0+8/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/geom/13.0-1-g7257b6a+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/skypix/13.0+87/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_base/13.0-55-gb064ced/python:/Volumes/PS1/lsstsw/stack/DarwinX86/obs_test/13.0-14-g7685640/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pipe_base/13.0-14-g8b3bf66+11/python:/Volumes/PS1/lsstsw/stack/DarwinX86/coadd_utils/13.0-4-g4231ded+13/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_base/13.0-33-gb1a1d47+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/esutil/0.6.0+2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_algorithms/13.0-24-g22030a45+4/python:/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/master-g139ee105a0+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.0-4-g0cefb59+2/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/13.0-4-gbcd7061+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyyaml/3.11.lsst1-2-g6ae2b7a/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/13.0-2-g4b114ac+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/log/13.0-7-g73c05b9+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/13.0-40-g460649b+5/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_psutil/4.1.0+3/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/13.0-3-g13ef843+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_session2file/0.1.9/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_execnet/1.4.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_forked/0.2/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_xdist/1.19.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pep8_naming/0.4.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pyflakes/1.5.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pycodestyle/2.3.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_mccabe/0.6.1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/flake8/3.3.0.lsst1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest_flake8/0.8.1+1/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/pytest/3.2.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/python_future/0.16.0/lib/python:/Volumes/PS1/lsstsw/stack/DarwinX86/sconsUtils/13.0-13-g8d9cf34+1/python:/Volumes/PS1/lsstsw/stack/DarwinX86/base/13.0-12-g6586b4b+3/python:/Volumes/PS1/lsstsw/stack/DarwinX86/utils/13.0-12-gac01bb5+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/13.0-5-g99bcfa4+7/python:/Volumes/PS1/lsstsw/stack/DarwinX86/afw/13.0-109-g62eb66483/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_deblender/13.0-13-g8b7e855+11/python:/Users/wmwv/lsstsw/lsst_build/python:/Users/wmwv/local/lib/python/site-packages:/Users/wmwv/local/python:/Users/wmwv/Wanalysis/code/LCfit/python:/Users/wmwv/Wanalysis/code/Cosmology/python:/Volumes/PS1/lsstsw/stack/DarwinX86/meas_extensions_convolved/master-gaffd610453+13/python [2018-01-24T16:56:50.478279Z] +++ export EUPS_PATH=/Users/wmwv/lsstsw/stack:/Volumes/PS1/lsstsw/stack [2018-01-24T16:56:50.478367Z] +++ EUPS_PATH=/Users/wmwv/lsstsw/stack:/Volumes/PS1/lsstsw/stack [2018-01-24T16:56:50.478472Z] ++ export 'SETUP_EUPS=eups LOCAL:/Volumes/PS1/lsstsw/eups/2.1.3 -f (none) -Z (none)' [2018-01-24T16:56:50.478570Z] ++ SETUP_EUPS='eups LOCAL:/Volumes/PS1/lsstsw/eups/2.1.3 -f (none) -Z (none)' [2018-01-24T16:56:50.478660Z] ++ export EUPS_PATH=/Volumes/PS1/lsstsw/stack:/Users/wmwv/lsstsw/stack [2018-01-24T16:56:50.478747Z] ++ EUPS_PATH=/Volumes/PS1/lsstsw/stack:/Users/wmwv/lsstsw/stack [2018-01-24T16:56:50.478797Z] ++ unset eupslocalpath _eups_path [2018-01-24T16:56:50.478900Z] ++ '[' X '!=' X -a -f /Volumes/PS1/lsstsw/eups/2.1.3/etc/bash_completion.d/eups ']' [2018-01-24T16:56:50.478960Z] + export EUPS_PATH=/Users/wmwv/lsstsw/stack [2018-01-24T16:56:50.479013Z] + EUPS_PATH=/Users/wmwv/lsstsw/stack [2018-01-24T16:56:50.479062Z] + cd /Users/wmwv/lsstsw/build/afw [2018-01-24T16:56:50.479095Z] + git reset --hard [2018-01-24T16:56:50.479169Z] HEAD is now at 5205ac629 Merge branch 'tickets/DM-13084' [2018-01-24T16:56:50.479223Z] + git clean -d -f -q -x -e '_build.*' [2018-01-24T16:56:50.479310Z] + eupspkg PRODUCT=afw VERSION=14.0-36-g5205ac629 FLAVOR=generic prep [2018-01-24T16:56:52.864445Z] + cat [2018-01-24T16:56:52.868813Z] + set +x [2018-01-24T16:56:52.868889Z] Setting up environment with EUPS [2018-01-24T16:56:57.411436Z] + eupspkg PRODUCT=afw VERSION=14.0-36-g5205ac629 FLAVOR=generic config [2018-01-24T16:57:00.570033Z] + eupspkg PRODUCT=afw VERSION=14.0-36-g5205ac629 FLAVOR=generic build [2018-01-24T16:57:05.081114Z] [?1034hscons: Reading SConscript files ... [2018-01-24T16:57:06.133143Z] Setting OS X binary compatibility level: 10.9 [2018-01-24T16:57:06.133299Z] EUPS integration: enabled [2018-01-24T16:57:06.382627Z] Checking who built the CC compiler...yes [2018-01-24T16:57:06.382810Z] CC is clang version 9.0.0 [2018-01-24T16:57:06.383627Z] Checking for C++14 support [2018-01-24T16:57:06.446523Z] Checking whether the C++ compiler works... yes [2018-01-24T16:57:06.446784Z] C++14 supported with '-std=c++14' [2018-01-24T16:57:06.642786Z] Setting up environment to build package 'afw'. [2018-01-24T16:57:17.640905Z] Skipping testTableArchivesLib.py [2018-01-24T16:57:17.643165Z] Running pytest with 16 processes [2018-01-24T16:57:17.643464Z] pytest: running on 123 Python test files. [2018-01-24T16:57:17.881089Z] scons: done reading SConscript files. [2018-01-24T16:57:17.884359Z] scons: Building targets ... [2018-01-24T16:57:18.217964Z] c++ -o src/cameraGeom/CameraPoint.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/cameraGeom/CameraPoint.cc [2018-01-24T16:57:18.235979Z] c++ -o src/cameraGeom/CameraSys.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/cameraGeom/CameraSys.cc [2018-01-24T16:57:18.886198Z] c++ -o src/cameraGeom/Detector.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/cameraGeom/Detector.cc [2018-01-24T16:57:18.948835Z] c++ -o src/cameraGeom/Orientation.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/cameraGeom/Orientation.cc [2018-01-24T16:57:18.985960Z] c++ -o src/cameraGeom/TransformMap.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/cameraGeom/TransformMap.cc [2018-01-24T16:57:19.025776Z] c++ -o src/coord/Coord.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/coord/Coord.cc [2018-01-24T16:57:19.064379Z] c++ -o src/coord/Observatory.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/coord/Observatory.cc [2018-01-24T16:57:19.099587Z] c++ -o src/coord/Weather.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/coord/Weather.cc [2018-01-24T16:57:19.221799Z] c++ -o src/detection/Footprint.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/Footprint.cc [2018-01-24T16:57:19.278299Z] cd include/lsst/afw/table && m4 -E < Source.h.m4 > /Volumes/PS1/lsstsw/build/afw/include/lsst/afw/table/Source.h [2018-01-24T16:57:19.368938Z] c++ -o src/detection/GaussianPsf.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/GaussianPsf.cc [2018-01-24T16:57:19.415425Z] c++ -o src/detection/HeavyFootprint.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/HeavyFootprint.cc [2018-01-24T16:57:19.464446Z] c++ -o src/detection/Peak.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/Peak.cc [2018-01-24T16:57:19.514900Z] c++ -o src/detection/Psf.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/Psf.cc [2018-01-24T16:57:19.591714Z] c++ -o src/detection/PsfFormatter.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/PsfFormatter.cc [2018-01-24T16:57:19.633402Z] c++ -o src/detection/Threshold.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/Threshold.cc [2018-01-24T16:57:19.704900Z] c++ -o src/detection/FootprintSet.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/FootprintSet.cc [2018-01-24T16:57:19.747539Z] c++ -o src/detection/FootprintMerge.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/detection/FootprintMerge.cc [2018-01-24T16:57:22.104069Z] c++ -o src/fits.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/fits.cc [2018-01-24T16:57:22.203467Z] c++ -o src/fitsCompression.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/fitsCompression.cc [2018-01-24T16:57:27.794987Z] c++ -o src/formatters/DecoratedImageFormatter.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/formatters/DecoratedImageFormatter.cc [2018-01-24T16:57:31.024262Z] c++ -o src/formatters/ExposureFormatter.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/formatters/ExposureFormatter.cc [2018-01-24T16:57:31.470860Z] c++ -o src/formatters/ImageFormatter.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/formatters/ImageFormatter.cc [2018-01-24T16:57:31.602049Z] src/fits.cc:91:22: warning: unused variable 'CONSTANT' [-Wunused-const-variable] [2018-01-24T16:57:31.602200Z] static int const CONSTANT = TSBYTE; [2018-01-24T16:57:31.602281Z] ^ [2018-01-24T16:57:31.639647Z] c++ -o src/formatters/KernelFormatter.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include 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src/geom/AffineXYTransform.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include 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/Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/InvertedXYTransform.cc [2018-01-24T16:57:44.374209Z] c++ -o src/geom/LinearFunctor.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem 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src/geom/LinearTransform.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include 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/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/ellipses/BaseCore.cc [2018-01-24T16:57:50.990953Z] c++ -o src/geom/ellipses/ConformalShear.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/ellipses/ConformalShear.cc [2018-01-24T16:57:51.436578Z] 1 warning generated. [2018-01-24T16:57:51.613469Z] c++ -o src/geom/ellipses/Convolution.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/ellipses/Convolution.cc [2018-01-24T16:57:51.644782Z] c++ -o src/geom/ellipses/Distortion.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/ellipses/Distortion.cc [2018-01-24T16:57:52.031394Z] c++ -o src/geom/ellipses/Ellipse.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/ellipses/Ellipse.cc [2018-01-24T16:57:52.540130Z] c++ -o src/geom/ellipses/GridTransform.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/ellipses/GridTransform.cc [2018-01-24T16:57:52.762515Z] c++ -o src/geom/ellipses/Parametric.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/ellipses/Parametric.cc [2018-01-24T16:57:52.872024Z] c++ -o src/geom/ellipses/PixelRegion.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/geom/ellipses/PixelRegion.cc [2018-01-24T16:57:53.458817Z] c++ -o src/geom/ellipses/Quadrupole.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include 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src/geom/wcsUtils.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem 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-I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/ApCorrMap.cc [2018-01-24T16:57:59.465777Z] c++ -o src/image/Calib.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/Calib.cc [2018-01-24T16:57:59.520502Z] c++ -o src/image/CoaddInputs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/CoaddInputs.cc [2018-01-24T16:58:01.003338Z] c++ -o src/image/DecoratedImage.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include 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/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/DecoratedImage.cc [2018-01-24T16:58:02.148428Z] c++ -o src/image/DistortedTanWcs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/DistortedTanWcs.cc [2018-01-24T16:58:03.422458Z] c++ -o src/image/Exposure.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/Exposure.cc [2018-01-24T16:58:04.116674Z] c++ -o src/image/ExposureInfo.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/ExposureInfo.cc [2018-01-24T16:58:04.948778Z] c++ -o src/image/Filter.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/Filter.cc [2018-01-24T16:58:05.218132Z] c++ -o src/image/Image.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/Image.cc [2018-01-24T16:58:05.688499Z] c++ -o src/image/ImagePca.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/ImagePca.cc [2018-01-24T16:58:05.829653Z] c++ -o src/image/ImageSlice.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem 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src/image/Mask.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/Mask.cc [2018-01-24T16:58:08.168459Z] c++ -o src/image/MaskedImage.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/MaskedImage.cc [2018-01-24T16:58:10.579174Z] c++ -o src/image/PhotoCalib.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/PhotoCalib.cc [2018-01-24T16:58:10.743537Z] c++ -o src/image/TanWcs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/TanWcs.cc [2018-01-24T16:58:11.384648Z] c++ -o src/image/TransmissionCurve.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include 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/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/TransmissionCurve.cc [2018-01-24T16:58:11.582502Z] c++ -o src/image/VisitInfo.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/VisitInfo.cc [2018-01-24T16:58:11.743033Z] c++ -o src/image/Wcs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/Wcs.cc [2018-01-24T16:58:12.102974Z] c++ -o src/image/makeWcs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/image/makeWcs.cc [2018-01-24T16:58:12.976331Z] c++ -o src/math/AnalyticKernel.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/AnalyticKernel.cc [2018-01-24T16:58:13.276759Z] c++ -o src/math/Approximate.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/Approximate.cc [2018-01-24T16:58:18.029072Z] c++ -o src/math/Background.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/Background.cc [2018-01-24T16:58:18.556158Z] src/image/TransmissionCurve.cc:93:46: warning: '_multipliedByImpl' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] [2018-01-24T16:58:18.556372Z] std::shared_ptr _multipliedByImpl( [2018-01-24T16:58:18.556484Z] ^ [2018-01-24T16:58:18.557101Z] include/lsst/afw/image/TransmissionCurve.h:237:54: note: overridden virtual function is here [2018-01-24T16:58:18.557252Z] virtual std::shared_ptr _multipliedByImpl( [2018-01-24T16:58:18.557370Z] ^ [2018-01-24T16:58:18.768262Z] c++ -o src/math/BackgroundMI.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/BackgroundMI.cc [2018-01-24T16:58:18.848699Z] src/image/TransmissionCurve.cc:587:10: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] [2018-01-24T16:58:18.848970Z] void write(OutputArchiveHandle & handle) const { [2018-01-24T16:58:18.849021Z] ^ [2018-01-24T16:58:18.849204Z] include/lsst/afw/table/io/Persistable.h:134:18: note: overridden virtual function is here [2018-01-24T16:58:18.849330Z] virtual void write(OutputArchiveHandle& handle) const; [2018-01-24T16:58:18.849391Z] ^ [2018-01-24T16:58:18.862582Z] src/image/TransmissionCurve.cc:676:10: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] [2018-01-24T16:58:18.862806Z] void write(OutputArchiveHandle & handle) const { [2018-01-24T16:58:18.862881Z] ^ [2018-01-24T16:58:18.863537Z] include/lsst/afw/table/io/Persistable.h:134:18: note: overridden virtual function is here [2018-01-24T16:58:18.863741Z] virtual void write(OutputArchiveHandle& handle) const; [2018-01-24T16:58:18.863827Z] ^ [2018-01-24T16:58:20.592058Z] c++ -o src/math/BoundedField.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/BoundedField.cc [2018-01-24T16:58:22.893923Z] c++ -o src/math/ChebyshevBoundedField.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/ChebyshevBoundedField.cc [2018-01-24T16:58:23.652579Z] c++ -o src/math/ConvolveImage.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/ConvolveImage.cc [2018-01-24T16:58:23.735441Z] c++ -o src/math/DeltaFunctionKernel.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/DeltaFunctionKernel.cc [2018-01-24T16:58:23.909685Z] c++ -o src/math/FixedKernel.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/FixedKernel.cc [2018-01-24T16:58:25.297900Z] c++ -o src/math/Function.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/Function.cc [2018-01-24T16:58:25.379684Z] c++ -o src/math/FunctionLibrary.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/FunctionLibrary.cc [2018-01-24T16:58:27.385864Z] 3 warnings generated. [2018-01-24T16:58:27.492629Z] c++ -o src/math/GaussianProcess.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/GaussianProcess.cc [2018-01-24T16:58:27.591980Z] c++ -o src/math/Interpolate.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/Interpolate.cc [2018-01-24T16:58:27.735724Z] c++ -o src/math/Kernel.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/Kernel.cc [2018-01-24T16:58:28.164380Z] c++ -o src/math/KernelFunctions.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/KernelFunctions.cc [2018-01-24T16:58:28.273527Z] c++ -o src/math/KernelPersistenceHelper.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/KernelPersistenceHelper.cc [2018-01-24T16:58:28.559432Z] c++ -o src/math/LeastSquares.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/LeastSquares.cc [2018-01-24T16:58:30.631537Z] c++ -o src/math/LinearCombinationKernel.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/LinearCombinationKernel.cc [2018-01-24T16:58:33.941983Z] c++ -o src/math/Random.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem 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/Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/math/warpExposure.cc [2018-01-24T16:58:47.246904Z] c++ -o src/table/AliasMap.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include 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/Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/AliasMap.cc [2018-01-24T16:58:49.076888Z] c++ -o src/table/AmpInfo.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem 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src/table/BaseColumnView.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include 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-I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/IdFactory.cc [2018-01-24T16:58:53.859420Z] c++ -o src/table/KeyBase.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/KeyBase.cc [2018-01-24T16:58:54.904907Z] c++ -o src/table/Match.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/Match.cc [2018-01-24T16:58:56.456879Z] c++ -o src/table/Schema.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/Schema.cc [2018-01-24T16:58:57.782243Z] c++ -o src/table/SchemaMapper.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/SchemaMapper.cc [2018-01-24T16:58:58.051877Z] c++ -o src/table/Simple.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/Simple.cc [2018-01-24T16:58:59.485106Z] c++ -o src/table/Source.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/Source.cc [2018-01-24T16:58:59.569428Z] src/table/FieldBase.cc:111:23: warning: explicit instantiation of 'FieldBase' that occurs after an explicit specialization has no effect [-Winstantiation-after-specialization] [2018-01-24T16:58:59.569596Z] BOOST_PP_SEQ_FOR_EACH(INSTANTIATE_FIELD_BASE, _, [2018-01-24T16:58:59.569773Z] ^ [2018-01-24T16:58:59.570043Z] include/lsst/afw/table/Flag.h:31:8: note: previous template specialization is here [2018-01-24T16:58:59.570126Z] struct FieldBase { [2018-01-24T16:58:59.570169Z] ^ [2018-01-24T16:58:59.573291Z] src/table/FieldBase.cc:111:23: warning: explicit instantiation of 'FieldBase >' that occurs after an explicit specialization has no effect [-Winstantiation-after-specialization] [2018-01-24T16:58:59.573442Z] BOOST_PP_SEQ_FOR_EACH(INSTANTIATE_FIELD_BASE, _, [2018-01-24T16:58:59.573516Z] ^ [2018-01-24T16:58:59.573695Z] include/lsst/afw/table/FieldBase.h:214:8: note: previous template specialization is here [2018-01-24T16:58:59.573781Z] struct FieldBase { [2018-01-24T16:58:59.573852Z] ^ [2018-01-24T16:58:59.711430Z] c++ -o src/table/aggregates.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/aggregates.cc [2018-01-24T16:59:01.025570Z] src/table/KeyBase.cc:75:23: warning: explicit instantiation of 'KeyBase' that occurs after an explicit specialization has no effect [-Winstantiation-after-specialization] [2018-01-24T16:59:01.025750Z] BOOST_PP_SEQ_FOR_EACH(INSTANTIATE_KEY, _, [2018-01-24T16:59:01.025816Z] ^ [2018-01-24T16:59:01.025968Z] include/lsst/afw/table/Flag.h:59:7: note: previous template specialization is here [2018-01-24T16:59:01.026030Z] class KeyBase { [2018-01-24T16:59:01.026067Z] ^ [2018-01-24T16:59:02.563617Z] c++ -o src/table/arrays.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/arrays.cc [2018-01-24T16:59:03.054326Z] c++ -o src/table/io/ArchiveIndexSchema.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/io/ArchiveIndexSchema.cc [2018-01-24T16:59:04.590343Z] 2 warnings generated. [2018-01-24T16:59:04.672243Z] c++ -o src/table/io/FitsReader.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/io/FitsReader.cc [2018-01-24T16:59:05.176758Z] c++ -o src/table/io/FitsSchemaInputMapper.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/io/FitsSchemaInputMapper.cc [2018-01-24T16:59:06.737356Z] c++ -o src/table/io/FitsWriter.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/io/FitsWriter.cc [2018-01-24T16:59:06.896318Z] 1 warning generated. [2018-01-24T16:59:06.995701Z] c++ -o src/table/io/InputArchive.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/io/InputArchive.cc [2018-01-24T16:59:09.195690Z] c++ -o src/table/io/OutputArchive.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/io/OutputArchive.cc [2018-01-24T16:59:10.019210Z] c++ -o src/table/io/Persistable.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/io/Persistable.cc [2018-01-24T16:59:11.663890Z] c++ -o src/table/slots.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include src/table/slots.cc [2018-01-24T16:59:12.927018Z] c++ -o python/lsst/afw/cameraGeom/cameraPoint.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/cameraGeom/cameraPoint.cc [2018-01-24T16:59:14.480990Z] c++ -o python/lsst/afw/cameraGeom/cameraSys.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/cameraGeom/cameraSys.cc [2018-01-24T16:59:15.019692Z] c++ -o python/lsst/afw/cameraGeom/detector.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/cameraGeom/detector.cc [2018-01-24T16:59:16.597322Z] c++ -o python/lsst/afw/cameraGeom/orientation.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/cameraGeom/orientation.cc [2018-01-24T16:59:16.933711Z] In file included from python/lsst/afw/cameraGeom/detector.cc:29: [2018-01-24T16:59:16.933985Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:16.934230Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:16.934476Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:16.934903Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:16.935030Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:16.935066Z] ^ [2018-01-24T16:59:18.110941Z] In file included from python/lsst/afw/cameraGeom/detector.cc:30: [2018-01-24T16:59:18.111236Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:18.111657Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:18.111911Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:18.111968Z] ^ [2018-01-24T16:59:18.139742Z] c++ -o python/lsst/afw/cameraGeom/transformMap.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/cameraGeom/transformMap.cc [2018-01-24T16:59:18.425186Z] c++ -o python/lsst/afw/coord/observatory.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/coord/observatory.cc [2018-01-24T16:59:18.725945Z] c++ -o python/lsst/afw/coord/weather.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/coord/weather.cc [2018-01-24T16:59:18.887562Z] c++ -o python/lsst/afw/coord/coord.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/coord/coord.cc [2018-01-24T16:59:20.547690Z] c++ -o python/lsst/afw/detection/psf.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/psf.cc [2018-01-24T16:59:21.294074Z] c++ -o python/lsst/afw/detection/footprint.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/footprint.cc [2018-01-24T16:59:21.878855Z] c++ -o python/lsst/afw/detection/footprintSet.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/footprintSet.cc [2018-01-24T16:59:22.224066Z] c++ -o python/lsst/afw/detection/threshold.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/threshold.cc [2018-01-24T16:59:22.804395Z] c++ -o python/lsst/afw/detection/peak.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/peak.cc [2018-01-24T16:59:22.940519Z] c++ -o python/lsst/afw/detection/footprintCtrl.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/footprintCtrl.cc [2018-01-24T16:59:23.143847Z] In file included from python/lsst/afw/detection/footprint.cc:29: [2018-01-24T16:59:23.144166Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:23.144399Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:23.144627Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:23.145062Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:23.145189Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:23.145222Z] ^ [2018-01-24T16:59:23.618109Z] c++ -o python/lsst/afw/detection/gaussianPsf.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/gaussianPsf.cc [2018-01-24T16:59:24.363790Z] In file included from python/lsst/afw/detection/footprint.cc:30: [2018-01-24T16:59:24.364256Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:24.364695Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:24.364950Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:24.365002Z] ^ [2018-01-24T16:59:24.665587Z] c++ -o python/lsst/afw/detection/footprintMerge.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/footprintMerge.cc [2018-01-24T16:59:25.343752Z] c++ -o python/lsst/afw/detection/heavyFootprint.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/detection/heavyFootprint.cc [2018-01-24T16:59:26.260507Z] c++ -o python/lsst/afw/display/saturated.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/display/saturated.cc [2018-01-24T16:59:27.285937Z] In file included from python/lsst/afw/detection/heavyFootprint.cc:26: [2018-01-24T16:59:27.286559Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:27.286794Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:27.287036Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:27.287466Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:27.287593Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:27.287628Z] ^ [2018-01-24T16:59:27.736043Z] c++ -o python/lsst/afw/display/scaling.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/display/scaling.cc [2018-01-24T16:59:28.521731Z] In file included from python/lsst/afw/detection/heavyFootprint.cc:27: [2018-01-24T16:59:28.522002Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:28.522410Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:28.522653Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:28.522701Z] ^ [2018-01-24T16:59:32.237082Z] c++ -o python/lsst/afw/display/rgb.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/display/rgb.cc [2018-01-24T16:59:32.512258Z] c++ -o python/lsst/afw/display/simpleFits.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/display/simpleFits.cc [2018-01-24T16:59:32.550619Z] c++ -o python/lsst/afw/display/_simpleFits.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/display/_simpleFits.cc [2018-01-24T16:59:33.353080Z] c++ -o python/lsst/afw/fits/fits.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/fits/fits.cc [2018-01-24T16:59:35.078888Z] c++ -o python/lsst/afw/formatters/utils.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/formatters/utils.cc [2018-01-24T16:59:35.511696Z] In file included from python/lsst/afw/fits/fits.cc:26: [2018-01-24T16:59:35.512025Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:35.512316Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:35.512598Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:35.513078Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:35.513353Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:35.513412Z] ^ [2018-01-24T16:59:36.765033Z] In file included from python/lsst/afw/fits/fits.cc:27: [2018-01-24T16:59:36.765360Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:36.765811Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:36.766118Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:36.766174Z] ^ [2018-01-24T16:59:36.993070Z] In file included from python/lsst/afw/formatters/utils.cc:26: [2018-01-24T16:59:36.993347Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:36.993581Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:36.993816Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:36.994246Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:36.994371Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:36.994406Z] ^ [2018-01-24T16:59:38.124241Z] 2 warnings generated. [2018-01-24T16:59:38.236615Z] In file included from python/lsst/afw/formatters/utils.cc:27: [2018-01-24T16:59:38.236911Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:38.237341Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:38.237559Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:38.237601Z] ^ [2018-01-24T16:59:38.286512Z] c++ -o python/lsst/afw/geom/detail/frameSetUtils.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/detail/frameSetUtils.cc [2018-01-24T16:59:40.221795Z] c++ -o python/lsst/afw/geom/wcsUtils/wcsUtils.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/wcsUtils/wcsUtils.cc [2018-01-24T16:59:41.052121Z] c++ -o python/lsst/afw/geom/affineTransform.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/affineTransform.cc [2018-01-24T16:59:41.129997Z] c++ -o python/lsst/afw/geom/angle/angle.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/angle/angle.cc [2018-01-24T16:59:41.918571Z] In file included from python/lsst/afw/geom/detail/frameSetUtils.cc:27: [2018-01-24T16:59:41.919308Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:41.919546Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:41.919776Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:41.920190Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:41.920664Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:41.920701Z] ^ [2018-01-24T16:59:41.927295Z] In file included from python/lsst/afw/geom/detail/frameSetUtils.cc:28: [2018-01-24T16:59:41.927547Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:41.927954Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:41.928199Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:41.928245Z] ^ [2018-01-24T16:59:42.716232Z] c++ -o python/lsst/afw/geom/box.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/box.cc [2018-01-24T16:59:43.185634Z] In file included from python/lsst/afw/geom/affineTransform.cc:26: [2018-01-24T16:59:43.185970Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:43.186264Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:43.186509Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:43.186988Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:43.187200Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:43.187258Z] ^ [2018-01-24T16:59:43.386365Z] 2 warnings generated. [2018-01-24T16:59:43.487167Z] c++ -o python/lsst/afw/geom/coordinates/coordinates.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/coordinates/coordinates.cc [2018-01-24T16:59:43.668140Z] In file included from python/lsst/afw/geom/wcsUtils/wcsUtils.cc:27: [2018-01-24T16:59:43.668465Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:43.668757Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:43.669054Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:43.669540Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:43.669664Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:43.669695Z] ^ [2018-01-24T16:59:43.676395Z] In file included from python/lsst/afw/geom/wcsUtils/wcsUtils.cc:28: [2018-01-24T16:59:43.676660Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:43.677076Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:43.677332Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:43.677382Z] ^ [2018-01-24T16:59:43.883825Z] c++ -o python/lsst/afw/geom/functor.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/functor.cc [2018-01-24T16:59:44.238424Z] 2 warnings generated. [2018-01-24T16:59:44.376208Z] c++ -o python/lsst/afw/geom/spherePoint/spherePoint.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/spherePoint/spherePoint.cc [2018-01-24T16:59:44.453553Z] In file included from python/lsst/afw/geom/affineTransform.cc:27: [2018-01-24T16:59:44.453814Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:44.454237Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:44.454484Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:44.454526Z] ^ [2018-01-24T16:59:44.557945Z] c++ -o python/lsst/afw/geom/separableXYTransform.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/separableXYTransform.cc [2018-01-24T16:59:44.991929Z] In file included from python/lsst/afw/geom/coordinates/coordinates.cc:24: [2018-01-24T16:59:44.992216Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:44.992487Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:44.993863Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:44.994316Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:44.994444Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:44.994480Z] ^ [2018-01-24T16:59:45.146736Z] c++ -o python/lsst/afw/geom/span.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/span.cc [2018-01-24T16:59:45.246599Z] c++ -o python/lsst/afw/geom/spanSet.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/spanSet.cc [2018-01-24T16:59:46.600143Z] In file included from python/lsst/afw/geom/coordinates/coordinates.cc:25: [2018-01-24T16:59:46.600480Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:46.601017Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:46.601357Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:46.601433Z] ^ [2018-01-24T16:59:47.189898Z] In file included from python/lsst/afw/geom/spanSet.cc:32: [2018-01-24T16:59:47.191876Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:47.192163Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:47.192434Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:47.192893Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:47.193040Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:47.193097Z] ^ [2018-01-24T16:59:48.343866Z] c++ -o python/lsst/afw/geom/linearTransform.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/linearTransform.cc [2018-01-24T16:59:48.407668Z] 2 warnings generated. [2018-01-24T16:59:48.484167Z] In file included from python/lsst/afw/geom/spanSet.cc:33: [2018-01-24T16:59:48.484415Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:48.484832Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:48.485086Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:48.485136Z] ^ [2018-01-24T16:59:48.546022Z] c++ -o python/lsst/afw/geom/xyTransform.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/xyTransform.cc [2018-01-24T16:59:49.824313Z] 2 warnings generated. [2018-01-24T16:59:49.948803Z] c++ -o python/lsst/afw/geom/endpoint.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/endpoint.cc [2018-01-24T16:59:50.398176Z] In file included from python/lsst/afw/geom/linearTransform.cc:26: [2018-01-24T16:59:50.398477Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:50.398762Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:50.398994Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:50.399416Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:50.399541Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:50.399576Z] ^ [2018-01-24T16:59:51.676707Z] In file included from python/lsst/afw/geom/linearTransform.cc:27: [2018-01-24T16:59:51.676964Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:51.677581Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:51.677835Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:51.677884Z] ^ [2018-01-24T16:59:52.115873Z] In file included from python/lsst/afw/geom/endpoint.cc:30: [2018-01-24T16:59:52.116151Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:52.116544Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:52.116850Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:52.117410Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:52.117585Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:52.117622Z] ^ [2018-01-24T16:59:52.470684Z] c++ -o python/lsst/afw/geom/transform/transform.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/transform/transform.cc [2018-01-24T16:59:53.469362Z] In file included from python/lsst/afw/geom/endpoint.cc:31: [2018-01-24T16:59:53.469618Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:53.470030Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:53.470303Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:53.470360Z] ^ [2018-01-24T16:59:54.705883Z] 2 warnings generated. [2018-01-24T16:59:54.840129Z] c++ -o python/lsst/afw/geom/transformFactory.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/transformFactory.cc [2018-01-24T16:59:55.282902Z] c++ -o python/lsst/afw/geom/skyWcs/skyWcs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/skyWcs/skyWcs.cc [2018-01-24T16:59:55.392813Z] c++ -o python/lsst/afw/geom/ellipses/quadrupole.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/quadrupole.cc [2018-01-24T16:59:56.166041Z] In file included from python/lsst/afw/geom/transform/transform.cc:28: [2018-01-24T16:59:56.166315Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:56.166550Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:56.166781Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:56.167223Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:56.167350Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:56.167381Z] ^ [2018-01-24T16:59:56.173199Z] In file included from python/lsst/afw/geom/transform/transform.cc:29: [2018-01-24T16:59:56.173490Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:56.173975Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:56.174238Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:56.174286Z] ^ [2018-01-24T16:59:56.427584Z] c++ -o python/lsst/afw/geom/ellipses/ellipse.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/ellipse.cc [2018-01-24T16:59:56.898976Z] In file included from python/lsst/afw/geom/transformFactory.cc:25: [2018-01-24T16:59:56.899260Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:56.899501Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:56.899736Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:56.900171Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:56.900318Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:56.900362Z] ^ [2018-01-24T16:59:57.264366Z] c++ -o python/lsst/afw/geom/ellipses/pixelRegion.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/pixelRegion.cc [2018-01-24T16:59:57.615005Z] c++ -o python/lsst/afw/geom/ellipses/baseCore.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/baseCore.cc [2018-01-24T16:59:57.987533Z] 2 warnings generated. [2018-01-24T16:59:58.079782Z] In file included from python/lsst/afw/geom/transformFactory.cc:26: [2018-01-24T16:59:58.084978Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:58.085444Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:58.085701Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:58.085772Z] ^ [2018-01-24T16:59:58.098374Z] c++ -o python/lsst/afw/geom/ellipses/axes.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/axes.cc [2018-01-24T16:59:58.485963Z] In file included from python/lsst/afw/geom/ellipses/ellipse.cc:27: [2018-01-24T16:59:58.486800Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:58.487055Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:58.487299Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:58.487745Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:58.487873Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:58.487904Z] ^ [2018-01-24T16:59:59.452528Z] In file included from python/lsst/afw/geom/skyWcs/skyWcs.cc:30: [2018-01-24T16:59:59.452806Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:59.453048Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:59.453291Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:59.453735Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:59.453866Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:59.453902Z] ^ [2018-01-24T16:59:59.459643Z] In file included from python/lsst/afw/geom/skyWcs/skyWcs.cc:31: [2018-01-24T16:59:59.460283Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:59.460926Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:59.461181Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:59.461232Z] ^ [2018-01-24T16:59:59.505978Z] In file included from python/lsst/afw/geom/ellipses/baseCore.cc:26: [2018-01-24T16:59:59.506218Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T16:59:59.506417Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T16:59:59.506615Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T16:59:59.506995Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T16:59:59.507137Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T16:59:59.507171Z] ^ [2018-01-24T16:59:59.730480Z] In file included from python/lsst/afw/geom/ellipses/ellipse.cc:28: [2018-01-24T16:59:59.730736Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T16:59:59.731260Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T16:59:59.731542Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T16:59:59.731597Z] ^ [2018-01-24T17:00:00.724986Z] In file included from python/lsst/afw/geom/ellipses/baseCore.cc:27: [2018-01-24T17:00:00.725285Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:00.725714Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:00.725962Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:00.726011Z] ^ [2018-01-24T17:00:02.490043Z] 2 warnings generated. [2018-01-24T17:00:02.639190Z] c++ -o python/lsst/afw/geom/ellipses/radii.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/radii.cc [2018-01-24T17:00:03.287198Z] c++ -o python/lsst/afw/geom/ellipses/ellipticityBase.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/ellipticityBase.cc [2018-01-24T17:00:03.294004Z] 2 warnings generated. [2018-01-24T17:00:03.394401Z] c++ -o python/lsst/afw/geom/ellipses/distortion.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/distortion.cc [2018-01-24T17:00:05.339815Z] c++ -o python/lsst/afw/geom/ellipses/conformalShear.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/conformalShear.cc [2018-01-24T17:00:07.187657Z] 2 warnings generated. [2018-01-24T17:00:07.280714Z] c++ -o python/lsst/afw/geom/ellipses/reducedShear.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/reducedShear.cc [2018-01-24T17:00:08.918147Z] c++ -o python/lsst/afw/geom/ellipses/separable.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/ellipses/separable.cc [2018-01-24T17:00:09.064893Z] c++ -o python/lsst/afw/geom/polygon/polygon.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/geom/polygon/polygon.cc [2018-01-24T17:00:10.229041Z] 2 warnings generated. [2018-01-24T17:00:10.348184Z] c++ -o python/lsst/afw/image/image/image.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/image/image.cc [2018-01-24T17:00:10.927247Z] 2 warnings generated. [2018-01-24T17:00:11.050130Z] c++ -o python/lsst/afw/image/apCorrMap/apCorrMap.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/apCorrMap/apCorrMap.cc [2018-01-24T17:00:11.434722Z] c++ -o python/lsst/afw/image/calib.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/calib.cc [2018-01-24T17:00:11.731377Z] 2 warnings generated. [2018-01-24T17:00:11.838447Z] c++ -o python/lsst/afw/image/color.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/color.cc [2018-01-24T17:00:11.848259Z] In file included from python/lsst/afw/image/image/image.cc:25: [2018-01-24T17:00:11.848582Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:11.848820Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:11.849056Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:11.849477Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:11.849605Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:11.849638Z] ^ [2018-01-24T17:00:11.986653Z] c++ -o python/lsst/afw/image/coaddInputs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/coaddInputs.cc [2018-01-24T17:00:13.171968Z] c++ -o python/lsst/afw/image/filter.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/filter.cc [2018-01-24T17:00:13.375168Z] In file included from python/lsst/afw/image/image/image.cc:26: [2018-01-24T17:00:13.375584Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:13.376133Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:13.376482Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:13.376555Z] ^ [2018-01-24T17:00:13.382062Z] In file included from python/lsst/afw/image/calib.cc:29: [2018-01-24T17:00:13.382320Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:13.382626Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:13.382933Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:13.383513Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:13.383724Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:13.383785Z] ^ [2018-01-24T17:00:13.855282Z] c++ -o python/lsst/afw/image/photoCalib.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/photoCalib.cc [2018-01-24T17:00:14.450248Z] c++ -o python/lsst/afw/image/wcs/wcs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/wcs/wcs.cc [2018-01-24T17:00:14.666633Z] In file included from python/lsst/afw/image/calib.cc:30: [2018-01-24T17:00:14.666882Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:14.667293Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:14.670584Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:14.671668Z] ^ [2018-01-24T17:00:15.888961Z] c++ -o python/lsst/afw/image/tanWcs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/tanWcs.cc [2018-01-24T17:00:15.903113Z] In file included from python/lsst/afw/image/photoCalib.cc:28: [2018-01-24T17:00:15.903427Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:15.903667Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:15.903956Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:15.904408Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:15.904527Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:15.904557Z] ^ [2018-01-24T17:00:15.991580Z] In file included from python/lsst/afw/image/wcs/wcs.cc:27: [2018-01-24T17:00:15.991994Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:15.992233Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:15.992462Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:15.992885Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:15.993011Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:15.993045Z] ^ [2018-01-24T17:00:16.685069Z] 2 warnings generated. [2018-01-24T17:00:16.859876Z] c++ -o python/lsst/afw/image/distortedTanWcs.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/distortedTanWcs.cc [2018-01-24T17:00:17.171175Z] In file included from python/lsst/afw/image/photoCalib.cc:29: [2018-01-24T17:00:17.171468Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:17.172129Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:17.172469Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:17.172545Z] ^ [2018-01-24T17:00:17.360996Z] In file included from python/lsst/afw/image/tanWcs.cc:25: [2018-01-24T17:00:17.361282Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:17.361512Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:17.361741Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:17.362177Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:17.362307Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:17.362342Z] ^ [2018-01-24T17:00:17.514729Z] In file included from python/lsst/afw/image/wcs/wcs.cc:28: [2018-01-24T17:00:17.516931Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:17.517418Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:17.517670Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:17.517719Z] ^ [2018-01-24T17:00:18.890728Z] In file included from python/lsst/afw/image/tanWcs.cc:26: [2018-01-24T17:00:18.891045Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:18.891503Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:18.891762Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:18.891811Z] ^ [2018-01-24T17:00:20.354703Z] c++ -o python/lsst/afw/image/exposure/exposure.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/exposure/exposure.cc [2018-01-24T17:00:24.792192Z] c++ -o python/lsst/afw/image/exposureInfo.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/exposureInfo.cc [2018-01-24T17:00:25.684583Z] c++ -o python/lsst/afw/image/mask/mask.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/mask/mask.cc [2018-01-24T17:00:27.674532Z] In file included from python/lsst/afw/image/mask/mask.cc:26: [2018-01-24T17:00:27.674845Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:27.675137Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:27.675385Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:27.675829Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:27.675959Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:27.675994Z] ^ [2018-01-24T17:00:27.857977Z] 2 warnings generated. [2018-01-24T17:00:27.996345Z] c++ -o python/lsst/afw/image/maskedImage/maskedImage.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/maskedImage/maskedImage.cc [2018-01-24T17:00:28.972999Z] In file included from python/lsst/afw/image/mask/mask.cc:27: [2018-01-24T17:00:28.973298Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:28.973729Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:28.973995Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:28.974045Z] ^ [2018-01-24T17:00:29.223057Z] c++ -o python/lsst/afw/image/imageUtils.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/imageUtils.cc [2018-01-24T17:00:30.046399Z] c++ -o python/lsst/afw/image/imageSlice.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/imageSlice.cc [2018-01-24T17:00:33.198633Z] c++ -o python/lsst/afw/image/readMetadata.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/readMetadata.cc [2018-01-24T17:00:33.216670Z] 2 warnings generated. [2018-01-24T17:00:33.346279Z] c++ -o python/lsst/afw/image/imagePca.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/imagePca.cc [2018-01-24T17:00:33.460653Z] 2 warnings generated. [2018-01-24T17:00:33.654494Z] c++ -o python/lsst/afw/image/transmissionCurve.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/transmissionCurve.cc [2018-01-24T17:00:33.711407Z] 2 warnings generated. [2018-01-24T17:00:33.944882Z] c++ -o python/lsst/afw/image/visitInfo.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/visitInfo.cc [2018-01-24T17:00:34.051824Z] 2 warnings generated. [2018-01-24T17:00:34.218103Z] c++ -o python/lsst/afw/image/defect.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/defect.cc [2018-01-24T17:00:34.954058Z] c++ -o python/lsst/afw/image/pixel/pixel.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/image/pixel/pixel.cc [2018-01-24T17:00:35.302205Z] 2 warnings generated. [2018-01-24T17:00:35.448555Z] c++ -o python/lsst/afw/math/function.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/function.cc [2018-01-24T17:00:35.665948Z] In file included from python/lsst/afw/image/transmissionCurve.cc:28: [2018-01-24T17:00:35.666236Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:35.666461Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:35.666695Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:35.667127Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:35.667256Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:35.667292Z] ^ [2018-01-24T17:00:36.916662Z] In file included from python/lsst/afw/image/transmissionCurve.cc:29: [2018-01-24T17:00:36.917171Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:36.917640Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:36.917882Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:36.917951Z] ^ [2018-01-24T17:00:44.601112Z] c++ -o python/lsst/afw/math/functionLibrary.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/functionLibrary.cc [2018-01-24T17:00:44.815358Z] 2 warnings generated. [2018-01-24T17:00:44.826864Z] c++ -o python/lsst/afw/math/minimize.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/minimize.cc [2018-01-24T17:00:45.011581Z] c++ -o python/lsst/afw/math/interpolate.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/interpolate.cc [2018-01-24T17:00:46.563902Z] 2 warnings generated. [2018-01-24T17:00:46.692248Z] c++ -o python/lsst/afw/math/gaussianProcess.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/gaussianProcess.cc [2018-01-24T17:00:46.943373Z] In file included from python/lsst/afw/math/interpolate.cc:27: [2018-01-24T17:00:46.943662Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:46.943911Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:46.944144Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:46.944591Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:46.944720Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:46.944753Z] ^ [2018-01-24T17:00:47.075110Z] c++ -o python/lsst/afw/math/spatialCell.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/spatialCell.cc [2018-01-24T17:00:48.279652Z] In file included from python/lsst/afw/math/interpolate.cc:28: [2018-01-24T17:00:48.280369Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:48.284078Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:48.284343Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:48.284391Z] ^ [2018-01-24T17:00:48.559292Z] c++ -o python/lsst/afw/math/boundedField.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/boundedField.cc [2018-01-24T17:00:48.711638Z] c++ -o python/lsst/afw/math/chebyshevBoundedField.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/chebyshevBoundedField.cc [2018-01-24T17:00:48.753364Z] In file included from python/lsst/afw/math/gaussianProcess.cc:27: [2018-01-24T17:00:48.753666Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:48.753984Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:48.754293Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:48.754742Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:48.754869Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:48.754902Z] ^ [2018-01-24T17:00:49.998055Z] c++ -o python/lsst/afw/math/transformBoundedField.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/transformBoundedField.cc [2018-01-24T17:00:49.998238Z] In file included from python/lsst/afw/math/gaussianProcess.cc:28: [2018-01-24T17:00:49.998445Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:49.998980Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:49.999232Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:49.999281Z] ^ [2018-01-24T17:00:50.467884Z] In file included from python/lsst/afw/math/boundedField.cc:28: [2018-01-24T17:00:50.468238Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:50.468555Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:50.468803Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:50.469258Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:50.469384Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:50.469419Z] ^ [2018-01-24T17:00:50.624680Z] 2 warnings generated. [2018-01-24T17:00:50.652475Z] In file included from python/lsst/afw/math/chebyshevBoundedField.cc:27: [2018-01-24T17:00:50.652799Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:50.653040Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:50.653279Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:50.653712Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:50.653838Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:50.653873Z] ^ [2018-01-24T17:00:50.740079Z] c++ -o python/lsst/afw/math/leastSquares.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/leastSquares.cc [2018-01-24T17:00:51.720506Z] In file included from python/lsst/afw/math/boundedField.cc:29: [2018-01-24T17:00:51.720801Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:51.721265Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:51.721527Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:51.721579Z] ^ [2018-01-24T17:00:51.800527Z] c++ -o python/lsst/afw/math/random.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/random.cc [2018-01-24T17:00:51.946055Z] In file included from python/lsst/afw/math/chebyshevBoundedField.cc:28: [2018-01-24T17:00:51.947196Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:51.947614Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:51.947872Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:51.947921Z] ^ [2018-01-24T17:00:51.965683Z] In file included from python/lsst/afw/math/transformBoundedField.cc:26: [2018-01-24T17:00:51.967464Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:51.967775Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:51.968026Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:51.968466Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:51.968678Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:51.968737Z] ^ [2018-01-24T17:00:52.202460Z] In file included from python/lsst/afw/math/leastSquares.cc:27: [2018-01-24T17:00:52.203807Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:00:52.204106Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:00:52.204402Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:00:52.205051Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:00:52.205267Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:00:52.205325Z] ^ [2018-01-24T17:00:53.363239Z] In file included from python/lsst/afw/math/transformBoundedField.cc:27: [2018-01-24T17:00:53.363536Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:53.363961Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:53.364207Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:53.364254Z] ^ [2018-01-24T17:00:53.965292Z] In file included from python/lsst/afw/math/leastSquares.cc:28: [2018-01-24T17:00:53.965549Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:00:53.965979Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:00:53.966237Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:00:53.966288Z] ^ [2018-01-24T17:00:55.091709Z] c++ -o python/lsst/afw/math/convolveImage.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/convolveImage.cc [2018-01-24T17:00:57.852558Z] 2 warnings generated. [2018-01-24T17:00:57.960948Z] c++ -o python/lsst/afw/math/offsetImage.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/offsetImage.cc [2018-01-24T17:00:58.836719Z] c++ -o python/lsst/afw/math/statistics.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/statistics.cc [2018-01-24T17:01:00.398909Z] c++ -o python/lsst/afw/math/stack.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/stack.cc [2018-01-24T17:01:03.459956Z] 2 warnings generated. [2018-01-24T17:01:03.584838Z] c++ -o python/lsst/afw/math/approximate.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/approximate.cc [2018-01-24T17:01:03.919623Z] 2 warnings generated. [2018-01-24T17:01:04.042854Z] c++ -o python/lsst/afw/math/background.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/background.cc [2018-01-24T17:01:04.416729Z] 2 warnings generated. [2018-01-24T17:01:04.574234Z] 2 warnings generated. [2018-01-24T17:01:04.581924Z] c++ -o python/lsst/afw/math/warpExposure.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/warpExposure.cc [2018-01-24T17:01:04.739976Z] c++ -o python/lsst/afw/math/kernel.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/kernel.cc [2018-01-24T17:01:06.657407Z] 2 warnings generated. [2018-01-24T17:01:06.762974Z] c++ -o python/lsst/afw/math/detail/spline.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/detail/spline.cc [2018-01-24T17:01:09.007830Z] c++ -o python/lsst/afw/math/detail/convolve.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/math/detail/convolve.cc [2018-01-24T17:01:11.553759Z] c++ -o python/lsst/afw/table/aliasMap/aliasMap.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/aliasMap/aliasMap.cc [2018-01-24T17:01:12.649387Z] c++ -o python/lsst/afw/table/schema/schema.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/schema/schema.cc [2018-01-24T17:01:14.709133Z] In file included from python/lsst/afw/table/schema/schema.cc:28: [2018-01-24T17:01:14.709434Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:01:14.709669Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:01:14.709901Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:01:14.710332Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:01:14.710457Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:01:14.710493Z] ^ [2018-01-24T17:01:15.504430Z] c++ -o python/lsst/afw/table/schemaMapper/schemaMapper.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/schemaMapper/schemaMapper.cc [2018-01-24T17:01:15.963425Z] In file included from python/lsst/afw/table/schema/schema.cc:29: [2018-01-24T17:01:15.963744Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:01:15.964187Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:01:15.964466Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:01:15.964523Z] ^ [2018-01-24T17:01:17.491593Z] c++ -o python/lsst/afw/table/base/base.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/base/base.cc [2018-01-24T17:01:17.939412Z] c++ -o python/lsst/afw/table/baseColumnView/baseColumnView.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/baseColumnView/baseColumnView.cc [2018-01-24T17:01:19.064740Z] In file included from python/lsst/afw/table/base/base.cc:33: [2018-01-24T17:01:19.065047Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:01:19.065285Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:01:19.065511Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:01:19.065960Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:01:19.066091Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:01:19.066124Z] ^ [2018-01-24T17:01:20.073605Z] In file included from python/lsst/afw/table/baseColumnView/baseColumnView.cc:26: [2018-01-24T17:01:20.073896Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:01:20.074131Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:01:20.074386Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:01:20.074817Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:01:20.074944Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:01:20.074981Z] ^ [2018-01-24T17:01:20.319361Z] c++ -o python/lsst/afw/table/arrays/arrays.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/arrays/arrays.cc [2018-01-24T17:01:20.695996Z] In file included from python/lsst/afw/table/base/base.cc:34: [2018-01-24T17:01:20.696255Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:01:20.696641Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:01:20.696871Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:01:20.696911Z] ^ [2018-01-24T17:01:20.879280Z] c++ -o python/lsst/afw/table/aggregates/aggregates.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/aggregates/aggregates.cc [2018-01-24T17:01:21.029075Z] c++ -o python/lsst/afw/table/slots.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/slots.cc [2018-01-24T17:01:21.176194Z] c++ -o python/lsst/afw/table/simple/simple.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/simple/simple.cc [2018-01-24T17:01:21.333857Z] In file included from python/lsst/afw/table/baseColumnView/baseColumnView.cc:27: [2018-01-24T17:01:21.334147Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:01:21.334623Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:01:21.334880Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:01:21.334930Z] ^ [2018-01-24T17:01:22.309989Z] In file included from python/lsst/afw/table/arrays/arrays.cc:26: [2018-01-24T17:01:22.310315Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:01:22.310605Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:01:22.310846Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:01:22.311276Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:01:22.311403Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:01:22.311438Z] ^ [2018-01-24T17:01:22.682503Z] In file included from python/lsst/afw/table/simple/simple.cc:24: [2018-01-24T17:01:22.683044Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:01:22.683360Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:01:22.683647Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:01:22.684183Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:01:22.684393Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:01:22.684443Z] ^ [2018-01-24T17:01:22.832643Z] In file included from python/lsst/afw/table/aggregates/aggregates.cc:26: [2018-01-24T17:01:22.833279Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:01:22.834056Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:01:22.834298Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:01:22.834732Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:01:22.834863Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:01:22.836405Z] ^ [2018-01-24T17:01:23.128244Z] c++ -o python/lsst/afw/table/source/source.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/source/source.cc [2018-01-24T17:01:23.553506Z] In file included from python/lsst/afw/table/arrays/arrays.cc:27: [2018-01-24T17:01:23.553837Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:01:23.554253Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:01:23.554490Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:01:23.554534Z] ^ [2018-01-24T17:01:24.041171Z] In file included from python/lsst/afw/table/aggregates/aggregates.cc:27: [2018-01-24T17:01:24.041490Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:01:24.041951Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:01:24.042231Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:01:24.042286Z] ^ [2018-01-24T17:01:24.152025Z] In file included from python/lsst/afw/table/simple/simple.cc:25: [2018-01-24T17:01:24.152334Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:01:24.152798Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:01:24.153050Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:01:24.153100Z] ^ [2018-01-24T17:01:24.480717Z] In file included from python/lsst/afw/table/source/source.cc:27: [2018-01-24T17:01:24.481429Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: [2018-01-24T17:01:24.481724Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: [2018-01-24T17:01:24.481958Z] In file included from /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809: [2018-01-24T17:01:24.482409Z] /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [2018-01-24T17:01:24.482535Z] #warning "Using deprecated NumPy API, disable it by " \ [2018-01-24T17:01:24.482568Z] ^ [2018-01-24T17:01:25.682269Z] c++ -o lib/libafw.dylib -dynamiclib -install_name libafw.dylib -Wl,-headerpad_max_install_names src/cameraGeom/CameraPoint.os src/cameraGeom/CameraSys.os src/cameraGeom/Detector.os src/cameraGeom/Orientation.os src/cameraGeom/TransformMap.os src/coord/Coord.os src/coord/Observatory.os src/coord/Weather.os src/detection/Footprint.os src/detection/FootprintMerge.os src/detection/FootprintSet.os src/detection/GaussianPsf.os src/detection/HeavyFootprint.os src/detection/Peak.os src/detection/Psf.os src/detection/PsfFormatter.os src/detection/Threshold.os src/fits.os src/fitsCompression.os src/formatters/DecoratedImageFormatter.os src/formatters/ExposureFormatter.os src/formatters/ImageFormatter.os src/formatters/KernelFormatter.os src/formatters/MaskFormatter.os src/formatters/MaskedImageFormatter.os src/formatters/PropertyListFormatter.os src/formatters/TanWcsFormatter.os src/formatters/Utils.os src/formatters/WcsFormatter.os src/geom/AffineTransform.os src/geom/AffineXYTransform.os src/geom/Angle.os src/geom/Box.os src/geom/CoordinateBase.os src/geom/CoordinateExpr.os src/geom/Endpoint.os src/geom/Extent.os src/geom/Functor.os src/geom/IdentityXYTransform.os src/geom/InvertedXYTransform.os src/geom/LinearFunctor.os src/geom/LinearTransform.os src/geom/MultiXYTransform.os src/geom/Point.os src/geom/RadialXYTransform.os src/geom/SeparableXYTransform.os src/geom/SkyWcs.os src/geom/Span.os src/geom/SpanSet.os src/geom/SpherePoint.os src/geom/Transform.os src/geom/XYTransform.os src/geom/detail/frameSetUtils.os src/geom/ellipses/Axes.os src/geom/ellipses/BaseCore.os src/geom/ellipses/ConformalShear.os src/geom/ellipses/Convolution.os src/geom/ellipses/Distortion.os src/geom/ellipses/Ellipse.os src/geom/ellipses/GridTransform.os src/geom/ellipses/Parametric.os src/geom/ellipses/PixelRegion.os src/geom/ellipses/Quadrupole.os src/geom/ellipses/ReducedShear.os src/geom/ellipses/Separable.os src/geom/ellipses/Transformer.os src/geom/ellipses/radii.os src/geom/polygon/Polygon.os src/geom/transformFactory.os src/geom/wcsUtils.os src/image/ApCorrMap.os src/image/Calib.os src/image/CoaddInputs.os src/image/DecoratedImage.os src/image/DistortedTanWcs.os src/image/Exposure.os src/image/ExposureInfo.os src/image/Filter.os src/image/Image.os src/image/ImagePca.os src/image/ImageSlice.os src/image/Mask.os src/image/MaskedImage.os src/image/PhotoCalib.os src/image/TanWcs.os src/image/TransmissionCurve.os src/image/VisitInfo.os src/image/Wcs.os src/image/makeWcs.os src/math/AnalyticKernel.os src/math/Approximate.os src/math/Background.os src/math/BackgroundMI.os src/math/BoundedField.os src/math/ChebyshevBoundedField.os src/math/ConvolveImage.os src/math/DeltaFunctionKernel.os src/math/FixedKernel.os src/math/Function.os src/math/FunctionLibrary.os src/math/GaussianProcess.os src/math/Interpolate.os src/math/Kernel.os src/math/KernelFunctions.os src/math/KernelPersistenceHelper.os src/math/LeastSquares.os src/math/LinearCombinationKernel.os src/math/Random.os src/math/RandomImage.os src/math/SeparableKernel.os src/math/SpatialCell.os src/math/Spline.os src/math/Stack.os src/math/Statistics.os src/math/TransformBoundedField.os src/math/binImage.os src/math/detail/BasicConvolve.os src/math/detail/ConvolveWithInterpolation.os src/math/detail/KernelImagesForRegion.os src/math/detail/TrapezoidalPacker.os src/math/minimize.os src/math/offsetImage.os src/math/rotateImage.os src/math/warpExposure.os src/table/AliasMap.os src/table/AmpInfo.os src/table/BaseColumnView.os src/table/BaseRecord.os src/table/BaseTable.os src/table/Exposure.os src/table/FieldBase.os src/table/IdFactory.os src/table/KeyBase.os src/table/Match.os src/table/Schema.os src/table/SchemaMapper.os src/table/Simple.os src/table/Source.os src/table/aggregates.os src/table/arrays.os src/table/io/ArchiveIndexSchema.os src/table/io/FitsReader.os src/table/io/FitsSchemaInputMapper.os src/table/io/FitsWriter.os src/table/io/InputArchive.os src/table/io/OutputArchive.os src/table/io/Persistable.os src/table/slots.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:01:25.898714Z] In file included from python/lsst/afw/table/source/source.cc:28: [2018-01-24T17:01:25.898964Z] In file included from /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/pybind11.h:48: [2018-01-24T17:01:25.899380Z] /Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include/ndarray/converter/numpy.h:15:9: warning: ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings [-W#pragma-messages] [2018-01-24T17:01:25.899649Z] #pragma message ( "ndarray is compatible with the NumPy 1.7 API, define NPY_NO_DEPRECATED_API to suppress API version warnings" ) [2018-01-24T17:01:25.899701Z] ^ [2018-01-24T17:01:26.896363Z] c++ -o python/lsst/afw/table/match/match.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/match/match.cc [2018-01-24T17:01:28.261074Z] c++ -o python/lsst/afw/math/_interpolate.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/interpolate.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:28.792927Z] c++ -o python/lsst/afw/math/_chebyshevBoundedField.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/chebyshevBoundedField.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:29.288755Z] c++ -o python/lsst/afw/image/photoCalib.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/photoCalib.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:29.734531Z] c++ -o python/lsst/afw/math/_offsetImage.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/offsetImage.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:30.700752Z] c++ -o python/lsst/afw/image/filter.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/filter.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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-lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:31.220505Z] c++ -o python/lsst/afw/image/exposure/exposure.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/exposure/exposure.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:32.752509Z] c++ -o python/lsst/afw/image/mask/mask.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/mask/mask.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:33.329318Z] c++ -o python/lsst/afw/geom/endpoint.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/endpoint.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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python/lsst/afw/image/distortedTanWcs.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:34.862138Z] c++ -o python/lsst/afw/math/_background.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/background.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:35.093523Z] c++ -o python/lsst/afw/geom/ellipses/_pixelRegion.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/ellipses/pixelRegion.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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-lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:35.416788Z] c++ -o python/lsst/afw/image/pixel/pixel.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/pixel/pixel.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ 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python/lsst/afw/detection/heavyFootprint.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ 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-L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:35.980724Z] 2 warnings generated. [2018-01-24T17:01:36.362362Z] c++ -o python/lsst/afw/image/image/image.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/image/image.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ 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-L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:36.473749Z] c++ -o python/lsst/afw/image/apCorrMap/apCorrMap.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/apCorrMap/apCorrMap.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:36.517409Z] c++ -o python/lsst/afw/geom/spanSet.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/spanSet.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:37.228951Z] c++ -o python/lsst/afw/geom/wcsUtils/wcsUtils.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/wcsUtils/wcsUtils.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:37.276939Z] c++ -o python/lsst/afw/geom/spherePoint/spherePoint.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/spherePoint/spherePoint.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:37.333453Z] c++ -o python/lsst/afw/cameraGeom/_cameraPoint.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/cameraGeom/cameraPoint.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:37.876658Z] c++ -o python/lsst/afw/math/_minimize.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/minimize.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ 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-lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:37.928415Z] c++ -o python/lsst/afw/geom/ellipses/_baseCore.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/ellipses/baseCore.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ 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c++ -o python/lsst/afw/geom/ellipses/_conformalShear.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/ellipses/conformalShear.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:38.381437Z] 2 warnings generated. [2018-01-24T17:01:38.829474Z] c++ -o python/lsst/afw/math/detail/_convolve.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/detail/convolve.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ 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c++ -o python/lsst/afw/image/wcs/wcs.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/wcs/wcs.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:39.933053Z] c++ -o python/lsst/afw/detection/_psf.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/detection/psf.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ 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-lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:39.986013Z] c++ -o python/lsst/afw/math/_spatialCell.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/spatialCell.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ 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c++ -o python/lsst/afw/geom/angle/angle.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/angle/angle.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:40.209156Z] c++ -o python/lsst/afw/geom/polygon/_polygon.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/polygon/polygon.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:40.249601Z] c++ -o python/lsst/afw/math/_leastSquares.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/leastSquares.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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-lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:40.342095Z] 2 warnings generated. 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c++ -o python/lsst/afw/image/color.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/color.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:41.406228Z] c++ -o python/lsst/afw/math/detail/_spline.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/detail/spline.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:41.989317Z] c++ -o python/lsst/afw/geom/box.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/box.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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-lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:42.220074Z] c++ -o python/lsst/afw/geom/skyWcs/skyWcs.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/skyWcs/skyWcs.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ 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c++ -o python/lsst/afw/image/readMetadata.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/readMetadata.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:43.002490Z] c++ -o python/lsst/afw/geom/ellipses/_reducedShear.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/ellipses/reducedShear.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:43.047160Z] c++ -o python/lsst/afw/detection/_footprint.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/detection/footprint.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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-lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:43.101328Z] c++ -o python/lsst/afw/cameraGeom/_cameraSys.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/cameraGeom/cameraSys.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ 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python/lsst/afw/math/stack.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:43.271661Z] c++ -o python/lsst/afw/geom/coordinates/coordinates.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/coordinates/coordinates.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:43.328231Z] c++ -o python/lsst/afw/geom/ellipses/_ellipse.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/ellipses/ellipse.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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-lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:43.374861Z] c++ -o python/lsst/afw/detection/_footprintSet.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/detection/footprintSet.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ 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-last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:44.116688Z] c++ -o python/lsst/afw/image/imagePca.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/imagePca.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:44.332916Z] c++ -o python/lsst/afw/image/calib.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/calib.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ 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-lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:44.383230Z] c++ -o python/lsst/afw/detection/_footprintMerge.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/detection/footprintMerge.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ 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c++ -o python/lsst/afw/math/_random.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/random.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:45.219732Z] c++ -o python/lsst/afw/display/_simpleFits.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/display/simpleFits.os python/lsst/afw/display/_simpleFits.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:45.270303Z] c++ -o python/lsst/afw/image/imageSlice.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/image/imageSlice.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ 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-lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:45.320514Z] c++ -o python/lsst/afw/geom/separableXYTransform.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/separableXYTransform.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ 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-lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:46.177144Z] c++ -o python/lsst/afw/geom/xyTransform.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/xyTransform.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ 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python/lsst/afw/image/coaddInputs.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ 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-L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:46.320010Z] c++ -o python/lsst/afw/geom/transform/transform.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/geom/transform/transform.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ 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-lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:46.374699Z] c++ -o python/lsst/afw/fits/_fits.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/fits/fits.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:46.425492Z] c++ -o python/lsst/afw/detection/_threshold.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/detection/threshold.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:46.579999Z] c++ -o python/lsst/afw/table/ampInfo/ampInfo.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/ampInfo/ampInfo.cc [2018-01-24T17:01:46.704636Z] c++ -o python/lsst/afw/table/exposure/exposure.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/exposure/exposure.cc [2018-01-24T17:01:46.786419Z] c++ -o python/lsst/afw/table/idFactory.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/idFactory.cc [2018-01-24T17:01:47.124727Z] c++ -o python/lsst/afw/table/io/persistable.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include python/lsst/afw/table/io/persistable.cc [2018-01-24T17:01:47.288331Z] c++ -o tests/testTableArchivesLib.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/testTableArchivesLib.cc [2018-01-24T17:01:47.388863Z] rewrite_shebang(["bin/showCamera.py"], ["bin.src/showCamera.py"]) [2018-01-24T17:01:47.495030Z] c++ -o tests/background.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/background.cc [2018-01-24T17:01:47.565512Z] c++ -o tests/checkTypeConversions.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/checkTypeConversions.cc [2018-01-24T17:01:47.640345Z] c++ -o tests/coord.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/coord.cc [2018-01-24T17:01:47.715744Z] c++ -o tests/coordinates.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/coordinates.cc [2018-01-24T17:01:47.804888Z] c++ -o python/lsst/afw/math/_convolveImage.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/math/convolveImage.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:48.270010Z] c++ -o tests/decoratedImage.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/decoratedImage.cc [2018-01-24T17:01:48.479644Z] c++ -o tests/ellipse.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/ellipse.cc [2018-01-24T17:01:51.504381Z] c++ -o tests/coordinates tests/coordinates.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:01:52.636076Z] running tests/coordinates... c++ -o tests/coord tests/coord.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:01:52.832221Z] passed [2018-01-24T17:01:52.964457Z] c++ -o tests/footprint1.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/footprint1.cc [2018-01-24T17:01:53.651124Z] running tests/coord... 2 warnings generated. [2018-01-24T17:01:53.805875Z] c++ -o python/lsst/afw/table/simple/simple.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/simple/simple.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:54.113727Z] passed [2018-01-24T17:01:54.201776Z] c++ -o tests/image.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/image.cc [2018-01-24T17:01:54.320443Z] c++ -o tests/integrate.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/integrate.cc [2018-01-24T17:01:55.412050Z] c++ -o tests/decoratedImage tests/decoratedImage.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:01:56.224791Z] running tests/decoratedImage... c++ -o python/lsst/afw/table/idFactory.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/idFactory.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:56.248352Z] 2 warnings generated. [2018-01-24T17:01:56.414484Z] c++ -o python/lsst/afw/table/base/base.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/base/base.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:56.740641Z] c++ -o tests/interpolate.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/interpolate.cc [2018-01-24T17:01:56.766787Z] passed [2018-01-24T17:01:56.858705Z] c++ -o tests/maskedImage.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/maskedImage.cc [2018-01-24T17:01:57.107484Z] c++ -o tests/maskedImage1.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/maskedImage1.cc [2018-01-24T17:01:58.057939Z] c++ -o tests/background tests/background.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:01:58.972037Z] running tests/background... 2 warnings generated. [2018-01-24T17:01:59.137222Z] c++ -o python/lsst/afw/table/source/source.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/source/source.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:59.545909Z] 2 warnings generated. [2018-01-24T17:01:59.581669Z] c++ -o python/lsst/afw/table/io/persistable.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/io/persistable.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:01:59.828804Z] failed [2018-01-24T17:01:59.868866Z] c++ -o tests/interpolate tests/interpolate.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:01:59.919666Z] c++ -o python/lsst/afw/table/aggregates/aggregates.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/aggregates/aggregates.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:02:00.054671Z] c++ -o tests/ramFitsIO.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/ramFitsIO.cc [2018-01-24T17:02:00.247157Z] c++ -o tests/rowColumnStats.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/rowColumnStats.cc [2018-01-24T17:02:00.427242Z] running tests/interpolate... c++ -o tests/sipterms.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/sipterms.cc [2018-01-24T17:02:00.615182Z] c++ -o tests/sourceMatch1.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/sourceMatch1.cc [2018-01-24T17:02:01.258353Z] passed [2018-01-24T17:02:01.343079Z] c++ -o tests/stacker.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/stacker.cc [2018-01-24T17:02:03.060675Z] c++ -o tests/image tests/image.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:04.347359Z] running tests/image... passed [2018-01-24T17:02:04.433827Z] c++ -o tests/statistics.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/statistics.cc [2018-01-24T17:02:05.291717Z] c++ -o tests/footprint1 tests/footprint1.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:06.494955Z] running tests/footprint1... passed [2018-01-24T17:02:06.582354Z] c++ -o tests/statisticsSpeed.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/statisticsSpeed.cc [2018-01-24T17:02:06.700850Z] c++ -o tests/_testTableArchivesLib.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names tests/testTableArchivesLib.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:02:07.255594Z] c++ -o tests/test_endpoint.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_endpoint.cc [2018-01-24T17:02:08.399795Z] c++ -o tests/rowColumnStats tests/rowColumnStats.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:08.501544Z] c++ -o tests/maskedImage tests/maskedImage.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:08.751165Z] c++ -o tests/integrate tests/integrate.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:08.976324Z] running tests/rowColumnStats... c++ -o tests/maskedImage1 tests/maskedImage1.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:09.775627Z] running tests/maskedImage... running tests/integrate... running tests/maskedImage1... c++ -o tests/stacker tests/stacker.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:09.926622Z] c++ -o tests/checkTypeConversions tests/checkTypeConversions.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:09.945062Z] passed [2018-01-24T17:02:10.066551Z] passed [2018-01-24T17:02:10.072000Z] c++ -o tests/test_fitsTables.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_fitsTables.cc [2018-01-24T17:02:10.256588Z] running tests/stacker... passed [2018-01-24T17:02:10.298089Z] c++ -o tests/test_spanSets.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_spanSets.cc [2018-01-24T17:02:10.330763Z] failed [2018-01-24T17:02:10.461121Z] c++ -o tests/test_spherePoint.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_spherePoint.cc [2018-01-24T17:02:10.620196Z] running tests/checkTypeConversions... c++ -o tests/test_tableAliases.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_tableAliases.cc [2018-01-24T17:02:11.233614Z] passed [2018-01-24T17:02:11.362275Z] c++ -o tests/test_tableArchives.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_tableArchives.cc [2018-01-24T17:02:11.637351Z] passed [2018-01-24T17:02:11.726147Z] c++ -o tests/test_transform.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_transform.cc [2018-01-24T17:02:12.747615Z] c++ -o tests/ramFitsIO tests/ramFitsIO.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:12.920880Z] c++ -o tests/sipterms tests/sipterms.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:13.583075Z] running tests/ramFitsIO... running tests/sipterms... c++ -o tests/statistics tests/statistics.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:14.357555Z] running tests/statistics... failed [2018-01-24T17:02:14.420617Z] passed [2018-01-24T17:02:14.448334Z] c++ -o tests/test_trapezoidalPacker.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_trapezoidalPacker.cc [2018-01-24T17:02:14.555135Z] c++ -o tests/test_wcs.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/test_wcs.cc [2018-01-24T17:02:14.619987Z] c++ -o tests/statisticsSpeed tests/statisticsSpeed.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:14.808865Z] c++ -o tests/sourceMatch1 tests/sourceMatch1.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:14.870985Z] failed [2018-01-24T17:02:15.008009Z] c++ -o tests/ticket1145.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include tests/ticket1145.cc [2018-01-24T17:02:15.643201Z] running tests/statisticsSpeed... running tests/sourceMatch1... c++ -o tests/test_endpoint tests/test_endpoint.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:16.093622Z] running tests/test_endpoint... c++ -o tests/test_spherePoint tests/test_spherePoint.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:16.565074Z] passed [2018-01-24T17:02:16.653500Z] running tests/test_spherePoint... c++ -o examples/Spline.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/Spline.cc [2018-01-24T17:02:16.914840Z] passed [2018-01-24T17:02:17.028165Z] c++ -o examples/analyticKernel.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/analyticKernel.cc [2018-01-24T17:02:17.586803Z] passed [2018-01-24T17:02:17.713510Z] c++ -o examples/chebyshev1Function.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/chebyshev1Function.cc [2018-01-24T17:02:17.947746Z] c++ -o examples/Spline examples/Spline.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:18.236992Z] c++ -o examples/convolveLinear.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/convolveLinear.cc [2018-01-24T17:02:18.670957Z] passed [2018-01-24T17:02:18.741319Z] c++ -o examples/decoratedImage.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/decoratedImage.cc [2018-01-24T17:02:19.799368Z] c++ -o tests/test_transform tests/test_transform.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:21.196027Z] running tests/test_transform... passed [2018-01-24T17:02:21.308986Z] c++ -o examples/deltaFunctionKernels.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/deltaFunctionKernels.cc [2018-01-24T17:02:22.203601Z] c++ -o tests/test_tableAliases tests/test_tableAliases.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:22.839048Z] running tests/test_tableAliases... c++ -o tests/ticket1145 tests/ticket1145.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:23.601050Z] running tests/ticket1145... passed [2018-01-24T17:02:23.709976Z] c++ -o python/lsst/afw/table/ampInfo/ampInfo.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/ampInfo/ampInfo.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:02:23.849258Z] c++ -o examples/fitsMemLeak.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/fitsMemLeak.cc [2018-01-24T17:02:23.911079Z] c++ -o tests/test_trapezoidalPacker tests/test_trapezoidalPacker.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:24.212250Z] passed [2018-01-24T17:02:24.372779Z] running tests/test_trapezoidalPacker... c++ -o examples/fixedKernel.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/fixedKernel.cc [2018-01-24T17:02:24.473442Z] c++ -o examples/forEachPixel.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/forEachPixel.cc [2018-01-24T17:02:25.077549Z] c++ -o tests/test_wcs tests/test_wcs.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:25.375873Z] c++ -o examples/decoratedImage examples/decoratedImage.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:25.388400Z] passed [2018-01-24T17:02:25.550840Z] c++ -o examples/gaussianFunction.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/gaussianFunction.cc [2018-01-24T17:02:25.677101Z] running tests/test_wcs... c++ -o examples/image.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/image.cc [2018-01-24T17:02:25.923797Z] c++ -o tests/test_fitsTables tests/test_fitsTables.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:26.507586Z] running tests/test_fitsTables... passed [2018-01-24T17:02:26.574062Z] c++ -o examples/image1.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/image1.cc [2018-01-24T17:02:26.993524Z] c++ -o python/lsst/afw/table/exposure/exposure.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/exposure/exposure.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:02:27.169811Z] failed [2018-01-24T17:02:27.237420Z] c++ -o examples/image2.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/image2.cc [2018-01-24T17:02:27.592059Z] c++ -o examples/imageBackground.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/imageBackground.cc [2018-01-24T17:02:29.111962Z] c++ -o examples/chebyshev1Function examples/chebyshev1Function.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:29.419018Z] c++ -o examples/imageStatistics.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/imageStatistics.cc [2018-01-24T17:02:30.032846Z] c++ -o tests/test_spanSets tests/test_spanSets.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:31.008673Z] running tests/test_spanSets... c++ -o examples/analyticKernel examples/analyticKernel.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:31.245760Z] passed [2018-01-24T17:02:31.304692Z] c++ -o examples/integrateCartesian.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/integrateCartesian.cc [2018-01-24T17:02:31.356622Z] c++ -o examples/integrateExample.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/integrateExample.cc [2018-01-24T17:02:31.879608Z] c++ -o examples/convolveLinear examples/convolveLinear.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:32.125570Z] c++ -o examples/integratePolar.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/integratePolar.cc [2018-01-24T17:02:33.006672Z] c++ -o examples/image examples/image.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:33.077498Z] c++ -o examples/image1 examples/image1.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:33.370626Z] c++ -o examples/lanczosFunction.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/lanczosFunction.cc [2018-01-24T17:02:33.484318Z] c++ -o examples/lanczosKernel.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/lanczosKernel.cc [2018-01-24T17:02:33.549419Z] c++ -o examples/forEachPixel examples/forEachPixel.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:33.852427Z] c++ -o examples/mask.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/mask.cc [2018-01-24T17:02:33.909840Z] c++ -o examples/image2 examples/image2.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:34.207640Z] c++ -o examples/maskIo2.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/maskIo2.cc [2018-01-24T17:02:34.595274Z] c++ -o examples/deltaFunctionKernels examples/deltaFunctionKernels.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:34.930902Z] c++ -o examples/maskedImage.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/maskedImage.cc [2018-01-24T17:02:35.520253Z] c++ -o examples/fitsMemLeak examples/fitsMemLeak.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:35.749742Z] c++ -o tests/test_tableArchives tests/test_tableArchives.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:35.838635Z] c++ -o examples/maskedImage1.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/maskedImage1.cc [2018-01-24T17:02:36.286735Z] running tests/test_tableArchives... c++ -o examples/imageBackground examples/imageBackground.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:36.536910Z] c++ -o examples/maskedImage2.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/maskedImage2.cc [2018-01-24T17:02:36.716114Z] c++ -o examples/gaussianFunction examples/gaussianFunction.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:37.033894Z] failed [2018-01-24T17:02:37.118312Z] c++ -o examples/maskedImageFitsIo.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/maskedImageFitsIo.cc [2018-01-24T17:02:37.197650Z] 2 warnings generated. [2018-01-24T17:02:37.291761Z] c++ -o examples/minimize.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/minimize.cc [2018-01-24T17:02:37.413083Z] c++ -o python/lsst/afw/table/schema/schema.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names python/lsst/afw/table/schema/schema.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:02:37.458715Z] c++ -o examples/imageStatistics examples/imageStatistics.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:37.774506Z] c++ -o examples/polynomialFunction.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/polynomialFunction.cc [2018-01-24T17:02:38.117359Z] c++ -o examples/rowColumnStats.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/rowColumnStats.cc [2018-01-24T17:02:38.508478Z] c++ -o examples/fixedKernel examples/fixedKernel.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:38.816059Z] c++ -o examples/simpleConvolve.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/simpleConvolve.cc [2018-01-24T17:02:41.205443Z] c++ -o examples/integrateExample examples/integrateExample.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:41.512196Z] c++ -o examples/simpleStacker.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/simpleStacker.cc [2018-01-24T17:02:41.905883Z] c++ -o examples/integratePolar examples/integratePolar.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:42.274396Z] c++ -o examples/spatiallyVaryingConvolve.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/spatiallyVaryingConvolve.cc [2018-01-24T17:02:43.509837Z] c++ -o examples/maskedImage1 examples/maskedImage1.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:43.791808Z] c++ -o examples/maskedImageFitsIo examples/maskedImageFitsIo.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:43.849753Z] c++ -o examples/splineInterpolate.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/splineInterpolate.cc [2018-01-24T17:02:44.033022Z] c++ -o examples/statistics.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/statistics.cc [2018-01-24T17:02:44.545921Z] c++ -o examples/maskedImage examples/maskedImage.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:44.644348Z] c++ -o examples/integrateCartesian examples/integrateCartesian.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:44.747123Z] c++ -o examples/maskedImage2 examples/maskedImage2.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:44.839663Z] c++ -o examples/ticket647.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/ticket647.cc [2018-01-24T17:02:44.915841Z] c++ -o examples/lanczosFunction examples/lanczosFunction.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:45.036610Z] c++ -o examples/timeConvolve.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/timeConvolve.cc [2018-01-24T17:02:45.169597Z] c++ -o examples/timeImageAddition.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/timeImageAddition.cc [2018-01-24T17:02:45.240905Z] c++ -o examples/splineInterpolate examples/splineInterpolate.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:45.364240Z] c++ -o examples/timeImageIterators.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/timeImageIterators.cc [2018-01-24T17:02:45.570980Z] c++ -o examples/timePixelAccess.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/timePixelAccess.cc [2018-01-24T17:02:45.625732Z] c++ -o examples/rowColumnStats examples/rowColumnStats.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:45.737151Z] c++ -o examples/mask examples/mask.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:45.791846Z] c++ -o examples/maskIo2 examples/maskIo2.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:45.838208Z] c++ -o examples/lanczosKernel examples/lanczosKernel.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:45.909087Z] c++ -o examples/timePixelAccessGil.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/timePixelAccessGil.cc [2018-01-24T17:02:46.048975Z] c++ -o examples/timeWcs.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/timeWcs.cc [2018-01-24T17:02:46.155594Z] c++ -o examples/transform.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/transform.cc [2018-01-24T17:02:46.288706Z] c++ -o examples/wcsTest.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/wcsTest.cc [2018-01-24T17:02:48.957833Z] c++ -o examples/simpleStacker examples/simpleStacker.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:49.017727Z] c++ -o examples/minimize examples/minimize.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:49.291565Z] c++ -o examples/testSpatialCell.os -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -fPIC -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/testSpatialCell.cc [2018-01-24T17:02:49.364842Z] c++ -o examples/polynomialFunction examples/polynomialFunction.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:49.624019Z] c++ -o examples/spatialCellExample.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/spatialCellExample.cc [2018-01-24T17:02:49.684336Z] c++ -o examples/testSpatialCell.o -c -std=c++14 -g -DLSST_LITTLE_ENDIAN=1 -O3 -Wall -Wno-unused-function -Iinclude -I/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_config/14.0-2-g319577b+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/include -I/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/pybind11/2.1.1/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/eigen/3.2.5.lsst3/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/include -isystem /Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/include -isystem /Volumes/PS1/lsstsw/miniconda/include/python2.7 -isystem /Users/wmwv/lsstsw/miniconda/lib/python2.7/site-packages/numpy/core/include examples/testSpatialCell.cc [2018-01-24T17:02:50.661114Z] c++ -o examples/statistics examples/statistics.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:50.766000Z] c++ -o examples/timePixelAccessGil examples/timePixelAccessGil.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:50.852807Z] buildConfig(["doc/doxygen.conf"], ["doc/doxygen.conf.in"]) [2018-01-24T17:02:52.985562Z] doxygen /Volumes/PS1/lsstsw/build/afw/doc/doxygen.conf [2018-01-24T17:02:53.072685Z] c++ -o examples/simpleConvolve examples/simpleConvolve.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:53.118668Z] c++ -o examples/ticket647 examples/ticket647.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:55.107835Z] c++ -o examples/transform examples/transform.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:55.518207Z] c++ -o examples/timeConvolve examples/timeConvolve.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:55.784526Z] error: Tag file `/Volumes/PS1/lsstsw/stack/DarwinX86/ndarray/1.3.3.lsst1/doc/ndarray.tag' does not exist or is not a file. Skipping it... [2018-01-24T17:02:55.965797Z] c++ -o examples/timeImageAddition examples/timeImageAddition.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:56.273836Z] c++ -o examples/spatiallyVaryingConvolve examples/spatiallyVaryingConvolve.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:56.330697Z] c++ -o examples/timeImageIterators examples/timeImageIterators.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:56.998602Z] c++ -o examples/timeWcs examples/timeWcs.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:57.094133Z] c++ -o examples/wcsTest examples/wcsTest.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:57.520170Z] c++ -o examples/timePixelAccess examples/timePixelAccess.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:02:58.216310Z] c++ -o examples/_testSpatialCellLib.so -bundle -F/ -undefined suppress -flat_namespace -headerpad_max_install_names examples/testSpatialCell.os -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -ldl -lpython2.7 [2018-01-24T17:02:59.391349Z] c++ -o tests/ellipse tests/ellipse.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread -lboost_unit_test_framework [2018-01-24T17:02:59.938796Z] running tests/ellipse... /Volumes/PS1/lsstsw/build/afw/src/image/Mask.cc:846: warning: documented symbol `Mask< MaskPixelT > & lsst::afw::image::Mask< MaskPixelT >::operator &=' was not declared or defined. [2018-01-24T17:02:59.939057Z] /Volumes/PS1/lsstsw/build/afw/src/image/Mask.cc:852: warning: documented symbol `Mask< MaskPixelT > & lsst::afw::image::Mask< MaskPixelT >::operator &=' was not declared or defined. [2018-01-24T17:03:00.178314Z] passed [2018-01-24T17:03:00.244831Z] running global pytest... [2018-01-24T17:03:00.345205Z] afw_sec_image_algorithm:-1: warning: multiple use of section label 'afwSecImageAlgorithm', (first occurrence: /Volumes/PS1/lsstsw/build/afw/doc/imageAlgorithm.dox, line 4) [2018-01-24T17:03:00.345476Z] afw_sec_display:-1: warning: multiple use of section label 'afwSecDisplay', (first occurrence: /Volumes/PS1/lsstsw/build/afw/doc/imageDisplay.dox, line 4) [2018-01-24T17:03:00.345686Z] afw_sec_py_image:-1: warning: multiple use of section label 'afwSecPyImage', (first occurrence: /Volumes/PS1/lsstsw/build/afw/doc/imagePython.dox, line 4) [2018-01-24T17:03:00.346063Z] afw_sec_image:-1: warning: multiple use of section label 'afwSecImage', (first occurrence: /Volumes/PS1/lsstsw/build/afw/doc/mainpage.dox, line 24) [2018-01-24T17:03:00.346325Z] afw_sec_image_i_o:-1: warning: multiple use of section label 'afwSecImageIO', (first occurrence: /Volumes/PS1/lsstsw/build/afw/doc/mainpage.dox, line 217) [2018-01-24T17:03:00.346516Z] afw_sec_math:-1: warning: multiple use of section label 'afwSecMath', (first occurrence: /Volumes/PS1/lsstsw/build/afw/doc/mainpage.dox, line 291) [2018-01-24T17:03:00.346708Z] afw_sec_detection:-1: warning: multiple use of section label 'afwSecDetection', (first occurrence: /Volumes/PS1/lsstsw/build/afw/doc/mainpage.dox, line 311) [2018-01-24T17:03:00.361549Z] c++ -o examples/spatialCellExample examples/spatialCellExample.o examples/testSpatialCell.o -Llib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/astshim/14.0-11-g0e62142+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/starlink_ast/lsst-dev-g847d5fcbe3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/wcslib/5.13.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/cfitsio/3360.lsst5/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/gsl/2.4/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/minuit2/5.34.14/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/fftw/3.3.4.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_persistence/14.0-14-g87d16e8+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/mariadbclient/10.1.21.lsst2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_policy/14.0-1-g4b114ac+3/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log/14.0-2-ga5af9b6+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/log4cxx/0.10.0.lsst7/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/daf_base/14.0-5-g744ff5f/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/pex_exceptions/14.0-1-g13ef843+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/base/14.0-8-g7f6dd6b+2/lib/ -L/Volumes/PS1/lsstsw/stack/DarwinX86/boost/1.60.lsst1+2/lib/ -L/Volumes/PS1/lsstsw/miniconda/lib/python2.7/config/ -lafw -lastshim -last -last_pal -last_grf_2.0 -last_grf_3.2 -last_grf_5.6 -last_grf3d -last_pass2 -last_err -lm -lwcs -lcfitsio -lgsl -lgslcblas -lMinuit2 -lfftw3f -lfftw3 -ldaf_persistence -lboost_serialization -lmysqlclient_r -lpex_policy -lboost_filesystem -lboost_system -llog -llog4cxx -ldaf_base -lutils -lpex_exceptions -lbase -lboost_regex -lpthread [2018-01-24T17:03:03.827287Z] ============================= test session starts ============================== [2018-01-24T17:03:03.827450Z] platform darwin -- Python 2.7.12, pytest-3.2.0, py-1.4.34, pluggy-0.4.0 [2018-01-24T17:03:03.827529Z] rootdir: /Volumes/PS1/lsstsw/build/afw, inifile: [2018-01-24T17:03:03.827618Z] plugins: session2file-0.1.9, xdist-1.20.1, forked-0.2, flake8-0.9.1 [2018-01-24T17:03:03.895682Z] gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I [2018-01-24T17:03:15.003461Z] /Volumes/PS1/lsstsw/build/afw/python/lsst/afw/cameraGeom/camera.py:55: warning: The following parameters of lsst::afw::cameraGeom.camera.Camera.getPupilFactory(self, visitInfo, pupilSize, npix, kwargs) are not documented: [2018-01-24T17:03:15.003602Z] parameter 'kwargs' [2018-01-24T17:03:31.320775Z] /Volumes/PS1/lsstsw/build/afw/include/lsst/afw/image/Wcs.h:463: warning: argument 'fitsMetadata' of command @param is not found in the argument list of lsst::afw::image::TanWcs::makeWcs(std::shared_ptr< daf::base::PropertySet > const &metadata, bool stripMetadata=false) [2018-01-24T17:03:31.321280Z] /Volumes/PS1/lsstsw/build/afw/include/lsst/afw/image/TanWcs.h:170: warning: The following parameters of lsst::afw::image::TanWcs::makeWcs(std::shared_ptr< daf::base::PropertySet > const &metadata, bool stripMetadata=false) are not documented: [2018-01-24T17:03:31.321360Z] parameter 'metadata' [2018-01-24T17:03:46.455096Z] /Volumes/PS1/lsstsw/build/afw/python/lsst/afw/cameraGeom/camera.py:55: warning: The following parameters of lsst::afw::cameraGeom.camera.Camera.getPupilFactory(self, visitInfo, pupilSize, npix, kwargs) are not documented: [2018-01-24T17:03:46.455230Z] parameter 'kwargs' [2018-01-24T17:03:46.469979Z] gw0 [1336] / gw1 [1336] / gw2 [1336] / gw3 [1336] / gw4 [1336] / gw5 [1336] / gw6 [1336] / gw7 [1336] / gw8 [1336] / gw9 [1336] / gw10 [1336] / gw11 [1336] / gw12 [1336] / gw13 [1336] / gw14 [1336] / gw15 [1336] [2018-01-24T17:03:46.470013Z] [2018-01-24T17:03:46.470080Z] scheduling tests via LoadScheduling [2018-01-24T17:03:49.439736Z] ........F.FFF..F.FF...........................F.......F....F.F.FF.F...F..F...s.FF..F..............s....F.F..F................s.....F..s.....F....F...F..FFF.F...................F.F.........F..Fs.........Fs.......s.F........F...................s.s..../Volumes/PS1/lsstsw/build/afw/include/lsst/afw/image/Wcs.h:463: warning: argument 'fitsMetadata' of command @param is not found in the argument list of lsst::afw::image::TanWcs::makeWcs(std::shared_ptr< daf::base::PropertySet > const &metadata, bool stripMetadata=false) [2018-01-24T17:03:49.440187Z] /Volumes/PS1/lsstsw/build/afw/include/lsst/afw/image/TanWcs.h:170: warning: The following parameters of lsst::afw::image::TanWcs::makeWcs(std::shared_ptr< daf::base::PropertySet > const &metadata, bool stripMetadata=false) are not documented: [2018-01-24T17:03:49.440252Z] parameter 'metadata' [2018-01-24T17:04:11.890122Z] .F....F..FFF.F...FFFF.FFF..F.F.FF.F.............F......FFF.F..F.F..F......F...........F....FFF.....F..........F........F...FF............F..............F..........F...FF.F..F................F.......F....F....F..................F.F..........F.........FF........................................FF........F................F....................................FF.......F.......F.F.........F....FFF....F.F.F....F....F.F..F...FF.....F...F.FF.s..................F...F.....F.......F.ss...F..........................F.F...........F......F...........ss.....F.........F.F.FF..F.......................F........F........................................................F............F.........................................F.........F..........s...s................F.........................................F........F.F.....F................................F..F.F......F....F............F..............F.FF....F....FFF.F.F.FFFFFFF.sF.F.FF..F.F....FFFF.......FFF.FFFF.FFFFFFFFFFF.FFFFFF..F....F.F...........F..........F.F.....FFFFF...F.............F........F.F..........FFF..........F................F [2018-01-24T17:04:11.890331Z] generated xml file: /Volumes/PS1/lsstsw/build/afw/tests/.tests/pytest-afw.xml - [2018-01-24T17:04:11.890466Z] ==================================== ERRORS ==================================== [2018-01-24T17:04:11.890592Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.890668Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.890773Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.890828Z] E FitsError: [2018-01-24T17:04:11.891013Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.891232Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.891287Z] E cfitsio error stack: [2018-01-24T17:04:11.891318Z] E {0} [2018-01-24T17:04:11.891574Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.891631Z] E cfitsio error stack: [2018-01-24T17:04:11.891652Z] E ' [2018-01-24T17:04:11.891777Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.891796Z] [2018-01-24T17:04:11.891899Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.892020Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.892103Z] that was used when compiling the application program: [2018-01-24T17:04:11.892187Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.892277Z] Version included by the application program = 5 [2018-01-24T17:04:11.892295Z] [2018-01-24T17:04:11.892400Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.892458Z] with the CFITSIO library. [2018-01-24T17:04:11.892601Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.892678Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.892774Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.892806Z] E FitsError: [2018-01-24T17:04:11.892977Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.893214Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.893266Z] E cfitsio error stack: [2018-01-24T17:04:11.893301Z] E {0} [2018-01-24T17:04:11.893581Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.893640Z] E cfitsio error stack: [2018-01-24T17:04:11.893660Z] E ' [2018-01-24T17:04:11.893764Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.893778Z] [2018-01-24T17:04:11.893888Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.894002Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.894095Z] that was used when compiling the application program: [2018-01-24T17:04:11.894188Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.894294Z] Version included by the application program = 5 [2018-01-24T17:04:11.894310Z] [2018-01-24T17:04:11.894410Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.894458Z] with the CFITSIO library. [2018-01-24T17:04:11.894583Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.894651Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.894750Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.894822Z] E FitsError: [2018-01-24T17:04:11.895009Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.895218Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.895272Z] E cfitsio error stack: [2018-01-24T17:04:11.895296Z] E {0} [2018-01-24T17:04:11.895545Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.895594Z] E cfitsio error stack: [2018-01-24T17:04:11.895645Z] E ' [2018-01-24T17:04:11.895767Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.895784Z] [2018-01-24T17:04:11.895892Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.896059Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.896167Z] that was used when compiling the application program: [2018-01-24T17:04:11.896246Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.896316Z] Version included by the application program = 5 [2018-01-24T17:04:11.896329Z] [2018-01-24T17:04:11.896418Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.896460Z] with the CFITSIO library. [2018-01-24T17:04:11.896563Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.896632Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.896732Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.896765Z] E FitsError: [2018-01-24T17:04:11.896937Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.897159Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.897207Z] E cfitsio error stack: [2018-01-24T17:04:11.897230Z] E {0} [2018-01-24T17:04:11.897453Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.897495Z] E cfitsio error stack: [2018-01-24T17:04:11.897513Z] E ' [2018-01-24T17:04:11.897615Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.897628Z] [2018-01-24T17:04:11.897721Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.897819Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.897891Z] that was used when compiling the application program: [2018-01-24T17:04:11.897959Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.898028Z] Version included by the application program = 5 [2018-01-24T17:04:11.898045Z] [2018-01-24T17:04:11.898135Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.898175Z] with the CFITSIO library. [2018-01-24T17:04:11.898290Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.898357Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.898442Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.898472Z] E FitsError: [2018-01-24T17:04:11.898611Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.898810Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.898849Z] E cfitsio error stack: [2018-01-24T17:04:11.898870Z] E {0} [2018-01-24T17:04:11.899080Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.899120Z] E cfitsio error stack: [2018-01-24T17:04:11.899138Z] E ' [2018-01-24T17:04:11.899258Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.899280Z] [2018-01-24T17:04:11.899376Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.899477Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.899549Z] that was used when compiling the application program: [2018-01-24T17:04:11.899626Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.899696Z] Version included by the application program = 5 [2018-01-24T17:04:11.899709Z] [2018-01-24T17:04:11.899797Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.899839Z] with the CFITSIO library. [2018-01-24T17:04:11.899941Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.900008Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.900105Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.900134Z] E FitsError: [2018-01-24T17:04:11.900275Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.900465Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.900507Z] E cfitsio error stack: [2018-01-24T17:04:11.900534Z] E {0} [2018-01-24T17:04:11.900774Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.900820Z] E cfitsio error stack: [2018-01-24T17:04:11.900839Z] E ' [2018-01-24T17:04:11.900942Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.900955Z] [2018-01-24T17:04:11.901064Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.901210Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.901308Z] that was used when compiling the application program: [2018-01-24T17:04:11.901381Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.901451Z] Version included by the application program = 5 [2018-01-24T17:04:11.901464Z] [2018-01-24T17:04:11.901552Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.901593Z] with the CFITSIO library. [2018-01-24T17:04:11.901695Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.901750Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.901835Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.901865Z] E FitsError: [2018-01-24T17:04:11.902005Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.902205Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.902244Z] E cfitsio error stack: [2018-01-24T17:04:11.902278Z] E {0} [2018-01-24T17:04:11.902495Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.902536Z] E cfitsio error stack: [2018-01-24T17:04:11.902554Z] E ' [2018-01-24T17:04:11.902656Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.902697Z] [2018-01-24T17:04:11.902794Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.902893Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.902976Z] that was used when compiling the application program: [2018-01-24T17:04:11.903043Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.903110Z] Version included by the application program = 5 [2018-01-24T17:04:11.903122Z] [2018-01-24T17:04:11.903208Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.903261Z] with the CFITSIO library. [2018-01-24T17:04:11.903363Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.903419Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.903504Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.903534Z] E FitsError: [2018-01-24T17:04:11.903685Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.903868Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.903907Z] E cfitsio error stack: [2018-01-24T17:04:11.903928Z] E {0} [2018-01-24T17:04:11.904138Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.904178Z] E cfitsio error stack: [2018-01-24T17:04:11.904208Z] E ' [2018-01-24T17:04:11.904310Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.904322Z] [2018-01-24T17:04:11.904429Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.904538Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.904628Z] that was used when compiling the application program: [2018-01-24T17:04:11.904728Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.904841Z] Version included by the application program = 5 [2018-01-24T17:04:11.904863Z] [2018-01-24T17:04:11.904953Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.904994Z] with the CFITSIO library. [2018-01-24T17:04:11.905096Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.905151Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.905236Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.905265Z] E FitsError: [2018-01-24T17:04:11.905405Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.905591Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.905639Z] E cfitsio error stack: [2018-01-24T17:04:11.905662Z] E {0} [2018-01-24T17:04:11.905876Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.905916Z] E cfitsio error stack: [2018-01-24T17:04:11.905934Z] E ' [2018-01-24T17:04:11.906035Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.906048Z] [2018-01-24T17:04:11.906140Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.906239Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.906310Z] that was used when compiling the application program: [2018-01-24T17:04:11.906378Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.906447Z] Version included by the application program = 5 [2018-01-24T17:04:11.906460Z] [2018-01-24T17:04:11.906548Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.906588Z] with the CFITSIO library. [2018-01-24T17:04:11.906689Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.906746Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.906830Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.906860Z] E FitsError: [2018-01-24T17:04:11.907011Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.907210Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.907250Z] E cfitsio error stack: [2018-01-24T17:04:11.907272Z] E {0} [2018-01-24T17:04:11.907499Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.907539Z] E cfitsio error stack: [2018-01-24T17:04:11.907556Z] E ' [2018-01-24T17:04:11.907654Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.907667Z] [2018-01-24T17:04:11.907770Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.907868Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.907940Z] that was used when compiling the application program: [2018-01-24T17:04:11.908008Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.908076Z] Version included by the application program = 5 [2018-01-24T17:04:11.908089Z] [2018-01-24T17:04:11.908189Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.908241Z] with the CFITSIO library. [2018-01-24T17:04:11.908357Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.908430Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.908523Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.908555Z] E FitsError: [2018-01-24T17:04:11.908699Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.908882Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.908922Z] E cfitsio error stack: [2018-01-24T17:04:11.908943Z] E {0} [2018-01-24T17:04:11.909169Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.909210Z] E cfitsio error stack: [2018-01-24T17:04:11.909228Z] E ' [2018-01-24T17:04:11.909329Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.909342Z] [2018-01-24T17:04:11.909444Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.909545Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.909615Z] that was used when compiling the application program: [2018-01-24T17:04:11.909681Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.909749Z] Version included by the application program = 5 [2018-01-24T17:04:11.909761Z] [2018-01-24T17:04:11.909846Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.909886Z] with the CFITSIO library. [2018-01-24T17:04:11.910000Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.910055Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.910167Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.910200Z] E FitsError: [2018-01-24T17:04:11.910351Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.910533Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.910572Z] E cfitsio error stack: [2018-01-24T17:04:11.910594Z] E {0} [2018-01-24T17:04:11.910802Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.910842Z] E cfitsio error stack: [2018-01-24T17:04:11.910872Z] E ' [2018-01-24T17:04:11.910975Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.910988Z] [2018-01-24T17:04:11.911080Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.911181Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.911265Z] that was used when compiling the application program: [2018-01-24T17:04:11.911331Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.911397Z] Version included by the application program = 5 [2018-01-24T17:04:11.911409Z] [2018-01-24T17:04:11.911513Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.911555Z] with the CFITSIO library. [2018-01-24T17:04:11.911658Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.911723Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.911828Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.911861Z] E FitsError: [2018-01-24T17:04:11.912026Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.912234Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.912289Z] E cfitsio error stack: [2018-01-24T17:04:11.912314Z] E {0} [2018-01-24T17:04:11.912531Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.912573Z] E cfitsio error stack: [2018-01-24T17:04:11.912591Z] E ' [2018-01-24T17:04:11.912693Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.912706Z] [2018-01-24T17:04:11.912798Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.912897Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.912969Z] that was used when compiling the application program: [2018-01-24T17:04:11.913038Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.913107Z] Version included by the application program = 5 [2018-01-24T17:04:11.913120Z] [2018-01-24T17:04:11.913211Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.913252Z] with the CFITSIO library. [2018-01-24T17:04:11.913354Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.913409Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.913494Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.913524Z] E FitsError: [2018-01-24T17:04:11.913663Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.913851Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.913892Z] E cfitsio error stack: [2018-01-24T17:04:11.913914Z] E {0} [2018-01-24T17:04:11.914175Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.914226Z] E cfitsio error stack: [2018-01-24T17:04:11.914246Z] E ' [2018-01-24T17:04:11.914349Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.914362Z] [2018-01-24T17:04:11.914455Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.914555Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.914627Z] that was used when compiling the application program: [2018-01-24T17:04:11.914700Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.914771Z] Version included by the application program = 5 [2018-01-24T17:04:11.914783Z] [2018-01-24T17:04:11.914873Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.914913Z] with the CFITSIO library. [2018-01-24T17:04:11.915016Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.915071Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.915157Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.915187Z] E FitsError: [2018-01-24T17:04:11.915345Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.915586Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.915631Z] E cfitsio error stack: [2018-01-24T17:04:11.915654Z] E {0} [2018-01-24T17:04:11.915889Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.915932Z] E cfitsio error stack: [2018-01-24T17:04:11.915951Z] E ' [2018-01-24T17:04:11.916053Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.916067Z] [2018-01-24T17:04:11.916159Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.916258Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.916330Z] that was used when compiling the application program: [2018-01-24T17:04:11.916399Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.916468Z] Version included by the application program = 5 [2018-01-24T17:04:11.916481Z] [2018-01-24T17:04:11.916570Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.916610Z] with the CFITSIO library. [2018-01-24T17:04:11.916713Z] ___________________ ERROR collecting tests/test_convolve.py ____________________ [2018-01-24T17:04:11.916768Z] tests/test_convolve.py:65: in [2018-01-24T17:04:11.916854Z] FullMaskedImage = afwImage.MaskedImageF(InputMaskedImagePath) [2018-01-24T17:04:11.916884Z] E FitsError: [2018-01-24T17:04:11.917025Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.917214Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.917254Z] E cfitsio error stack: [2018-01-24T17:04:11.917278Z] E {0} [2018-01-24T17:04:11.917519Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:11.917560Z] E cfitsio error stack: [2018-01-24T17:04:11.917578Z] E ' [2018-01-24T17:04:11.917708Z] ------------------------------- Captured stdout -------------------------------- [2018-01-24T17:04:11.917724Z] [2018-01-24T17:04:11.917818Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.917917Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.917990Z] that was used when compiling the application program: [2018-01-24T17:04:11.918059Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.918128Z] Version included by the application program = 5 [2018-01-24T17:04:11.918141Z] [2018-01-24T17:04:11.918229Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.918271Z] with the CFITSIO library. [2018-01-24T17:04:11.918374Z] =================================== FAILURES =================================== [2018-01-24T17:04:11.918487Z] _____________________ SavingSubImagesTest.testSubSubImage ______________________ [2018-01-24T17:04:11.918594Z] [gw4] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.918607Z] [2018-01-24T17:04:11.918693Z] self = [2018-01-24T17:04:11.918705Z] [2018-01-24T17:04:11.918740Z] def setUp(self): [2018-01-24T17:04:11.918846Z] path = lsst.utils.getPackageDir("afw") [2018-01-24T17:04:11.918965Z] self.parentFile = os.path.join(path, "tests", "data", "parent.fits") [2018-01-24T17:04:11.918986Z] [2018-01-24T17:04:11.919085Z] > self.parent = afwImage.ExposureF(self.parentFile) [2018-01-24T17:04:11.919126Z] E FitsError: [2018-01-24T17:04:11.919310Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.919500Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.919546Z] E cfitsio error stack: [2018-01-24T17:04:11.919573Z] E {0} [2018-01-24T17:04:11.919779Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.919838Z] E cfitsio error stack: [2018-01-24T17:04:11.919861Z] E ' [2018-01-24T17:04:11.919873Z] [2018-01-24T17:04:11.919933Z] tests/test_1079.py:64: FitsError [2018-01-24T17:04:11.920036Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.920049Z] [2018-01-24T17:04:11.920142Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.920242Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.920314Z] that was used when compiling the application program: [2018-01-24T17:04:11.920399Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.920481Z] Version included by the application program = 5 [2018-01-24T17:04:11.920494Z] [2018-01-24T17:04:11.920583Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.920624Z] with the CFITSIO library. [2018-01-24T17:04:11.920726Z] ______________________ SavingSubImagesTest.testFitsHeader ______________________ [2018-01-24T17:04:11.920821Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.920833Z] [2018-01-24T17:04:11.920917Z] self = [2018-01-24T17:04:11.920930Z] [2018-01-24T17:04:11.920965Z] def setUp(self): [2018-01-24T17:04:11.921030Z] path = lsst.utils.getPackageDir("afw") [2018-01-24T17:04:11.921129Z] self.parentFile = os.path.join(path, "tests", "data", "parent.fits") [2018-01-24T17:04:11.921147Z] [2018-01-24T17:04:11.921227Z] > self.parent = afwImage.ExposureF(self.parentFile) [2018-01-24T17:04:11.921262Z] E FitsError: [2018-01-24T17:04:11.921408Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.921585Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.921630Z] E cfitsio error stack: [2018-01-24T17:04:11.921657Z] E {0} [2018-01-24T17:04:11.921865Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.921911Z] E cfitsio error stack: [2018-01-24T17:04:11.921935Z] E ' [2018-01-24T17:04:11.921948Z] [2018-01-24T17:04:11.921996Z] tests/test_1079.py:64: FitsError [2018-01-24T17:04:11.922105Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.922119Z] [2018-01-24T17:04:11.922213Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.922312Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.922408Z] that was used when compiling the application program: [2018-01-24T17:04:11.922492Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.922604Z] Version included by the application program = 5 [2018-01-24T17:04:11.922620Z] [2018-01-24T17:04:11.922736Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.922793Z] with the CFITSIO library. [2018-01-24T17:04:11.922919Z] __________________ SavingSubImagesTest.testInvarianceOfCrpix1 __________________ [2018-01-24T17:04:11.923021Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.923035Z] [2018-01-24T17:04:11.923129Z] self = [2018-01-24T17:04:11.923142Z] [2018-01-24T17:04:11.923177Z] def setUp(self): [2018-01-24T17:04:11.923241Z] path = lsst.utils.getPackageDir("afw") [2018-01-24T17:04:11.923338Z] self.parentFile = os.path.join(path, "tests", "data", "parent.fits") [2018-01-24T17:04:11.923356Z] [2018-01-24T17:04:11.923437Z] > self.parent = afwImage.ExposureF(self.parentFile) [2018-01-24T17:04:11.923472Z] E FitsError: [2018-01-24T17:04:11.923617Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.923795Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.923840Z] E cfitsio error stack: [2018-01-24T17:04:11.923865Z] E {0} [2018-01-24T17:04:11.924070Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.924116Z] E cfitsio error stack: [2018-01-24T17:04:11.924138Z] E ' [2018-01-24T17:04:11.924152Z] [2018-01-24T17:04:11.924200Z] tests/test_1079.py:64: FitsError [2018-01-24T17:04:11.924306Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.924319Z] [2018-01-24T17:04:11.924412Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.924511Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.924583Z] that was used when compiling the application program: [2018-01-24T17:04:11.924652Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.924720Z] Version included by the application program = 5 [2018-01-24T17:04:11.924733Z] [2018-01-24T17:04:11.924833Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.924872Z] with the CFITSIO library. [2018-01-24T17:04:11.924985Z] ______________________ SavingSubImagesTest.testRoundTrip _______________________ [2018-01-24T17:04:11.925079Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.925118Z] [2018-01-24T17:04:11.925205Z] self = [2018-01-24T17:04:11.925218Z] [2018-01-24T17:04:11.925253Z] def setUp(self): [2018-01-24T17:04:11.925317Z] path = lsst.utils.getPackageDir("afw") [2018-01-24T17:04:11.925416Z] self.parentFile = os.path.join(path, "tests", "data", "parent.fits") [2018-01-24T17:04:11.925434Z] [2018-01-24T17:04:11.925509Z] > self.parent = afwImage.ExposureF(self.parentFile) [2018-01-24T17:04:11.925544Z] E FitsError: [2018-01-24T17:04:11.925689Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.925866Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.925911Z] E cfitsio error stack: [2018-01-24T17:04:11.925937Z] E {0} [2018-01-24T17:04:11.926170Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.926221Z] E cfitsio error stack: [2018-01-24T17:04:11.926245Z] E ' [2018-01-24T17:04:11.926258Z] [2018-01-24T17:04:11.926329Z] tests/test_1079.py:64: FitsError [2018-01-24T17:04:11.926468Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.926488Z] [2018-01-24T17:04:11.926600Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.926703Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.926776Z] that was used when compiling the application program: [2018-01-24T17:04:11.926844Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.926913Z] Version included by the application program = 5 [2018-01-24T17:04:11.926925Z] [2018-01-24T17:04:11.927015Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.927056Z] with the CFITSIO library. [2018-01-24T17:04:11.927157Z] ________________ SavingSubImagesTest.testInvarianceOfPixelToSky ________________ [2018-01-24T17:04:11.927251Z] [gw3] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.927263Z] [2018-01-24T17:04:11.927360Z] self = [2018-01-24T17:04:11.927373Z] [2018-01-24T17:04:11.927407Z] def setUp(self): [2018-01-24T17:04:11.927471Z] path = lsst.utils.getPackageDir("afw") [2018-01-24T17:04:11.927568Z] self.parentFile = os.path.join(path, "tests", "data", "parent.fits") [2018-01-24T17:04:11.927587Z] [2018-01-24T17:04:11.927663Z] > self.parent = afwImage.ExposureF(self.parentFile) [2018-01-24T17:04:11.927697Z] E FitsError: [2018-01-24T17:04:11.927841Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.928017Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.928074Z] E cfitsio error stack: [2018-01-24T17:04:11.928113Z] E {0} [2018-01-24T17:04:11.928316Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.928362Z] E cfitsio error stack: [2018-01-24T17:04:11.928384Z] E ' [2018-01-24T17:04:11.928397Z] [2018-01-24T17:04:11.928458Z] tests/test_1079.py:64: FitsError [2018-01-24T17:04:11.928571Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.928585Z] [2018-01-24T17:04:11.928677Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.928775Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.928846Z] that was used when compiling the application program: [2018-01-24T17:04:11.928914Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.928982Z] Version included by the application program = 5 [2018-01-24T17:04:11.928995Z] [2018-01-24T17:04:11.929095Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.929148Z] with the CFITSIO library. [2018-01-24T17:04:11.929249Z] _________ ApCorrMapTestCase.testExposureCatalogBackwardsCompatibility __________ [2018-01-24T17:04:11.929344Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.929357Z] [2018-01-24T17:04:11.929485Z] self = [2018-01-24T17:04:11.929498Z] [2018-01-24T17:04:11.929571Z] def testExposureCatalogBackwardsCompatibility(self): [2018-01-24T17:04:11.929701Z] """Test that we can read an ExposureCatalog written with an old version of the code.""" [2018-01-24T17:04:11.929784Z] testPath = os.path.abspath(os.path.dirname(__file__)) [2018-01-24T17:04:11.929892Z] filename = os.path.join(testPath, "data", "version-0-ExposureCatalog.fits") [2018-01-24T17:04:11.929978Z] > cat = lsst.afw.table.ExposureCatalog.readFits(filename) [2018-01-24T17:04:11.930025Z] E FitsError: [2018-01-24T17:04:11.930187Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.930438Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/version-0-ExposureCatalog.fits' with mode 'r' [2018-01-24T17:04:11.930509Z] E cfitsio error stack: [2018-01-24T17:04:11.930539Z] E {0} [2018-01-24T17:04:11.930772Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/version-0-ExposureCatalog.fits' with mode 'r' [2018-01-24T17:04:11.930819Z] E cfitsio error stack: [2018-01-24T17:04:11.930842Z] E ' [2018-01-24T17:04:11.930855Z] [2018-01-24T17:04:11.930910Z] tests/test_apCorrMap.py:136: FitsError [2018-01-24T17:04:11.931014Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.931026Z] [2018-01-24T17:04:11.931120Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.931220Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.931293Z] that was used when compiling the application program: [2018-01-24T17:04:11.931373Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.931441Z] Version included by the application program = 5 [2018-01-24T17:04:11.931453Z] [2018-01-24T17:04:11.931539Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.931579Z] with the CFITSIO library. [2018-01-24T17:04:11.931679Z] __________________ SavingSubImagesTest.testInvarianceOfCrpix2 __________________ [2018-01-24T17:04:11.931774Z] [gw11] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.931787Z] [2018-01-24T17:04:11.931877Z] self = [2018-01-24T17:04:11.931902Z] [2018-01-24T17:04:11.931937Z] def setUp(self): [2018-01-24T17:04:11.932002Z] path = lsst.utils.getPackageDir("afw") [2018-01-24T17:04:11.932100Z] self.parentFile = os.path.join(path, "tests", "data", "parent.fits") [2018-01-24T17:04:11.932118Z] [2018-01-24T17:04:11.932194Z] > self.parent = afwImage.ExposureF(self.parentFile) [2018-01-24T17:04:11.932229Z] E FitsError: [2018-01-24T17:04:11.932384Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.932560Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.932632Z] E cfitsio error stack: [2018-01-24T17:04:11.932661Z] E {0} [2018-01-24T17:04:11.932877Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.932923Z] E cfitsio error stack: [2018-01-24T17:04:11.932946Z] E ' [2018-01-24T17:04:11.932960Z] [2018-01-24T17:04:11.933009Z] tests/test_1079.py:64: FitsError [2018-01-24T17:04:11.933112Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.933125Z] [2018-01-24T17:04:11.933238Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.933336Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.933407Z] that was used when compiling the application program: [2018-01-24T17:04:11.933475Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.933542Z] Version included by the application program = 5 [2018-01-24T17:04:11.933555Z] [2018-01-24T17:04:11.933642Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.933681Z] with the CFITSIO library. [2018-01-24T17:04:11.933840Z] ______________________ BackgroundTestCase.testCFHT_oldAPI ______________________ [2018-01-24T17:04:11.933968Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.933987Z] [2018-01-24T17:04:11.934097Z] self = [2018-01-24T17:04:11.934113Z] [2018-01-24T17:04:11.934207Z] @unittest.skipIf(AfwdataDir is None, "afwdata not setup") [2018-01-24T17:04:11.934264Z] def testCFHT_oldAPI(self): [2018-01-24T17:04:11.934349Z] """Test background subtraction on some real CFHT data""" [2018-01-24T17:04:11.934416Z] mi = afwImage.MaskedImageF(os.path.join( [2018-01-24T17:04:11.934515Z] > AfwdataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits")) [2018-01-24T17:04:11.934548Z] E FitsError: [2018-01-24T17:04:11.934688Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.934912Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:11.934958Z] E cfitsio error stack: [2018-01-24T17:04:11.934984Z] E {0} [2018-01-24T17:04:11.935232Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:11.935277Z] E cfitsio error stack: [2018-01-24T17:04:11.935299Z] E ' [2018-01-24T17:04:11.935312Z] [2018-01-24T17:04:11.935367Z] tests/test_background.py:296: FitsError [2018-01-24T17:04:11.935465Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.935478Z] [2018-01-24T17:04:11.935567Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.935679Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.935751Z] that was used when compiling the application program: [2018-01-24T17:04:11.935819Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.935887Z] Version included by the application program = 5 [2018-01-24T17:04:11.935900Z] [2018-01-24T17:04:11.935987Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.936028Z] with the CFITSIO library. [2018-01-24T17:04:11.936130Z] _________________ BackgroundTestCase.testBackgroundTestImages __________________ [2018-01-24T17:04:11.936223Z] [gw4] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.936236Z] [2018-01-24T17:04:11.936336Z] self = [2018-01-24T17:04:11.936349Z] [2018-01-24T17:04:11.936429Z] @unittest.skipIf(AfwdataDir is None, "afwdata not setup") [2018-01-24T17:04:11.936485Z] def testBackgroundTestImages(self): [2018-01-24T17:04:11.936587Z] """Tests Laher's afwdata/Statistics/*.fits images (doubles)""" [2018-01-24T17:04:11.936639Z] imginfolist = [] [2018-01-24T17:04:11.936685Z] # cooked to known value [2018-01-24T17:04:11.936780Z] imginfolist.append(["v1_i1_g_m400_s20_f.fits", 399.9912966583894]) [2018-01-24T17:04:11.936797Z] [2018-01-24T17:04:11.936849Z] for imginfo in imginfolist: [2018-01-24T17:04:11.936909Z] imgfile, centerValue = imginfo [2018-01-24T17:04:11.937009Z] imgPath = os.path.join(AfwdataDir, "Statistics", imgfile) [2018-01-24T17:04:11.937026Z] [2018-01-24T17:04:11.937079Z] # get the image and header [2018-01-24T17:04:11.937147Z] > dimg = afwImage.DecoratedImageF(imgPath) [2018-01-24T17:04:11.937185Z] E FitsError: [2018-01-24T17:04:11.937329Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.937586Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/Statistics/v1_i1_g_m400_s20_f.fits' with mode 'r' [2018-01-24T17:04:11.937651Z] E cfitsio error stack: [2018-01-24T17:04:11.937685Z] E {0} [2018-01-24T17:04:11.937977Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/Statistics/v1_i1_g_m400_s20_f.fits' with mode 'r' [2018-01-24T17:04:11.938036Z] E cfitsio error stack: [2018-01-24T17:04:11.938065Z] E ' [2018-01-24T17:04:11.938079Z] [2018-01-24T17:04:11.938136Z] tests/test_background.py:119: FitsError [2018-01-24T17:04:11.938240Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.938253Z] [2018-01-24T17:04:11.938347Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.938447Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.938520Z] that was used when compiling the application program: [2018-01-24T17:04:11.938589Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.938659Z] Version included by the application program = 5 [2018-01-24T17:04:11.938672Z] [2018-01-24T17:04:11.938761Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.938803Z] with the CFITSIO library. [2018-01-24T17:04:11.938906Z] __________________________ BackgroundTestCase.testXY0 __________________________ [2018-01-24T17:04:11.939001Z] [gw4] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.939014Z] [2018-01-24T17:04:11.939097Z] self = [2018-01-24T17:04:11.939111Z] [2018-01-24T17:04:11.939192Z] @unittest.skipIf(AfwdataDir is None, "afwdata not setup") [2018-01-24T17:04:11.939230Z] def testXY0(self): [2018-01-24T17:04:11.939319Z] """Test fitting the background to an image with nonzero xy0 [2018-01-24T17:04:11.939336Z] [2018-01-24T17:04:11.939429Z] The statsImage and background image should not vary with xy0 [2018-01-24T17:04:11.939459Z] """ [2018-01-24T17:04:11.939547Z] bgImageList = [] # list of background images, one per xy0 [2018-01-24T17:04:11.939632Z] statsImageList = [] # list of stats images, one per xy0 [2018-01-24T17:04:11.939692Z] for xy0 in (afwGeom.Point2I(0, 0), [2018-01-24T17:04:11.939759Z] afwGeom.Point2I(-100, -999), [2018-01-24T17:04:11.939826Z] afwGeom.Point2I(1000, 500)): [2018-01-24T17:04:11.939879Z] > mi = self.getCfhtImage() [2018-01-24T17:04:11.939918Z] [2018-01-24T17:04:11.939968Z] tests/test_background.py:337: [2018-01-24T17:04:11.940072Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:11.940085Z] [2018-01-24T17:04:11.940168Z] self = [2018-01-24T17:04:11.940182Z] [2018-01-24T17:04:11.940225Z] def getCfhtImage(self): [2018-01-24T17:04:11.940318Z] """Get a portion of a CFHT image as a MaskedImageF""" [2018-01-24T17:04:11.940407Z] bbox = afwGeom.Box2I(afwGeom.Point2I(500, 2000), [2018-01-24T17:04:11.940485Z] afwGeom.Point2I(2079, 4609)) [2018-01-24T17:04:11.940536Z] imagePath = os.path.join( [2018-01-24T17:04:11.940624Z] AfwdataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:11.940725Z] > return afwImage.MaskedImageF(imagePath, PropertySet(), bbox) [2018-01-24T17:04:11.940759Z] E FitsError: [2018-01-24T17:04:11.940901Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.941112Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:11.941159Z] E cfitsio error stack: [2018-01-24T17:04:11.941229Z] E {0} [2018-01-24T17:04:11.941490Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:11.941553Z] E cfitsio error stack: [2018-01-24T17:04:11.941587Z] E ' [2018-01-24T17:04:11.941601Z] [2018-01-24T17:04:11.941658Z] tests/test_background.py:324: FitsError [2018-01-24T17:04:11.941778Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.941796Z] [2018-01-24T17:04:11.941956Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.942072Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.942164Z] that was used when compiling the application program: [2018-01-24T17:04:11.942296Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.942385Z] Version included by the application program = 5 [2018-01-24T17:04:11.942412Z] [2018-01-24T17:04:11.942507Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.942549Z] with the CFITSIO library. [2018-01-24T17:04:11.942652Z] ______________________ ApCorrMapTestCase.testPersistence _______________________ [2018-01-24T17:04:11.942748Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.942761Z] [2018-01-24T17:04:11.942851Z] self = [2018-01-24T17:04:11.942864Z] [2018-01-24T17:04:11.942910Z] def testPersistence(self): [2018-01-24T17:04:11.943013Z] """Test that we can round-trip an ApCorrMap through FITS persistence.""" [2018-01-24T17:04:11.943101Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:11.943159Z] self.map.writeFits(filename) [2018-01-24T17:04:11.943241Z] > map2 = lsst.afw.image.ApCorrMap.readFits(filename) [2018-01-24T17:04:11.943279Z] E FitsError: [2018-01-24T17:04:11.943429Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.943659Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_apCorrMap_testPersistence-hEhejb.fits' with mode 'r' [2018-01-24T17:04:11.943708Z] E cfitsio error stack: [2018-01-24T17:04:11.943739Z] E {0} [2018-01-24T17:04:11.943983Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_apCorrMap_testPersistence-hEhejb.fits' with mode 'r' [2018-01-24T17:04:11.944039Z] E cfitsio error stack: [2018-01-24T17:04:11.944081Z] E ' [2018-01-24T17:04:11.944093Z] [2018-01-24T17:04:11.944149Z] tests/test_apCorrMap.py:106: FitsError [2018-01-24T17:04:11.944251Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.944264Z] [2018-01-24T17:04:11.944357Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.944468Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.944539Z] that was used when compiling the application program: [2018-01-24T17:04:11.944619Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.944689Z] Version included by the application program = 5 [2018-01-24T17:04:11.944702Z] [2018-01-24T17:04:11.944792Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.944833Z] with the CFITSIO library. [2018-01-24T17:04:11.944935Z] _______________ ApCorrMapTestCase.testExposureRecordPersistence ________________ [2018-01-24T17:04:11.945030Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.945043Z] [2018-01-24T17:04:11.945147Z] self = [2018-01-24T17:04:11.945160Z] [2018-01-24T17:04:11.945222Z] def testExposureRecordPersistence(self): [2018-01-24T17:04:11.945316Z] """Test that the ApCorrMap is saved with an ExposureRecord""" [2018-01-24T17:04:11.945407Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:11.945477Z] cat1 = lsst.afw.table.ExposureCatalog( [2018-01-24T17:04:11.945564Z] lsst.afw.table.ExposureTable.makeMinimalSchema()) [2018-01-24T17:04:11.945618Z] record1 = cat1.addNew() [2018-01-24T17:04:11.945680Z] record1.setApCorrMap(self.map) [2018-01-24T17:04:11.945735Z] cat1.writeFits(filename) [2018-01-24T17:04:11.945826Z] > cat2 = lsst.afw.table.ExposureCatalog.readFits(filename) [2018-01-24T17:04:11.945866Z] E FitsError: [2018-01-24T17:04:11.946035Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.946356Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_apCorrMap_testExposureRecordPersistence-zcvaVT.fits' with mode 'r' [2018-01-24T17:04:11.946415Z] E cfitsio error stack: [2018-01-24T17:04:11.946448Z] E {0} [2018-01-24T17:04:11.946807Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_apCorrMap_testExposureRecordPersistence-zcvaVT.fits' with mode 'r' [2018-01-24T17:04:11.946865Z] E cfitsio error stack: [2018-01-24T17:04:11.946894Z] E ' [2018-01-24T17:04:11.946906Z] [2018-01-24T17:04:11.946963Z] tests/test_apCorrMap.py:127: FitsError [2018-01-24T17:04:11.947069Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.947082Z] [2018-01-24T17:04:11.947190Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.947346Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.947432Z] that was used when compiling the application program: [2018-01-24T17:04:11.947517Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.947601Z] Version included by the application program = 5 [2018-01-24T17:04:11.947616Z] [2018-01-24T17:04:11.947707Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.947749Z] with the CFITSIO library. [2018-01-24T17:04:11.947852Z] ____________________ FitsUtilsTestCase.testDetectorBuilder _____________________ [2018-01-24T17:04:11.947975Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.947992Z] [2018-01-24T17:04:11.948094Z] self = [2018-01-24T17:04:11.948107Z] [2018-01-24T17:04:11.948158Z] def testDetectorBuilder(self): [2018-01-24T17:04:11.948217Z] """Test the buildDetector method [2018-01-24T17:04:11.948350Z] Just tests whether the constructors return without error. The internals are tested above. [2018-01-24T17:04:11.948381Z] """ [2018-01-24T17:04:11.948468Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:11.948532Z] self.exposure.writeFits(tmpFile) [2018-01-24T17:04:11.948627Z] # test that it raises without setting non-defaulted keywords [2018-01-24T17:04:11.948704Z] self.assertRaises(Exception, DetectorBuilder( [2018-01-24T17:04:11.948768Z] > tmpFile, [tmpFile, tmpFile])) [2018-01-24T17:04:11.948780Z] [2018-01-24T17:04:11.948834Z] tests/test_camGeomFitsUtils.py:122: [2018-01-24T17:04:11.948937Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:11.948950Z] [2018-01-24T17:04:11.949049Z] self = [2018-01-24T17:04:11.949195Z] detectorFileName = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_camGeomFitsUtils_testDetectorBuilder-pF6Q_F.fits' [2018-01-24T17:04:11.949458Z] ampFileNameList = ['/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_camGeomFitsUtils_testDetectorBuilder-pF6Q_F.fits', '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_camGeomFitsUtils_testDetectorBuilder-pF6Q_F.fits'] [2018-01-24T17:04:11.949544Z] inAmpCoords = True, plateScale = 1.0, radialCoeffs = (0.0, 1.0) [2018-01-24T17:04:11.949601Z] clobberMetadata = False, doRaise = True [2018-01-24T17:04:11.949614Z] [2018-01-24T17:04:11.949729Z] def __init__(self, detectorFileName, ampFileNameList, inAmpCoords=True, plateScale=1., [2018-01-24T17:04:11.949829Z] radialCoeffs=(0., 1.), clobberMetadata=False, doRaise=True): [2018-01-24T17:04:11.949941Z] ''' @param[in] detectorFileName FITS file containing the detector description. [2018-01-24T17:04:11.950067Z] May use [] notation to specify an extension in an MEF. [2018-01-24T17:04:11.950191Z] @param[in] ampFileNameList List of FITS file names to use in building the amps. [2018-01-24T17:04:11.950323Z] May contain duplicate entries if the raw data are assembled. [2018-01-24T17:04:11.950464Z] @param[in] inAmpCoords Boolean, True if raw data are in amp coordinates, False if raw data [2018-01-24T17:04:11.950582Z] are assembled into pseudo detector pixel arrays [2018-01-24T17:04:11.950683Z] @param[in] plateScale Nominal platescale (arcsec/mm) [2018-01-24T17:04:11.950874Z] @param[in] radialCoeffs Radial distortion coefficients for a radial polynomial in normalized [2018-01-24T17:04:11.950961Z] units. [2018-01-24T17:04:11.951081Z] @param[in] clobberMetadata Clobber metadata from input files if [2018-01-24T17:04:11.951227Z] overridden in the _sanitizeMetadata method [2018-01-24T17:04:11.951368Z] @param[in] doRaise Raise exception if not all non-defaulted [2018-01-24T17:04:11.951487Z] keywords are defined? Default is True. [2018-01-24T17:04:11.951518Z] ''' [2018-01-24T17:04:11.951573Z] self.inAmpCoords = inAmpCoords [2018-01-24T17:04:11.951646Z] self.defaultAmpMap = self._makeDefaultAmpMap() [2018-01-24T17:04:11.951731Z] self.defaultDetectorMap = self._makeDefaultDetectorMap() [2018-01-24T17:04:11.951823Z] > self.detectorMetadata = afwImage.readMetadata(detectorFileName) [2018-01-24T17:04:11.951857Z] E FitsError: [2018-01-24T17:04:11.952001Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.952227Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_camGeomFitsUtils_testDetectorBuilder-pF6Q_F.fits' with mode 'r' [2018-01-24T17:04:11.952273Z] E cfitsio error stack: [2018-01-24T17:04:11.952301Z] E {0} [2018-01-24T17:04:11.952555Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_camGeomFitsUtils_testDetectorBuilder-pF6Q_F.fits' with mode 'r' [2018-01-24T17:04:11.952600Z] E cfitsio error stack: [2018-01-24T17:04:11.952623Z] E ' [2018-01-24T17:04:11.952636Z] [2018-01-24T17:04:11.952720Z] python/lsst/afw/cameraGeom/fitsUtils.py:120: FitsError [2018-01-24T17:04:11.952834Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.952846Z] [2018-01-24T17:04:11.952939Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.953038Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.953109Z] that was used when compiling the application program: [2018-01-24T17:04:11.953189Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.953256Z] Version included by the application program = 5 [2018-01-24T17:04:11.953268Z] [2018-01-24T17:04:11.953354Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.953394Z] with the CFITSIO library. [2018-01-24T17:04:11.953506Z] _______________________ AmpInfoTableTestCase.testBasics ________________________ [2018-01-24T17:04:11.953601Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.953614Z] [2018-01-24T17:04:11.953703Z] self = [2018-01-24T17:04:11.953716Z] [2018-01-24T17:04:11.953756Z] def testBasics(self): [2018-01-24T17:04:11.953794Z] """Test basics [2018-01-24T17:04:11.953823Z] """ [2018-01-24T17:04:11.953865Z] nameRawInfoList = ( [2018-01-24T17:04:11.953908Z] ("Amp1", True), [2018-01-24T17:04:11.953952Z] ("Amp2", False), [2018-01-24T17:04:11.953974Z] ) [2018-01-24T17:04:11.953991Z] [2018-01-24T17:04:11.954057Z] for name, hasRawInfo in nameRawInfoList: [2018-01-24T17:04:11.954098Z] gain = 1.2345 [2018-01-24T17:04:11.954144Z] saturation = 65535 [2018-01-24T17:04:11.954190Z] readNoise = -0.523 [2018-01-24T17:04:11.954258Z] linearityCoeffs = (1.1, 2.2, 3.3, 4.4) [2018-01-24T17:04:11.954315Z] linearityType = "Polynomial" [2018-01-24T17:04:11.954390Z] bbox = afwGeom.Box2I(afwGeom.Point2I(3, -2), [2018-01-24T17:04:11.954484Z] afwGeom.Extent2I(231, 320)) [2018-01-24T17:04:11.954549Z] hasRawInfo = hasRawInfo [2018-01-24T17:04:11.954595Z] rawFlipX = True [2018-01-24T17:04:11.954641Z] rawFlipY = False [2018-01-24T17:04:11.954699Z] readoutCorner = afwTable.UL [2018-01-24T17:04:11.954796Z] rawBBox = afwGeom.Box2I(afwGeom.Point2I(-25, 2), [2018-01-24T17:04:11.954897Z] afwGeom.Extent2I(550, 629)) [2018-01-24T17:04:11.954973Z] rawXYOffset = afwGeom.Extent2I(-97, 253) [2018-01-24T17:04:11.955083Z] rawDataBBox = afwGeom.Box2I(afwGeom.Point2I(-2, 29), [2018-01-24T17:04:11.955186Z] afwGeom.Extent2I(123, 307)) [2018-01-24T17:04:11.955291Z] rawHorizontalOverscanBBox = afwGeom.Box2I( [2018-01-24T17:04:11.955392Z] afwGeom.Point2I(150, 29), afwGeom.Extent2I(25, 307)) [2018-01-24T17:04:11.955508Z] rawVerticalOverscanBBox = afwGeom.Box2I( [2018-01-24T17:04:11.955603Z] afwGeom.Point2I(-2, 201), afwGeom.Extent2I(123, 6)) [2018-01-24T17:04:11.955679Z] rawPrescanBBox = afwGeom.Box2I( [2018-01-24T17:04:11.955807Z] afwGeom.Point2I(-20, 2), afwGeom.Extent2I(5, 307)) [2018-01-24T17:04:11.955835Z] [2018-01-24T17:04:11.955918Z] record = self.catalog.addNew() [2018-01-24T17:04:11.955980Z] record.setBBox(bbox) [2018-01-24T17:04:11.956037Z] record.setName(name) [2018-01-24T17:04:11.956096Z] record.setGain(gain) [2018-01-24T17:04:11.956186Z] record.setSaturation(saturation) [2018-01-24T17:04:11.956259Z] record.setReadNoise(readNoise) [2018-01-24T17:04:11.956333Z] record.setReadoutCorner(readoutCorner) [2018-01-24T17:04:11.956406Z] record.setLinearityCoeffs(linearityCoeffs) [2018-01-24T17:04:11.956475Z] record.setLinearityType(linearityType) [2018-01-24T17:04:11.956537Z] record.setHasRawInfo(hasRawInfo) [2018-01-24T17:04:11.956578Z] if hasRawInfo: [2018-01-24T17:04:11.956639Z] record.setRawFlipX(rawFlipX) [2018-01-24T17:04:11.956702Z] record.setRawFlipY(rawFlipY) [2018-01-24T17:04:11.956762Z] record.setRawBBox(rawBBox) [2018-01-24T17:04:11.956831Z] record.setRawXYOffset(rawXYOffset) [2018-01-24T17:04:11.956899Z] record.setRawDataBBox(rawDataBBox) [2018-01-24T17:04:11.956999Z] record.setRawHorizontalOverscanBBox(rawHorizontalOverscanBBox) [2018-01-24T17:04:11.957094Z] record.setRawVerticalOverscanBBox(rawVerticalOverscanBBox) [2018-01-24T17:04:11.957170Z] record.setRawPrescanBBox(rawPrescanBBox) [2018-01-24T17:04:11.957187Z] [2018-01-24T17:04:11.957257Z] self.assertEqual(name, record.getName()) [2018-01-24T17:04:11.957329Z] self.assertEqual(gain, record.getGain()) [2018-01-24T17:04:11.957414Z] self.assertEqual(saturation, record.getSaturation()) [2018-01-24T17:04:11.957496Z] self.assertEqual(readNoise, record.getReadNoise()) [2018-01-24T17:04:11.957586Z] self.assertEqual(readoutCorner, record.getReadoutCorner()) [2018-01-24T17:04:11.957656Z] self.assertEqual(list(linearityCoeffs), [2018-01-24T17:04:11.957732Z] record.getLinearityCoeffs()) [2018-01-24T17:04:11.957823Z] self.assertEqual(linearityType, record.getLinearityType()) [2018-01-24T17:04:11.957894Z] self.assertEqual(bbox, record.getBBox()) [2018-01-24T17:04:11.957989Z] self.assertEqual(hasRawInfo, record.getHasRawInfo()) [2018-01-24T17:04:11.958030Z] if hasRawInfo: [2018-01-24T17:04:11.958110Z] self.assertEqual(rawBBox, record.getRawBBox()) [2018-01-24T17:04:11.958199Z] self.assertEqual(rawDataBBox, record.getRawDataBBox()) [2018-01-24T17:04:11.958276Z] self.assertEqual(rawHorizontalOverscanBBox, [2018-01-24T17:04:11.958365Z] record.getRawHorizontalOverscanBBox()) [2018-01-24T17:04:11.958439Z] self.assertEqual(rawVerticalOverscanBBox, [2018-01-24T17:04:11.958540Z] record.getRawVerticalOverscanBBox()) [2018-01-24T17:04:11.958638Z] self.assertEqual(rawPrescanBBox, record.getRawPrescanBBox()) [2018-01-24T17:04:11.958722Z] self.assertEqual(rawFlipX, record.getRawFlipX()) [2018-01-24T17:04:11.958807Z] self.assertEqual(rawFlipY, record.getRawFlipY()) [2018-01-24T17:04:11.958909Z] self.assertEqual(rawXYOffset, record.getRawXYOffset()) [2018-01-24T17:04:11.958926Z] [2018-01-24T17:04:11.958988Z] self.assertEqual(len(self.catalog), 2) [2018-01-24T17:04:11.959076Z] for i, data in enumerate(zip(nameRawInfoList, self.catalog)): [2018-01-24T17:04:11.959129Z] name, hasRawInfo = data[0] [2018-01-24T17:04:11.959172Z] record = data[1] [2018-01-24T17:04:11.959251Z] self.assertEqual(name, self.catalog[i].getName()) [2018-01-24T17:04:11.959321Z] self.assertEqual(name, record.getName()) [2018-01-24T17:04:11.959429Z] self.assertEqual(hasRawInfo, self.catalog[i].getHasRawInfo()) [2018-01-24T17:04:11.959541Z] self.assertEqual(hasRawInfo, record.getHasRawInfo()) [2018-01-24T17:04:11.959561Z] [2018-01-24T17:04:11.959679Z] with lsst.utils.tests.getTempFilePath(".fits") as fileName: [2018-01-24T17:04:11.959753Z] self.catalog.writeFits(fileName) [2018-01-24T17:04:11.959839Z] > catCopy = afwTable.AmpInfoCatalog.readFits(fileName) [2018-01-24T17:04:11.959880Z] E FitsError: [2018-01-24T17:04:11.960029Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.960248Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_ampInfoTable_testBasics-aPpWzl.fits' with mode 'r' [2018-01-24T17:04:11.960298Z] E cfitsio error stack: [2018-01-24T17:04:11.960329Z] E {0} [2018-01-24T17:04:11.960575Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_ampInfoTable_testBasics-aPpWzl.fits' with mode 'r' [2018-01-24T17:04:11.960624Z] E cfitsio error stack: [2018-01-24T17:04:11.960652Z] E ' [2018-01-24T17:04:11.960664Z] [2018-01-24T17:04:11.960723Z] tests/test_ampInfoTable.py:152: FitsError [2018-01-24T17:04:11.960824Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.960837Z] [2018-01-24T17:04:11.960930Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.961030Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.961102Z] that was used when compiling the application program: [2018-01-24T17:04:11.961171Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.961240Z] Version included by the application program = 5 [2018-01-24T17:04:11.961253Z] [2018-01-24T17:04:11.961341Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.961381Z] with the CFITSIO library. [2018-01-24T17:04:11.961483Z] _________________________ BackgroundTestCase.testCFHT __________________________ [2018-01-24T17:04:11.961578Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.961590Z] [2018-01-24T17:04:11.961673Z] self = [2018-01-24T17:04:11.961686Z] [2018-01-24T17:04:11.961766Z] @unittest.skipIf(AfwdataDir is None, "afwdata not setup") [2018-01-24T17:04:11.961804Z] def testCFHT(self): [2018-01-24T17:04:11.961888Z] """Test background subtraction on some real CFHT data""" [2018-01-24T17:04:11.961943Z] > mi = self.getCfhtImage() [2018-01-24T17:04:11.961957Z] [2018-01-24T17:04:11.962011Z] tests/test_background.py:386: [2018-01-24T17:04:11.962117Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:11.962130Z] [2018-01-24T17:04:11.962213Z] self = [2018-01-24T17:04:11.962226Z] [2018-01-24T17:04:11.962268Z] def getCfhtImage(self): [2018-01-24T17:04:11.962349Z] """Get a portion of a CFHT image as a MaskedImageF""" [2018-01-24T17:04:11.962424Z] bbox = afwGeom.Box2I(afwGeom.Point2I(500, 2000), [2018-01-24T17:04:11.962500Z] afwGeom.Point2I(2079, 4609)) [2018-01-24T17:04:11.962549Z] imagePath = os.path.join( [2018-01-24T17:04:11.962636Z] AfwdataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:11.962724Z] > return afwImage.MaskedImageF(imagePath, PropertySet(), bbox) [2018-01-24T17:04:11.962788Z] E FitsError: [2018-01-24T17:04:11.962980Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.963259Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:11.963319Z] E cfitsio error stack: [2018-01-24T17:04:11.963352Z] E {0} [2018-01-24T17:04:11.963599Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:11.963646Z] E cfitsio error stack: [2018-01-24T17:04:11.963669Z] E ' [2018-01-24T17:04:11.963682Z] [2018-01-24T17:04:11.963740Z] tests/test_background.py:324: FitsError [2018-01-24T17:04:11.963844Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.963857Z] [2018-01-24T17:04:11.963969Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.964084Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.964169Z] that was used when compiling the application program: [2018-01-24T17:04:11.964240Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.964310Z] Version included by the application program = 5 [2018-01-24T17:04:11.964323Z] [2018-01-24T17:04:11.964412Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.964453Z] with the CFITSIO library. [2018-01-24T17:04:11.964557Z] ___________________ BackgroundTestCase.testBackgroundListIO ____________________ [2018-01-24T17:04:11.964652Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.964665Z] [2018-01-24T17:04:11.964762Z] self = [2018-01-24T17:04:11.964775Z] [2018-01-24T17:04:11.964827Z] def testBackgroundListIO(self): [2018-01-24T17:04:11.964894Z] """Test I/O for BackgroundLists""" [2018-01-24T17:04:11.964965Z] bgCtrl = afwMath.BackgroundControl(10, 10) [2018-01-24T17:04:11.965039Z] interpStyle = afwMath.Interpolate.AKIMA_SPLINE [2018-01-24T17:04:11.965114Z] undersampleStyle = afwMath.REDUCE_INTERP_ORDER [2018-01-24T17:04:11.965154Z] approxOrderX = 6 [2018-01-24T17:04:11.965194Z] approxOrderY = 6 [2018-01-24T17:04:11.965240Z] approxWeighting = True [2018-01-24T17:04:11.965258Z] [2018-01-24T17:04:11.965306Z] im = self.image.Factory( [2018-01-24T17:04:11.965387Z] self.image, self.image.getBBox(afwImage.PARENT)) [2018-01-24T17:04:11.965432Z] arr = im.getArray() [2018-01-24T17:04:11.965522Z] arr += np.random.normal(size=(im.getHeight(), im.getWidth())) [2018-01-24T17:04:11.965539Z] [2018-01-24T17:04:11.965659Z] for astyle in afwMath.ApproximateControl.UNKNOWN, afwMath.ApproximateControl.CHEBYSHEV: [2018-01-24T17:04:11.965749Z] actrl = afwMath.ApproximateControl(astyle, approxOrderX) [2018-01-24T17:04:11.965815Z] bgCtrl.setApproximateControl(actrl) [2018-01-24T17:04:11.965832Z] [2018-01-24T17:04:11.965905Z] backgroundList = afwMath.BackgroundList() [2018-01-24T17:04:11.965985Z] backImage = afwImage.ImageF(im.getDimensions()) [2018-01-24T17:04:11.966031Z] for i in range(2): [2018-01-24T17:04:11.966109Z] bkgd = afwMath.makeBackground(im, bgCtrl) [2018-01-24T17:04:11.966152Z] if i == 0: [2018-01-24T17:04:11.966217Z] # no need to call getImage [2018-01-24T17:04:11.966344Z] backgroundList.append((bkgd, interpStyle, undersampleStyle, [2018-01-24T17:04:11.966495Z] astyle, approxOrderX, approxOrderY, approxWeighting)) [2018-01-24T17:04:11.966547Z] else: [2018-01-24T17:04:11.966657Z] # Relies on having called getImage; deprecated [2018-01-24T17:04:11.966739Z] backgroundList.append(bkgd) [2018-01-24T17:04:11.966764Z] [2018-01-24T17:04:11.966882Z] backImage += bkgd.getImageF(interpStyle, undersampleStyle) [2018-01-24T17:04:11.966913Z] [2018-01-24T17:04:11.967007Z] with lsst.utils.tests.getTempFilePath(".fits") as fileName: [2018-01-24T17:04:11.967076Z] > backgroundList.writeFits(fileName) [2018-01-24T17:04:11.967089Z] [2018-01-24T17:04:11.967135Z] tests/test_background.py:826: [2018-01-24T17:04:11.967238Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:11.967251Z] [2018-01-24T17:04:11.967345Z] self = [2018-01-24T17:04:11.967475Z] fileName = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_background_testBackgroundListIO-NaQyRQ.fits' [2018-01-24T17:04:11.967498Z] flags = 0 [2018-01-24T17:04:11.967510Z] [2018-01-24T17:04:11.967571Z] def writeFits(self, fileName, flags=0): [2018-01-24T17:04:11.967639Z] """Save our list of Backgrounds to a file [2018-01-24T17:04:11.967712Z] @param fileName FITS file to write [2018-01-24T17:04:11.967839Z] @param flags Flags to control details of writing; currently unused, [2018-01-24T17:04:11.967962Z] but present for consistency with [2018-01-24T17:04:11.968063Z] afw.table.BaseCatalog.writeFits. [2018-01-24T17:04:11.968094Z] """ [2018-01-24T17:04:11.968112Z] [2018-01-24T17:04:11.968168Z] for i, bkgd in enumerate(self): [2018-01-24T17:04:11.968282Z] (bkgd, interpStyle, undersampleStyle, approxStyle, approxOrderX, approxOrderY, [2018-01-24T17:04:11.968335Z] approxWeighting) = bkgd [2018-01-24T17:04:11.968352Z] [2018-01-24T17:04:11.968415Z] statsImage = bkgd.getStatsImage() [2018-01-24T17:04:11.968433Z] [2018-01-24T17:04:11.968489Z] md = dafBase.PropertyList() [2018-01-24T17:04:11.968558Z] md.set("INTERPSTYLE", int(interpStyle)) [2018-01-24T17:04:11.968639Z] md.set("UNDERSAMPLESTYLE", int(undersampleStyle)) [2018-01-24T17:04:11.968709Z] md.set("APPROXSTYLE", int(approxStyle)) [2018-01-24T17:04:11.968775Z] md.set("APPROXORDERX", approxOrderX) [2018-01-24T17:04:11.968841Z] md.set("APPROXORDERY", approxOrderY) [2018-01-24T17:04:11.968914Z] md.set("APPROXWEIGHTING", approxWeighting) [2018-01-24T17:04:11.968969Z] bbox = bkgd.getImageBBox() [2018-01-24T17:04:11.969033Z] md.set("BKGD_X0", bbox.getMinX()) [2018-01-24T17:04:11.969096Z] md.set("BKGD_Y0", bbox.getMinY()) [2018-01-24T17:04:11.969163Z] md.set("BKGD_WIDTH", bbox.getWidth()) [2018-01-24T17:04:11.969232Z] md.set("BKGD_HEIGHT", bbox.getHeight()) [2018-01-24T17:04:11.969249Z] [2018-01-24T17:04:11.969352Z] statsImage.getImage().writeFits(fileName, md, "w" if i == 0 else "a") [2018-01-24T17:04:11.969433Z] > statsImage.getMask().writeFits(fileName, md, "a") [2018-01-24T17:04:11.969471Z] E FitsError: [2018-01-24T17:04:11.969620Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.969845Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_background_testBackgroundListIO-NaQyRQ.fits' with mode 'a' [2018-01-24T17:04:11.969904Z] E cfitsio error stack: [2018-01-24T17:04:11.969936Z] E {0} [2018-01-24T17:04:11.970215Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_background_testBackgroundListIO-NaQyRQ.fits' with mode 'a' [2018-01-24T17:04:11.970297Z] E cfitsio error stack: [2018-01-24T17:04:11.970330Z] E ' [2018-01-24T17:04:11.970344Z] [2018-01-24T17:04:11.970430Z] python/lsst/afw/math/backgroundList.py:123: FitsError [2018-01-24T17:04:11.970549Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.970565Z] [2018-01-24T17:04:11.970677Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.970794Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.970870Z] that was used when compiling the application program: [2018-01-24T17:04:11.970941Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.971012Z] Version included by the application program = 5 [2018-01-24T17:04:11.971025Z] [2018-01-24T17:04:11.971114Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.971156Z] with the CFITSIO library. [2018-01-24T17:04:11.971259Z] __________________ ApCorrMapTestCase.testExposurePersistence ___________________ [2018-01-24T17:04:11.971355Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.971368Z] [2018-01-24T17:04:11.971467Z] self = [2018-01-24T17:04:11.971481Z] [2018-01-24T17:04:11.971536Z] def testExposurePersistence(self): [2018-01-24T17:04:11.971620Z] """Test that the ApCorrMap is saved with an Exposure""" [2018-01-24T17:04:11.971709Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:11.971789Z] exposure1 = lsst.afw.image.ExposureF(self.bbox) [2018-01-24T17:04:11.971863Z] exposure1.getInfo().setApCorrMap(self.map) [2018-01-24T17:04:11.971922Z] exposure1.writeFits(filename) [2018-01-24T17:04:11.972000Z] > exposure2 = lsst.afw.image.ExposureF(filename) [2018-01-24T17:04:11.972040Z] E FitsError: [2018-01-24T17:04:11.972191Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.972423Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_apCorrMap_testExposurePersistence-j5GAAQ.fits' with mode 'r' [2018-01-24T17:04:11.972474Z] E cfitsio error stack: [2018-01-24T17:04:11.972504Z] E {0} [2018-01-24T17:04:11.972763Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_apCorrMap_testExposurePersistence-j5GAAQ.fits' with mode 'r' [2018-01-24T17:04:11.972814Z] E cfitsio error stack: [2018-01-24T17:04:11.972842Z] E ' [2018-01-24T17:04:11.972854Z] [2018-01-24T17:04:11.972910Z] tests/test_apCorrMap.py:115: FitsError [2018-01-24T17:04:11.973014Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.973026Z] [2018-01-24T17:04:11.973120Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.973220Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.973293Z] that was used when compiling the application program: [2018-01-24T17:04:11.973362Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.973431Z] Version included by the application program = 5 [2018-01-24T17:04:11.973444Z] [2018-01-24T17:04:11.973534Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.973574Z] with the CFITSIO library. [2018-01-24T17:04:11.973678Z] _____________________ CameraGeomTestCase.testTransformDet ______________________ [2018-01-24T17:04:11.973795Z] [gw5] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.973826Z] [2018-01-24T17:04:11.973932Z] self = [2018-01-24T17:04:11.973956Z] [2018-01-24T17:04:11.973995Z] def setUp(self): [2018-01-24T17:04:11.974088Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:11.974182Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:11.974272Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:11.974319Z] self.assemblyList = {} [2018-01-24T17:04:11.974427Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:11.974523Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:11.974571Z] > for i in range(8)] [2018-01-24T17:04:11.974606Z] E FitsError: [2018-01-24T17:04:11.974752Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.974931Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.974976Z] E cfitsio error stack: [2018-01-24T17:04:11.975003Z] E {0} [2018-01-24T17:04:11.975210Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.975257Z] E cfitsio error stack: [2018-01-24T17:04:11.975279Z] E ' [2018-01-24T17:04:11.975292Z] [2018-01-24T17:04:11.975346Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:11.975448Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.975461Z] [2018-01-24T17:04:11.975554Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.975653Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.975725Z] that was used when compiling the application program: [2018-01-24T17:04:11.975794Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.975862Z] Version included by the application program = 5 [2018-01-24T17:04:11.975875Z] [2018-01-24T17:04:11.975963Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.976015Z] with the CFITSIO library. [2018-01-24T17:04:11.976129Z] _____________________ CameraGeomTestCase.testCameraRaises ______________________ [2018-01-24T17:04:11.976223Z] [gw2] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.976236Z] [2018-01-24T17:04:11.976330Z] self = [2018-01-24T17:04:11.976343Z] [2018-01-24T17:04:11.976378Z] def setUp(self): [2018-01-24T17:04:11.976480Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:11.976567Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:11.976651Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:11.976696Z] self.assemblyList = {} [2018-01-24T17:04:11.976782Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:11.976872Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:11.976919Z] > for i in range(8)] [2018-01-24T17:04:11.976965Z] E FitsError: [2018-01-24T17:04:11.977111Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.977289Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.977347Z] E cfitsio error stack: [2018-01-24T17:04:11.977372Z] E {0} [2018-01-24T17:04:11.977645Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.977722Z] E cfitsio error stack: [2018-01-24T17:04:11.977749Z] E ' [2018-01-24T17:04:11.977762Z] [2018-01-24T17:04:11.977830Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:11.977974Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.977998Z] [2018-01-24T17:04:11.978095Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.978196Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.978269Z] that was used when compiling the application program: [2018-01-24T17:04:11.978340Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.978409Z] Version included by the application program = 5 [2018-01-24T17:04:11.978422Z] [2018-01-24T17:04:11.978511Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.978552Z] with the CFITSIO library. [2018-01-24T17:04:11.978656Z] ____________________ CameraGeomTestCase.testMakeCameraPoint ____________________ [2018-01-24T17:04:11.978751Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.978764Z] [2018-01-24T17:04:11.978860Z] self = [2018-01-24T17:04:11.978874Z] [2018-01-24T17:04:11.978909Z] def setUp(self): [2018-01-24T17:04:11.979001Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:11.979092Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:11.979179Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:11.979226Z] self.assemblyList = {} [2018-01-24T17:04:11.979314Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:11.979408Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:11.979457Z] > for i in range(8)] [2018-01-24T17:04:11.979491Z] E FitsError: [2018-01-24T17:04:11.979656Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.979831Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.979875Z] E cfitsio error stack: [2018-01-24T17:04:11.979900Z] E {0} [2018-01-24T17:04:11.980116Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.980161Z] E cfitsio error stack: [2018-01-24T17:04:11.980184Z] E ' [2018-01-24T17:04:11.980197Z] [2018-01-24T17:04:11.980253Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:11.980356Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.980369Z] [2018-01-24T17:04:11.980463Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.980574Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.980657Z] that was used when compiling the application program: [2018-01-24T17:04:11.980721Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.980784Z] Version included by the application program = 5 [2018-01-24T17:04:11.980796Z] [2018-01-24T17:04:11.980878Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.980916Z] with the CFITSIO library. [2018-01-24T17:04:11.981012Z] _______________________ CameraGeomTestCase.testLinearity _______________________ [2018-01-24T17:04:11.981143Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.981172Z] [2018-01-24T17:04:11.981277Z] self = [2018-01-24T17:04:11.981295Z] [2018-01-24T17:04:11.981331Z] def setUp(self): [2018-01-24T17:04:11.981444Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:11.981564Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:11.981667Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:11.981723Z] self.assemblyList = {} [2018-01-24T17:04:11.981808Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:11.981899Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:11.981946Z] > for i in range(8)] [2018-01-24T17:04:11.981980Z] E FitsError: [2018-01-24T17:04:11.982120Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.982290Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.982334Z] E cfitsio error stack: [2018-01-24T17:04:11.982359Z] E {0} [2018-01-24T17:04:11.982562Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.982604Z] E cfitsio error stack: [2018-01-24T17:04:11.982625Z] E ' [2018-01-24T17:04:11.982636Z] [2018-01-24T17:04:11.982686Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:11.982780Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.982792Z] [2018-01-24T17:04:11.982903Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.983007Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.983080Z] that was used when compiling the application program: [2018-01-24T17:04:11.983148Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.983216Z] Version included by the application program = 5 [2018-01-24T17:04:11.983242Z] [2018-01-24T17:04:11.983338Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.983375Z] with the CFITSIO library. [2018-01-24T17:04:11.983468Z] _____________________ CameraGeomTestCase.testCameraSysRepr _____________________ [2018-01-24T17:04:11.983556Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.983567Z] [2018-01-24T17:04:11.983652Z] self = [2018-01-24T17:04:11.983664Z] [2018-01-24T17:04:11.983696Z] def setUp(self): [2018-01-24T17:04:11.983780Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:11.983863Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:11.983943Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:11.983999Z] self.assemblyList = {} [2018-01-24T17:04:11.984097Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:11.984191Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:11.984239Z] > for i in range(8)] [2018-01-24T17:04:11.984272Z] E FitsError: [2018-01-24T17:04:11.984422Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.984613Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.984675Z] E cfitsio error stack: [2018-01-24T17:04:11.984708Z] E {0} [2018-01-24T17:04:11.985000Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.985071Z] E cfitsio error stack: [2018-01-24T17:04:11.985137Z] E ' [2018-01-24T17:04:11.985154Z] [2018-01-24T17:04:11.985212Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:11.985315Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.985329Z] [2018-01-24T17:04:11.985423Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.985522Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.985594Z] that was used when compiling the application program: [2018-01-24T17:04:11.985663Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.985732Z] Version included by the application program = 5 [2018-01-24T17:04:11.985745Z] [2018-01-24T17:04:11.985834Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.985875Z] with the CFITSIO library. [2018-01-24T17:04:11.985977Z] ____________________ CameraGeomTestCase.testCameraPointRepr ____________________ [2018-01-24T17:04:11.986071Z] [gw4] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.986084Z] [2018-01-24T17:04:11.986179Z] self = [2018-01-24T17:04:11.986192Z] [2018-01-24T17:04:11.986227Z] def setUp(self): [2018-01-24T17:04:11.986340Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:11.986423Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:11.986502Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:11.986545Z] self.assemblyList = {} [2018-01-24T17:04:11.986624Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:11.986710Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:11.986754Z] > for i in range(8)] [2018-01-24T17:04:11.986785Z] E FitsError: [2018-01-24T17:04:11.986919Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.987083Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.987124Z] E cfitsio error stack: [2018-01-24T17:04:11.987148Z] E {0} [2018-01-24T17:04:11.987337Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.987379Z] E cfitsio error stack: [2018-01-24T17:04:11.987400Z] E ' [2018-01-24T17:04:11.987411Z] [2018-01-24T17:04:11.987462Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:11.987556Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.987568Z] [2018-01-24T17:04:11.987656Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.987748Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.987828Z] that was used when compiling the application program: [2018-01-24T17:04:11.987909Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.987978Z] Version included by the application program = 5 [2018-01-24T17:04:11.987991Z] [2018-01-24T17:04:11.988080Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.988120Z] with the CFITSIO library. [2018-01-24T17:04:11.988250Z] ____________________ CameraGeomTestCase.testTransformSlalib ____________________ [2018-01-24T17:04:11.988383Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.988403Z] [2018-01-24T17:04:11.988516Z] self = [2018-01-24T17:04:11.988542Z] [2018-01-24T17:04:11.988579Z] def setUp(self): [2018-01-24T17:04:11.988675Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:11.988767Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:11.988854Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:11.988918Z] self.assemblyList = {} [2018-01-24T17:04:11.989023Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:11.989142Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:11.989192Z] > for i in range(8)] [2018-01-24T17:04:11.989228Z] E FitsError: [2018-01-24T17:04:11.989384Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.989638Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.989712Z] E cfitsio error stack: [2018-01-24T17:04:11.989749Z] E {0} [2018-01-24T17:04:11.989955Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.990001Z] E cfitsio error stack: [2018-01-24T17:04:11.990024Z] E ' [2018-01-24T17:04:11.990037Z] [2018-01-24T17:04:11.990092Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:11.990194Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.990207Z] [2018-01-24T17:04:11.990312Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.990408Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.990479Z] that was used when compiling the application program: [2018-01-24T17:04:11.990559Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.990628Z] Version included by the application program = 5 [2018-01-24T17:04:11.990641Z] [2018-01-24T17:04:11.990729Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.990770Z] with the CFITSIO library. [2018-01-24T17:04:11.990872Z] ______________________ BackgroundTestCase.testApproximate ______________________ [2018-01-24T17:04:11.990978Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.990990Z] [2018-01-24T17:04:11.991078Z] self = [2018-01-24T17:04:11.991090Z] [2018-01-24T17:04:11.991135Z] def testApproximate(self): [2018-01-24T17:04:11.991211Z] """Test I/O for BackgroundLists with Approximate""" [2018-01-24T17:04:11.991296Z] # approx and interp should be very close, but not the same [2018-01-24T17:04:11.991358Z] img = self.getParabolaImage(256, 256) [2018-01-24T17:04:11.991374Z] [2018-01-24T17:04:11.991459Z] # try regular interpolated image (the default) [2018-01-24T17:04:11.991526Z] bgCtrl = afwMath.BackgroundControl(6, 6) [2018-01-24T17:04:11.991610Z] bgCtrl.setInterpStyle(afwMath.Interpolate.AKIMA_SPLINE) [2018-01-24T17:04:11.991694Z] bgCtrl.setUndersampleStyle(afwMath.REDUCE_INTERP_ORDER) [2018-01-24T17:04:11.991763Z] bkgd = afwMath.makeBackground(img, bgCtrl) [2018-01-24T17:04:11.991818Z] interpImage = bkgd.getImageF() [2018-01-24T17:04:11.991847Z] [2018-01-24T17:04:11.991937Z] with lsst.utils.tests.getTempFilePath("_bgi.fits") as bgiFile, \ [2018-01-24T17:04:11.992029Z] lsst.utils.tests.getTempFilePath("_bga.fits") as bgaFile: [2018-01-24T17:04:11.992093Z] bglInterp = afwMath.BackgroundList() [2018-01-24T17:04:11.992142Z] bglInterp.append(bkgd) [2018-01-24T17:04:11.992198Z] > bglInterp.writeFits(bgiFile) [2018-01-24T17:04:11.992210Z] [2018-01-24T17:04:11.992255Z] tests/test_background.py:757: [2018-01-24T17:04:11.992367Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:11.992408Z] [2018-01-24T17:04:11.992507Z] self = [2018-01-24T17:04:11.992636Z] fileName = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_background_testApproximate-_3RazC_bgi.fits' [2018-01-24T17:04:11.992660Z] flags = 0 [2018-01-24T17:04:11.992673Z] [2018-01-24T17:04:11.992734Z] def writeFits(self, fileName, flags=0): [2018-01-24T17:04:11.992813Z] """Save our list of Backgrounds to a file [2018-01-24T17:04:11.992913Z] @param fileName FITS file to write [2018-01-24T17:04:11.993039Z] @param flags Flags to control details of writing; currently unused, [2018-01-24T17:04:11.993135Z] but present for consistency with [2018-01-24T17:04:11.993249Z] afw.table.BaseCatalog.writeFits. [2018-01-24T17:04:11.993287Z] """ [2018-01-24T17:04:11.993314Z] [2018-01-24T17:04:11.993377Z] for i, bkgd in enumerate(self): [2018-01-24T17:04:11.993504Z] (bkgd, interpStyle, undersampleStyle, approxStyle, approxOrderX, approxOrderY, [2018-01-24T17:04:11.993573Z] approxWeighting) = bkgd [2018-01-24T17:04:11.993592Z] [2018-01-24T17:04:11.993657Z] statsImage = bkgd.getStatsImage() [2018-01-24T17:04:11.993675Z] [2018-01-24T17:04:11.993732Z] md = dafBase.PropertyList() [2018-01-24T17:04:11.993802Z] md.set("INTERPSTYLE", int(interpStyle)) [2018-01-24T17:04:11.993884Z] md.set("UNDERSAMPLESTYLE", int(undersampleStyle)) [2018-01-24T17:04:11.993954Z] md.set("APPROXSTYLE", int(approxStyle)) [2018-01-24T17:04:11.994021Z] md.set("APPROXORDERX", approxOrderX) [2018-01-24T17:04:11.994089Z] md.set("APPROXORDERY", approxOrderY) [2018-01-24T17:04:11.994163Z] md.set("APPROXWEIGHTING", approxWeighting) [2018-01-24T17:04:11.994220Z] bbox = bkgd.getImageBBox() [2018-01-24T17:04:11.994284Z] md.set("BKGD_X0", bbox.getMinX()) [2018-01-24T17:04:11.994348Z] md.set("BKGD_Y0", bbox.getMinY()) [2018-01-24T17:04:11.994417Z] md.set("BKGD_WIDTH", bbox.getWidth()) [2018-01-24T17:04:11.994488Z] md.set("BKGD_HEIGHT", bbox.getHeight()) [2018-01-24T17:04:11.994505Z] [2018-01-24T17:04:11.994610Z] statsImage.getImage().writeFits(fileName, md, "w" if i == 0 else "a") [2018-01-24T17:04:11.994692Z] > statsImage.getMask().writeFits(fileName, md, "a") [2018-01-24T17:04:11.994731Z] E FitsError: [2018-01-24T17:04:11.994882Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.995111Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_background_testApproximate-_3RazC_bgi.fits' with mode 'a' [2018-01-24T17:04:11.995162Z] E cfitsio error stack: [2018-01-24T17:04:11.995193Z] E {0} [2018-01-24T17:04:11.995448Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_background_testApproximate-_3RazC_bgi.fits' with mode 'a' [2018-01-24T17:04:11.995499Z] E cfitsio error stack: [2018-01-24T17:04:11.995526Z] E ' [2018-01-24T17:04:11.995539Z] [2018-01-24T17:04:11.995611Z] python/lsst/afw/math/backgroundList.py:123: FitsError [2018-01-24T17:04:11.995714Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.995727Z] [2018-01-24T17:04:11.995820Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.995921Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.995994Z] that was used when compiling the application program: [2018-01-24T17:04:11.996063Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.996132Z] Version included by the application program = 5 [2018-01-24T17:04:11.996145Z] [2018-01-24T17:04:11.996234Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.996274Z] with the CFITSIO library. [2018-01-24T17:04:11.996377Z] _________________________ CoordPtrTestCase.testMakeWcs _________________________ [2018-01-24T17:04:11.996474Z] [gw4] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.996487Z] [2018-01-24T17:04:11.996571Z] self = [2018-01-24T17:04:11.996584Z] [2018-01-24T17:04:11.996640Z] def testMakeWcs(self): [2018-01-24T17:04:11.996730Z] afwdataDir = lsst.utils.getPackageDir("afw") [2018-01-24T17:04:11.996847Z] path = os.path.join(afwdataDir, "tests", "data", "parent.fits") [2018-01-24T17:04:11.996922Z] > fitsHdr = image.readMetadata(path) [2018-01-24T17:04:11.996963Z] E FitsError: [2018-01-24T17:04:11.997111Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.997289Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.997334Z] E cfitsio error stack: [2018-01-24T17:04:11.997361Z] E {0} [2018-01-24T17:04:11.997567Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/parent.fits' with mode 'r' [2018-01-24T17:04:11.997613Z] E cfitsio error stack: [2018-01-24T17:04:11.997636Z] E ' [2018-01-24T17:04:11.997648Z] [2018-01-24T17:04:11.997701Z] tests/test_coordptr.py:54: FitsError [2018-01-24T17:04:11.997805Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:11.997818Z] [2018-01-24T17:04:11.997912Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:11.998012Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:11.998085Z] that was used when compiling the application program: [2018-01-24T17:04:11.998154Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:11.998223Z] Version included by the application program = 5 [2018-01-24T17:04:11.998263Z] [2018-01-24T17:04:11.998382Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:11.998453Z] with the CFITSIO library. [2018-01-24T17:04:11.998586Z] _____________________ CameraGeomTestCase.testFindDetectors _____________________ [2018-01-24T17:04:11.998689Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:11.998703Z] [2018-01-24T17:04:11.998797Z] self = [2018-01-24T17:04:11.998811Z] [2018-01-24T17:04:11.998846Z] def setUp(self): [2018-01-24T17:04:11.998940Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:11.999031Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:11.999118Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:11.999165Z] self.assemblyList = {} [2018-01-24T17:04:11.999252Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:11.999346Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:11.999393Z] > for i in range(8)] [2018-01-24T17:04:11.999427Z] E FitsError: [2018-01-24T17:04:11.999573Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:11.999751Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:11.999796Z] E cfitsio error stack: [2018-01-24T17:04:11.999850Z] E {0} [2018-01-24T17:04:12.000061Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.000108Z] E cfitsio error stack: [2018-01-24T17:04:12.000132Z] E ' [2018-01-24T17:04:12.000145Z] [2018-01-24T17:04:12.000203Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:12.000367Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.000396Z] [2018-01-24T17:04:12.000504Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.000611Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.000684Z] that was used when compiling the application program: [2018-01-24T17:04:12.000753Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.000821Z] Version included by the application program = 5 [2018-01-24T17:04:12.000834Z] [2018-01-24T17:04:12.000922Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.000963Z] with the CFITSIO library. [2018-01-24T17:04:12.001064Z] ________________________ CameraGeomTestCase.testFpBbox _________________________ [2018-01-24T17:04:12.001161Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.001174Z] [2018-01-24T17:04:12.001259Z] self = [2018-01-24T17:04:12.001272Z] [2018-01-24T17:04:12.001307Z] def setUp(self): [2018-01-24T17:04:12.001397Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:12.001486Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:12.001573Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:12.001619Z] self.assemblyList = {} [2018-01-24T17:04:12.001706Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:12.001800Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:12.001847Z] > for i in range(8)] [2018-01-24T17:04:12.001881Z] E FitsError: [2018-01-24T17:04:12.002026Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.002203Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.002248Z] E cfitsio error stack: [2018-01-24T17:04:12.002273Z] E {0} [2018-01-24T17:04:12.002478Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.002524Z] E cfitsio error stack: [2018-01-24T17:04:12.002548Z] E ' [2018-01-24T17:04:12.002561Z] [2018-01-24T17:04:12.002615Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:12.002717Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.002729Z] [2018-01-24T17:04:12.002822Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.002920Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.002992Z] that was used when compiling the application program: [2018-01-24T17:04:12.003060Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.003129Z] Version included by the application program = 5 [2018-01-24T17:04:12.003141Z] [2018-01-24T17:04:12.003230Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.003271Z] with the CFITSIO library. [2018-01-24T17:04:12.003673Z] _______________________ CameraGeomTestCase.testAccessor ________________________ [2018-01-24T17:04:12.003802Z] [gw11] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.003832Z] [2018-01-24T17:04:12.003936Z] self = [2018-01-24T17:04:12.003957Z] [2018-01-24T17:04:12.004003Z] def setUp(self): [2018-01-24T17:04:12.004119Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:12.004212Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:12.004298Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:12.004344Z] self.assemblyList = {} [2018-01-24T17:04:12.004432Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:12.004524Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:12.004571Z] > for i in range(8)] [2018-01-24T17:04:12.004606Z] E FitsError: [2018-01-24T17:04:12.004749Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.004928Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.004973Z] E cfitsio error stack: [2018-01-24T17:04:12.005000Z] E {0} [2018-01-24T17:04:12.005204Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.005249Z] E cfitsio error stack: [2018-01-24T17:04:12.005272Z] E ' [2018-01-24T17:04:12.005285Z] [2018-01-24T17:04:12.005339Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:12.005441Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.005455Z] [2018-01-24T17:04:12.005547Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.005645Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.005717Z] that was used when compiling the application program: [2018-01-24T17:04:12.005785Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.005853Z] Version included by the application program = 5 [2018-01-24T17:04:12.005865Z] [2018-01-24T17:04:12.005953Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.005994Z] with the CFITSIO library. [2018-01-24T17:04:12.007227Z] _______________________ BackgroundTestCase.testSubImage ________________________ [2018-01-24T17:04:12.007342Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.007357Z] [2018-01-24T17:04:12.007447Z] self = [2018-01-24T17:04:12.007461Z] [2018-01-24T17:04:12.007565Z] @unittest.skipIf(AfwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.007613Z] def testSubImage(self): [2018-01-24T17:04:12.007707Z] """Test getImage on a subregion of the full background image [2018-01-24T17:04:12.007726Z] [2018-01-24T17:04:12.007838Z] Using real image data is a cheap way to get a variable background [2018-01-24T17:04:12.007887Z] """ [2018-01-24T17:04:12.007951Z] > mi = self.getCfhtImage() [2018-01-24T17:04:12.007977Z] [2018-01-24T17:04:12.008024Z] tests/test_background.py:363: [2018-01-24T17:04:12.008126Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.008140Z] [2018-01-24T17:04:12.008227Z] self = [2018-01-24T17:04:12.008240Z] [2018-01-24T17:04:12.008283Z] def getCfhtImage(self): [2018-01-24T17:04:12.008363Z] """Get a portion of a CFHT image as a MaskedImageF""" [2018-01-24T17:04:12.008438Z] bbox = afwGeom.Box2I(afwGeom.Point2I(500, 2000), [2018-01-24T17:04:12.008514Z] afwGeom.Point2I(2079, 4609)) [2018-01-24T17:04:12.008594Z] imagePath = os.path.join( [2018-01-24T17:04:12.008684Z] AfwdataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.008773Z] > return afwImage.MaskedImageF(imagePath, PropertySet(), bbox) [2018-01-24T17:04:12.008807Z] E FitsError: [2018-01-24T17:04:12.008951Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.009163Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.009209Z] E cfitsio error stack: [2018-01-24T17:04:12.009235Z] E {0} [2018-01-24T17:04:12.009506Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.009566Z] E cfitsio error stack: [2018-01-24T17:04:12.009592Z] E ' [2018-01-24T17:04:12.009605Z] [2018-01-24T17:04:12.009661Z] tests/test_background.py:324: FitsError [2018-01-24T17:04:12.009763Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.009776Z] [2018-01-24T17:04:12.009868Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.009967Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.010039Z] that was used when compiling the application program: [2018-01-24T17:04:12.010108Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.010177Z] Version included by the application program = 5 [2018-01-24T17:04:12.010190Z] [2018-01-24T17:04:12.010278Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.010318Z] with the CFITSIO library. [2018-01-24T17:04:12.011105Z] ________________ ChebyshevBoundedFieldTestCase.testPersistence _________________ [2018-01-24T17:04:12.011225Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.011254Z] [2018-01-24T17:04:12.011398Z] self = [2018-01-24T17:04:12.011417Z] [2018-01-24T17:04:12.011475Z] def testPersistence(self): [2018-01-24T17:04:12.011602Z] """Test that we can fit 1-d arrays produced by a ChebyshevBoundedField and [2018-01-24T17:04:12.011670Z] get the same coefficients back. [2018-01-24T17:04:12.011700Z] """ [2018-01-24T17:04:12.011764Z] boxD = lsst.afw.geom.Box2D(self.bbox) [2018-01-24T17:04:12.011799Z] nPoints = 50 [2018-01-24T17:04:12.011888Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.011956Z] for ctrl, coefficients in self.cases: [2018-01-24T17:04:12.012040Z] inField = lsst.afw.math.ChebyshevBoundedField( [2018-01-24T17:04:12.012102Z] self.bbox, coefficients) [2018-01-24T17:04:12.012164Z] inField.writeFits(filename) [2018-01-24T17:04:12.012268Z] > outField = lsst.afw.math.ChebyshevBoundedField.readFits(filename) [2018-01-24T17:04:12.012311Z] E FitsError: [2018-01-24T17:04:12.012467Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.012707Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_chebyshevBoundedField_testPersistence-HxQWa_.fits' with mode 'r' [2018-01-24T17:04:12.012762Z] E cfitsio error stack: [2018-01-24T17:04:12.012798Z] E {0} [2018-01-24T17:04:12.013064Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_chebyshevBoundedField_testPersistence-HxQWa_.fits' with mode 'r' [2018-01-24T17:04:12.013120Z] E cfitsio error stack: [2018-01-24T17:04:12.013152Z] E ' [2018-01-24T17:04:12.013165Z] [2018-01-24T17:04:12.013234Z] tests/test_chebyshevBoundedField.py:313: FitsError [2018-01-24T17:04:12.013337Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.013350Z] [2018-01-24T17:04:12.013444Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.013544Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.013616Z] that was used when compiling the application program: [2018-01-24T17:04:12.013686Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.013754Z] Version included by the application program = 5 [2018-01-24T17:04:12.013767Z] [2018-01-24T17:04:12.013856Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.013898Z] with the CFITSIO library. [2018-01-24T17:04:12.014839Z] ________________________ DisplayTestCase.testImageTypes ________________________ [2018-01-24T17:04:12.014975Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.014994Z] [2018-01-24T17:04:12.015093Z] self = [2018-01-24T17:04:12.015121Z] [2018-01-24T17:04:12.015181Z] def testImageTypes(self): [2018-01-24T17:04:12.015305Z] """Check that we can display a range of types of image""" [2018-01-24T17:04:12.015412Z] with afwDisplay.getDisplay("dummy", "virtualDevice") as dummy: [2018-01-24T17:04:12.015489Z] for imageType in [afwImage.DecoratedImageF, [2018-01-24T17:04:12.015558Z] afwImage.ExposureF, [2018-01-24T17:04:12.015622Z] afwImage.ImageU, [2018-01-24T17:04:12.015687Z] afwImage.ImageI, [2018-01-24T17:04:12.015751Z] afwImage.ImageF, [2018-01-24T17:04:12.015823Z] afwImage.MaskedImageF, [2018-01-24T17:04:12.015871Z] ]: [2018-01-24T17:04:12.015934Z] > im = imageType(self.fileName) [2018-01-24T17:04:12.015978Z] E FitsError: [2018-01-24T17:04:12.016132Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.016359Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.016414Z] E cfitsio error stack: [2018-01-24T17:04:12.016449Z] E {0} [2018-01-24T17:04:12.016704Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.016759Z] E cfitsio error stack: [2018-01-24T17:04:12.016791Z] E ' [2018-01-24T17:04:12.016804Z] [2018-01-24T17:04:12.016856Z] tests/test_display.py:149: FitsError [2018-01-24T17:04:12.016958Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.016971Z] [2018-01-24T17:04:12.017064Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.017164Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.017237Z] that was used when compiling the application program: [2018-01-24T17:04:12.017305Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.017374Z] Version included by the application program = 5 [2018-01-24T17:04:12.017386Z] [2018-01-24T17:04:12.017474Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.017515Z] with the CFITSIO library. [2018-01-24T17:04:12.018549Z] ______________________ CameraGeomTestCase.testConstructor ______________________ [2018-01-24T17:04:12.018692Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.018710Z] [2018-01-24T17:04:12.018851Z] self = [2018-01-24T17:04:12.018878Z] [2018-01-24T17:04:12.018916Z] def setUp(self): [2018-01-24T17:04:12.019019Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:12.019114Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:12.019201Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:12.019247Z] self.assemblyList = {} [2018-01-24T17:04:12.019335Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:12.019428Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:12.019475Z] > for i in range(8)] [2018-01-24T17:04:12.019509Z] E FitsError: [2018-01-24T17:04:12.019653Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.019830Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.019875Z] E cfitsio error stack: [2018-01-24T17:04:12.019901Z] E {0} [2018-01-24T17:04:12.020106Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.020152Z] E cfitsio error stack: [2018-01-24T17:04:12.020174Z] E ' [2018-01-24T17:04:12.020187Z] [2018-01-24T17:04:12.020242Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:12.020344Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.020356Z] [2018-01-24T17:04:12.020449Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.020558Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.020629Z] that was used when compiling the application program: [2018-01-24T17:04:12.020696Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.020763Z] Version included by the application program = 5 [2018-01-24T17:04:12.020775Z] [2018-01-24T17:04:12.020861Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.020900Z] with the CFITSIO library. [2018-01-24T17:04:12.022168Z] ___________________________ DisplayTestCase.testMtv ____________________________ [2018-01-24T17:04:12.022354Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.022379Z] [2018-01-24T17:04:12.022470Z] self = [2018-01-24T17:04:12.022499Z] [2018-01-24T17:04:12.022539Z] def testMtv(self): [2018-01-24T17:04:12.022606Z] """Test basic image display""" [2018-01-24T17:04:12.022676Z] > exp = afwImage.ExposureF(self.fileName) [2018-01-24T17:04:12.022711Z] E FitsError: [2018-01-24T17:04:12.022869Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.023073Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.023119Z] E cfitsio error stack: [2018-01-24T17:04:12.023145Z] E {0} [2018-01-24T17:04:12.023365Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.023411Z] E cfitsio error stack: [2018-01-24T17:04:12.023434Z] E ' [2018-01-24T17:04:12.023447Z] [2018-01-24T17:04:12.023498Z] tests/test_display.py:70: FitsError [2018-01-24T17:04:12.023600Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.023612Z] [2018-01-24T17:04:12.023705Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.023803Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.023875Z] that was used when compiling the application program: [2018-01-24T17:04:12.023943Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.024012Z] Version included by the application program = 5 [2018-01-24T17:04:12.024025Z] [2018-01-24T17:04:12.024113Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.024154Z] with the CFITSIO library. [2018-01-24T17:04:12.025742Z] _______________________ DisplayTestCase.testTwoDisplays ________________________ [2018-01-24T17:04:12.025881Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.025909Z] [2018-01-24T17:04:12.026036Z] self = [2018-01-24T17:04:12.026060Z] [2018-01-24T17:04:12.026119Z] def testTwoDisplays(self): [2018-01-24T17:04:12.026211Z] """Test that we can do things with two frames""" [2018-01-24T17:04:12.026231Z] [2018-01-24T17:04:12.026297Z] > exp = afwImage.ExposureF(self.fileName) [2018-01-24T17:04:12.026331Z] E FitsError: [2018-01-24T17:04:12.026476Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.026671Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.026717Z] E cfitsio error stack: [2018-01-24T17:04:12.026744Z] E {0} [2018-01-24T17:04:12.026965Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.027022Z] E cfitsio error stack: [2018-01-24T17:04:12.027044Z] E ' [2018-01-24T17:04:12.027057Z] [2018-01-24T17:04:12.027107Z] tests/test_display.py:86: FitsError [2018-01-24T17:04:12.027205Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.027218Z] [2018-01-24T17:04:12.027307Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.027403Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.027472Z] that was used when compiling the application program: [2018-01-24T17:04:12.027554Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.027623Z] Version included by the application program = 5 [2018-01-24T17:04:12.027635Z] [2018-01-24T17:04:12.027724Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.027764Z] with the CFITSIO library. [2018-01-24T17:04:12.029453Z] _________________________ DisplayTestCase.testDrawing __________________________ [2018-01-24T17:04:12.029568Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.029583Z] [2018-01-24T17:04:12.029682Z] self = [2018-01-24T17:04:12.029698Z] [2018-01-24T17:04:12.029748Z] def testDrawing(self): [2018-01-24T17:04:12.029813Z] """Test drawing lines and glyphs""" [2018-01-24T17:04:12.029859Z] self.display0.erase() [2018-01-24T17:04:12.029876Z] [2018-01-24T17:04:12.029941Z] > exp = afwImage.ExposureF(self.fileName) [2018-01-24T17:04:12.029975Z] E FitsError: [2018-01-24T17:04:12.030120Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.030314Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.030391Z] E cfitsio error stack: [2018-01-24T17:04:12.030421Z] E {0} [2018-01-24T17:04:12.030643Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.030690Z] E cfitsio error stack: [2018-01-24T17:04:12.030713Z] E ' [2018-01-24T17:04:12.030727Z] [2018-01-24T17:04:12.030780Z] tests/test_display.py:113: FitsError [2018-01-24T17:04:12.030882Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.030916Z] virtual[0]._erase() [2018-01-24T17:04:12.030929Z] [2018-01-24T17:04:12.031022Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.031121Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.031193Z] that was used when compiling the application program: [2018-01-24T17:04:12.031262Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.031330Z] Version included by the application program = 5 [2018-01-24T17:04:12.031343Z] [2018-01-24T17:04:12.031431Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.031473Z] with the CFITSIO library. [2018-01-24T17:04:12.032994Z] _ UtilsBinaryTester.test_exe__Volumes_PS1_lsstsw_build_afw_tests_maskedImage1 __ [2018-01-24T17:04:12.033147Z] [gw5] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.033176Z] [2018-01-24T17:04:12.033341Z] args = (,) [2018-01-24T17:04:12.033522Z] self = [2018-01-24T17:04:12.033538Z] [2018-01-24T17:04:12.033590Z] def test_executable_runs(*args): [2018-01-24T17:04:12.033627Z] self = args[0] [2018-01-24T17:04:12.033684Z] > self.assertExecutable(executable) [2018-01-24T17:04:12.033697Z] [2018-01-24T17:04:12.033822Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:275: [2018-01-24T17:04:12.033924Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.034060Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:249: in assertExecutable [2018-01-24T17:04:12.034093Z] self.fail(msg) [2018-01-24T17:04:12.034235Z] E AssertionError: Bad exit status from '/Volumes/PS1/lsstsw/build/afw/tests/maskedImage1': 1 [2018-01-24T17:04:12.034337Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.034450Z] Running executable '/Volumes/PS1/lsstsw/build/afw/tests/maskedImage1' with no arguments... [2018-01-24T17:04:12.034463Z] [2018-01-24T17:04:12.034557Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.034657Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.034729Z] that was used when compiling the application program: [2018-01-24T17:04:12.034798Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.034866Z] Version included by the application program = 5 [2018-01-24T17:04:12.034879Z] [2018-01-24T17:04:12.034967Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.035007Z] with the CFITSIO library. [2018-01-24T17:04:12.035020Z] [2018-01-24T17:04:12.035121Z] ----------------------------- Captured stderr call ----------------------------- [2018-01-24T17:04:12.035407Z] Failed to open /Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits: cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.035445Z] cfitsio error stack: [2018-01-24T17:04:12.035458Z] [2018-01-24T17:04:12.035490Z] No leaks detected [2018-01-24T17:04:12.036636Z] ___ UtilsBinaryTester.test_exe__Volumes_PS1_lsstsw_build_afw_tests_ramFitsIO ___ [2018-01-24T17:04:12.036764Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.036781Z] [2018-01-24T17:04:12.036944Z] args = (,) [2018-01-24T17:04:12.037101Z] self = [2018-01-24T17:04:12.037115Z] [2018-01-24T17:04:12.037178Z] def test_executable_runs(*args): [2018-01-24T17:04:12.037222Z] self = args[0] [2018-01-24T17:04:12.037288Z] > self.assertExecutable(executable) [2018-01-24T17:04:12.037303Z] [2018-01-24T17:04:12.037429Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:275: [2018-01-24T17:04:12.037543Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.037691Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:249: in assertExecutable [2018-01-24T17:04:12.037731Z] self.fail(msg) [2018-01-24T17:04:12.037860Z] E AssertionError: Bad exit status from '/Volumes/PS1/lsstsw/build/afw/tests/ramFitsIO': 1 [2018-01-24T17:04:12.037981Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.038117Z] Running executable '/Volumes/PS1/lsstsw/build/afw/tests/ramFitsIO' with no arguments... [2018-01-24T17:04:12.038259Z] filepath A: /Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/fpC-005902-r6-0677_sub.fits [2018-01-24T17:04:12.038332Z] filepath B: fpC-005902-r6-0677_sub.fits [2018-01-24T17:04:12.038375Z] Testing RAM FITS... [2018-01-24T17:04:12.038393Z] [2018-01-24T17:04:12.038433Z] Running test 6... [2018-01-24T17:04:12.038452Z] [2018-01-24T17:04:12.038564Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.038685Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.038774Z] that was used when compiling the application program: [2018-01-24T17:04:12.038855Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.038940Z] Version included by the application program = 5 [2018-01-24T17:04:12.038957Z] [2018-01-24T17:04:12.039060Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.039114Z] with the CFITSIO library. [2018-01-24T17:04:12.039133Z] [2018-01-24T17:04:12.039254Z] ----------------------------- Captured stderr call ----------------------------- [2018-01-24T17:04:12.039321Z] Caught the following exception: [2018-01-24T17:04:12.039559Z] cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/fpC-005902-r6-0677_sub.fits' with mode 'r' [2018-01-24T17:04:12.039601Z] cfitsio error stack: [2018-01-24T17:04:12.039615Z] [2018-01-24T17:04:12.040102Z] ____________________ ExposureTestCase.testMakeExposureLeaks ____________________ [2018-01-24T17:04:12.040239Z] [gw5] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.040271Z] [2018-01-24T17:04:12.040378Z] self = [2018-01-24T17:04:12.040414Z] [2018-01-24T17:04:12.040449Z] def setUp(self): [2018-01-24T17:04:12.040527Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.040560Z] E FitsError: [2018-01-24T17:04:12.040700Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.040890Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.040935Z] E cfitsio error stack: [2018-01-24T17:04:12.040961Z] E {0} [2018-01-24T17:04:12.041220Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.041269Z] E cfitsio error stack: [2018-01-24T17:04:12.041293Z] E ' [2018-01-24T17:04:12.041306Z] [2018-01-24T17:04:12.041359Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.041462Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.041475Z] [2018-01-24T17:04:12.041568Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.041678Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.041748Z] that was used when compiling the application program: [2018-01-24T17:04:12.041814Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.041896Z] Version included by the application program = 5 [2018-01-24T17:04:12.041908Z] [2018-01-24T17:04:12.041997Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.042038Z] with the CFITSIO library. [2018-01-24T17:04:12.043723Z] ______________________ ExposureTestCase.testCopyExposure _______________________ [2018-01-24T17:04:12.043869Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.043893Z] [2018-01-24T17:04:12.043993Z] self = [2018-01-24T17:04:12.044015Z] [2018-01-24T17:04:12.044053Z] def setUp(self): [2018-01-24T17:04:12.044133Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.044168Z] E FitsError: [2018-01-24T17:04:12.044313Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.044508Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.044553Z] E cfitsio error stack: [2018-01-24T17:04:12.044581Z] E {0} [2018-01-24T17:04:12.044804Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.044849Z] E cfitsio error stack: [2018-01-24T17:04:12.044872Z] E ' [2018-01-24T17:04:12.044885Z] [2018-01-24T17:04:12.044938Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.045039Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.045052Z] [2018-01-24T17:04:12.045144Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.045243Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.045316Z] that was used when compiling the application program: [2018-01-24T17:04:12.045385Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.045454Z] Version included by the application program = 5 [2018-01-24T17:04:12.045466Z] [2018-01-24T17:04:12.045554Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.045595Z] with the CFITSIO library. [2018-01-24T17:04:12.047180Z] ______________________ ExposureTestCase.testReadWriteFits ______________________ [2018-01-24T17:04:12.047308Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.047326Z] [2018-01-24T17:04:12.047418Z] self = [2018-01-24T17:04:12.047432Z] [2018-01-24T17:04:12.047479Z] def setUp(self): [2018-01-24T17:04:12.047576Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.047612Z] E FitsError: [2018-01-24T17:04:12.047762Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.047960Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.048007Z] E cfitsio error stack: [2018-01-24T17:04:12.048033Z] E {0} [2018-01-24T17:04:12.048258Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.048304Z] E cfitsio error stack: [2018-01-24T17:04:12.048327Z] E ' [2018-01-24T17:04:12.048339Z] [2018-01-24T17:04:12.048392Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.048497Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.048510Z] [2018-01-24T17:04:12.048604Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.048703Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.048776Z] that was used when compiling the application program: [2018-01-24T17:04:12.048845Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.048914Z] Version included by the application program = 5 [2018-01-24T17:04:12.048927Z] [2018-01-24T17:04:12.049016Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.049057Z] with the CFITSIO library. [2018-01-24T17:04:12.050687Z] __ UtilsBinaryTester.test_exe__Volumes_PS1_lsstsw_build_afw_tests_background ___ [2018-01-24T17:04:12.050812Z] [gw11] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.050842Z] [2018-01-24T17:04:12.051008Z] args = (,) [2018-01-24T17:04:12.051162Z] self = [2018-01-24T17:04:12.051178Z] [2018-01-24T17:04:12.051232Z] def test_executable_runs(*args): [2018-01-24T17:04:12.051270Z] self = args[0] [2018-01-24T17:04:12.051328Z] > self.assertExecutable(executable) [2018-01-24T17:04:12.051341Z] [2018-01-24T17:04:12.051455Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:275: [2018-01-24T17:04:12.051558Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.051694Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:249: in assertExecutable [2018-01-24T17:04:12.051728Z] self.fail(msg) [2018-01-24T17:04:12.051846Z] E AssertionError: Bad exit status from '/Volumes/PS1/lsstsw/build/afw/tests/background': 201 [2018-01-24T17:04:12.051949Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.052060Z] Running executable '/Volumes/PS1/lsstsw/build/afw/tests/background' with no arguments... [2018-01-24T17:04:12.052099Z] Running 4 test cases... [2018-01-24T17:04:12.052111Z] [2018-01-24T17:04:12.052204Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.052305Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.052377Z] that was used when compiling the application program: [2018-01-24T17:04:12.052446Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.052514Z] Version included by the application program = 5 [2018-01-24T17:04:12.052527Z] [2018-01-24T17:04:12.052615Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.052656Z] with the CFITSIO library. [2018-01-24T17:04:12.052956Z] unknown location:0: fatal error: in "BackgroundTestImages": lsst::afw::fits::FitsError: cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/Statistics/v1_i1_g_m400_s20_f.fits' with mode 'r' [2018-01-24T17:04:12.053028Z] cfitsio error stack: [2018-01-24T17:04:12.053044Z] [2018-01-24T17:04:12.053136Z] tests/background.cc:84: last checkpoint: "BackgroundTestImages" entry. [2018-01-24T17:04:12.053149Z] [2018-01-24T17:04:12.053250Z] ----------------------------- Captured stderr call ----------------------------- [2018-01-24T17:04:12.053264Z] [2018-01-24T17:04:12.053340Z] *** 1 failure is detected in the test module "Background" [2018-01-24T17:04:12.054183Z] _______________________ ExposureTestCase.testImageSlices _______________________ [2018-01-24T17:04:12.054327Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.054356Z] [2018-01-24T17:04:12.054460Z] self = [2018-01-24T17:04:12.054485Z] [2018-01-24T17:04:12.054522Z] def setUp(self): [2018-01-24T17:04:12.054602Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.054636Z] E FitsError: [2018-01-24T17:04:12.054780Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.054974Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.055021Z] E cfitsio error stack: [2018-01-24T17:04:12.055048Z] E {0} [2018-01-24T17:04:12.055289Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.055331Z] E cfitsio error stack: [2018-01-24T17:04:12.055351Z] E ' [2018-01-24T17:04:12.055363Z] [2018-01-24T17:04:12.055411Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.055504Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.055516Z] [2018-01-24T17:04:12.055601Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.055706Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.055789Z] that was used when compiling the application program: [2018-01-24T17:04:12.055857Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.055926Z] Version included by the application program = 5 [2018-01-24T17:04:12.055938Z] [2018-01-24T17:04:12.056039Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.056078Z] with the CFITSIO library. [2018-01-24T17:04:12.057628Z] ___________________ ExposureTableTestCase.testReadV1Catalog ____________________ [2018-01-24T17:04:12.057753Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.057773Z] [2018-01-24T17:04:12.057889Z] self = [2018-01-24T17:04:12.057904Z] [2018-01-24T17:04:12.057957Z] def testReadV1Catalog(self): [2018-01-24T17:04:12.058017Z] testDir = os.path.dirname(__file__) [2018-01-24T17:04:12.058078Z] v1CatalogPath = os.path.join( [2018-01-24T17:04:12.058150Z] testDir, "data", "exposure_catalog_v1.fits") [2018-01-24T17:04:12.058234Z] > catV1 = lsst.afw.table.ExposureCatalog.readFits(v1CatalogPath) [2018-01-24T17:04:12.058265Z] E FitsError: [2018-01-24T17:04:12.058397Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.058600Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/exposure_catalog_v1.fits' with mode 'r' [2018-01-24T17:04:12.058646Z] E cfitsio error stack: [2018-01-24T17:04:12.058673Z] E {0} [2018-01-24T17:04:12.058902Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/exposure_catalog_v1.fits' with mode 'r' [2018-01-24T17:04:12.058956Z] E cfitsio error stack: [2018-01-24T17:04:12.058977Z] E ' [2018-01-24T17:04:12.058989Z] [2018-01-24T17:04:12.059043Z] tests/test_exposureTable.py:251: FitsError [2018-01-24T17:04:12.059149Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.059162Z] [2018-01-24T17:04:12.059254Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.059352Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.059424Z] that was used when compiling the application program: [2018-01-24T17:04:12.059493Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.059561Z] Version included by the application program = 5 [2018-01-24T17:04:12.059573Z] [2018-01-24T17:04:12.059683Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.059720Z] with the CFITSIO library. [2018-01-24T17:04:12.061189Z] ___________________ ExposureTestCase.testConversionToScalar ____________________ [2018-01-24T17:04:12.061303Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.061327Z] [2018-01-24T17:04:12.061431Z] self = [2018-01-24T17:04:12.061448Z] [2018-01-24T17:04:12.061481Z] def setUp(self): [2018-01-24T17:04:12.061555Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.061587Z] E FitsError: [2018-01-24T17:04:12.061732Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.061908Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.061949Z] E cfitsio error stack: [2018-01-24T17:04:12.061972Z] E {0} [2018-01-24T17:04:12.062184Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.062239Z] E cfitsio error stack: [2018-01-24T17:04:12.062262Z] E ' [2018-01-24T17:04:12.062273Z] [2018-01-24T17:04:12.062338Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.062440Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.062453Z] [2018-01-24T17:04:12.062545Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.062653Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.062737Z] that was used when compiling the application program: [2018-01-24T17:04:12.062806Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.062875Z] Version included by the application program = 5 [2018-01-24T17:04:12.062887Z] [2018-01-24T17:04:12.062976Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.063017Z] with the CFITSIO library. [2018-01-24T17:04:12.064685Z] _________________________ ExposureTestCase.testHasWcs __________________________ [2018-01-24T17:04:12.064800Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.064815Z] [2018-01-24T17:04:12.064913Z] self = [2018-01-24T17:04:12.064927Z] [2018-01-24T17:04:12.064975Z] def setUp(self): [2018-01-24T17:04:12.065069Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.065104Z] E FitsError: [2018-01-24T17:04:12.065256Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.065434Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.065501Z] E cfitsio error stack: [2018-01-24T17:04:12.065528Z] E {0} [2018-01-24T17:04:12.065752Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.065796Z] E cfitsio error stack: [2018-01-24T17:04:12.065818Z] E ' [2018-01-24T17:04:12.065831Z] [2018-01-24T17:04:12.065882Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.065981Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.065993Z] [2018-01-24T17:04:12.066084Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.066189Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.066254Z] that was used when compiling the application program: [2018-01-24T17:04:12.066317Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.066379Z] Version included by the application program = 5 [2018-01-24T17:04:12.066391Z] [2018-01-24T17:04:12.066483Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.066519Z] with the CFITSIO library. [2018-01-24T17:04:12.068068Z] _______________________ ExposureTestCase.testArchiveKeys _______________________ [2018-01-24T17:04:12.068188Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.068202Z] [2018-01-24T17:04:12.068321Z] self = [2018-01-24T17:04:12.068347Z] [2018-01-24T17:04:12.068396Z] def setUp(self): [2018-01-24T17:04:12.068485Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.068520Z] E FitsError: [2018-01-24T17:04:12.068665Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.068871Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.068925Z] E cfitsio error stack: [2018-01-24T17:04:12.068948Z] E {0} [2018-01-24T17:04:12.069148Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.069189Z] E cfitsio error stack: [2018-01-24T17:04:12.069210Z] E ' [2018-01-24T17:04:12.069221Z] [2018-01-24T17:04:12.069268Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.069359Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.069371Z] [2018-01-24T17:04:12.069454Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.069543Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.069607Z] that was used when compiling the application program: [2018-01-24T17:04:12.069669Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.069730Z] Version included by the application program = 5 [2018-01-24T17:04:12.069741Z] [2018-01-24T17:04:12.069821Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.069857Z] with the CFITSIO library. [2018-01-24T17:04:12.071327Z] ______________________ ExposureTestCase.testReadMetadata _______________________ [2018-01-24T17:04:12.071472Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.071491Z] [2018-01-24T17:04:12.071585Z] self = [2018-01-24T17:04:12.071598Z] [2018-01-24T17:04:12.071653Z] def setUp(self): [2018-01-24T17:04:12.071751Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.071784Z] E FitsError: [2018-01-24T17:04:12.071925Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.072115Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.072160Z] E cfitsio error stack: [2018-01-24T17:04:12.072186Z] E {0} [2018-01-24T17:04:12.072412Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.072469Z] E cfitsio error stack: [2018-01-24T17:04:12.072492Z] E ' [2018-01-24T17:04:12.072505Z] [2018-01-24T17:04:12.072556Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.072656Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.072668Z] [2018-01-24T17:04:12.072758Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.072863Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.072930Z] that was used when compiling the application program: [2018-01-24T17:04:12.072993Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.073056Z] Version included by the application program = 5 [2018-01-24T17:04:12.073068Z] [2018-01-24T17:04:12.073149Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.073187Z] with the CFITSIO library. [2018-01-24T17:04:12.074630Z] _______________________ ExposureTestCase.testProperties ________________________ [2018-01-24T17:04:12.074766Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.074795Z] [2018-01-24T17:04:12.074896Z] self = [2018-01-24T17:04:12.074912Z] [2018-01-24T17:04:12.074946Z] def setUp(self): [2018-01-24T17:04:12.075024Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.075057Z] E FitsError: [2018-01-24T17:04:12.075197Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.075387Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.075431Z] E cfitsio error stack: [2018-01-24T17:04:12.075456Z] E {0} [2018-01-24T17:04:12.075672Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.075717Z] E cfitsio error stack: [2018-01-24T17:04:12.075739Z] E ' [2018-01-24T17:04:12.075751Z] [2018-01-24T17:04:12.075825Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.075956Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.075976Z] [2018-01-24T17:04:12.076070Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.076169Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.076242Z] that was used when compiling the application program: [2018-01-24T17:04:12.076310Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.076391Z] Version included by the application program = 5 [2018-01-24T17:04:12.076403Z] [2018-01-24T17:04:12.076490Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.076529Z] with the CFITSIO library. [2018-01-24T17:04:12.078325Z] ___________________ ExposureTestCase.testExposureInfoSetNone ___________________ [2018-01-24T17:04:12.078465Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.078484Z] [2018-01-24T17:04:12.078591Z] self = [2018-01-24T17:04:12.078632Z] [2018-01-24T17:04:12.078671Z] def setUp(self): [2018-01-24T17:04:12.078751Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.078784Z] E FitsError: [2018-01-24T17:04:12.078953Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.079158Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.079204Z] E cfitsio error stack: [2018-01-24T17:04:12.079231Z] E {0} [2018-01-24T17:04:12.079460Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.079505Z] E cfitsio error stack: [2018-01-24T17:04:12.079527Z] E ' [2018-01-24T17:04:12.079539Z] [2018-01-24T17:04:12.079589Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.079688Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.079700Z] [2018-01-24T17:04:12.079789Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.079884Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.079954Z] that was used when compiling the application program: [2018-01-24T17:04:12.080021Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.080087Z] Version included by the application program = 5 [2018-01-24T17:04:12.080099Z] [2018-01-24T17:04:12.080184Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.080224Z] with the CFITSIO library. [2018-01-24T17:04:12.081701Z] ________________________ ImageScalingTestCase.testRange ________________________ [2018-01-24T17:04:12.081817Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.081836Z] [2018-01-24T17:04:12.081944Z] self = [2018-01-24T17:04:12.081961Z] [2018-01-24T17:04:12.082012Z] def testRange(self): [2018-01-24T17:04:12.082119Z] """Test that the RANGE scaling works on floating-point inputs [2018-01-24T17:04:12.082138Z] [2018-01-24T17:04:12.082256Z] We deliberately don't include BITPIX=64 because int64 provides [2018-01-24T17:04:12.082379Z] a larger dynamic range than 'double BSCALE' can handle. [2018-01-24T17:04:12.082414Z] """ [2018-01-24T17:04:12.082541Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.082600Z] bitpixList = (8, 16, 32) [2018-01-24T17:04:12.082691Z] for cls, bitpix in itertools.product(classList, bitpixList): [2018-01-24T17:04:12.082749Z] > self.checkRange(cls, bitpix) [2018-01-24T17:04:12.082761Z] [2018-01-24T17:04:12.082824Z] tests/test_fitsCompression.py:292: [2018-01-24T17:04:12.082948Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.083023Z] tests/test_fitsCompression.py:243: in checkRange [2018-01-24T17:04:12.083156Z] original, unpersisted, bscale, bzero, minValue, maxValue = self.makeImage(ImageClass, scaling, False) [2018-01-24T17:04:12.083276Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.083293Z] [2018-01-24T17:04:12.083433Z] self = [2018-01-24T17:04:12.083545Z] ImageClass = [2018-01-24T17:04:12.083756Z] scaling = ImageScalingOptions(algorithm=u'RANGE', bitpix=8, maskPlanes=[u'BAD'], seed=1,...vel=4.000000, quantizePad=5.000000, fuzz=False, bscale=1.000000, bzero=0.000000 [2018-01-24T17:04:12.083790Z] addNoise = False [2018-01-24T17:04:12.083803Z] [2018-01-24T17:04:12.083883Z] def makeImage(self, ImageClass, scaling, addNoise=True): [2018-01-24T17:04:12.083937Z] """Make an image for testing [2018-01-24T17:04:12.083954Z] [2018-01-24T17:04:12.084041Z] We create an image, persist and unpersist it, returning [2018-01-24T17:04:12.084094Z] some data to the caller. [2018-01-24T17:04:12.084112Z] [2018-01-24T17:04:12.084149Z] Parameters [2018-01-24T17:04:12.084186Z] ---------- [2018-01-24T17:04:12.084270Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.084342Z] Class of image to create. [2018-01-24T17:04:12.084416Z] scaling : `lsst.afw.fits.ImageScalingOptions` [2018-01-24T17:04:12.084485Z] Scaling to apply during persistence. [2018-01-24T17:04:12.084542Z] addNoise : `bool` [2018-01-24T17:04:12.084595Z] Add noise to image? [2018-01-24T17:04:12.084612Z] [2018-01-24T17:04:12.084645Z] Returns [2018-01-24T17:04:12.084679Z] ------- [2018-01-24T17:04:12.084753Z] image : `lsst.afw.image.Image` (ImageClass) [2018-01-24T17:04:12.084800Z] Created image. [2018-01-24T17:04:12.084881Z] unpersisted : `lsst.afw.image.Image` (ImageClass) [2018-01-24T17:04:12.084945Z] Unpersisted image. [2018-01-24T17:04:12.085008Z] bscale, bzero : `float` [2018-01-24T17:04:12.085074Z] FITS scale factor and zero used. [2018-01-24T17:04:12.085132Z] minValue, maxValue : `float` [2018-01-24T17:04:12.085223Z] Minimum and maximum value given the nominated scaling. [2018-01-24T17:04:12.085253Z] """ [2018-01-24T17:04:12.085307Z] image = ImageClass(self.bbox) [2018-01-24T17:04:12.085370Z] mask = lsst.afw.image.Mask(self.bbox) [2018-01-24T17:04:12.085426Z] mask.addMaskPlane(self.badMask) [2018-01-24T17:04:12.085493Z] bad = mask.getPlaneBitMask(self.badMask) [2018-01-24T17:04:12.085537Z] image.set(self.base) [2018-01-24T17:04:12.085629Z] image.set(self.highPixel[0], self.highPixel[1], self.highValue) [2018-01-24T17:04:12.085718Z] image.set(self.lowPixel[0], self.lowPixel[1], self.lowValue) [2018-01-24T17:04:12.085816Z] image.set(self.maskedPixel[0], self.maskedPixel[1], self.maskedValue) [2018-01-24T17:04:12.085900Z] mask.set(self.maskedPixel[0], self.maskedPixel[1], bad) [2018-01-24T17:04:12.085917Z] [2018-01-24T17:04:12.085976Z] rng = np.random.RandomState(12345) [2018-01-24T17:04:12.086031Z] dtype = image.getArray().dtype [2018-01-24T17:04:12.086066Z] if addNoise: [2018-01-24T17:04:12.086192Z] image.getArray()[:] += rng.normal(0.0, self.stdev, image.getArray().shape).astype(dtype) [2018-01-24T17:04:12.086209Z] [2018-01-24T17:04:12.086297Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.086375Z] with lsst.afw.fits.Fits(filename, "w") as fits: [2018-01-24T17:04:12.086461Z] options = lsst.afw.fits.ImageWriteOptions(scaling) [2018-01-24T17:04:12.086533Z] header = lsst.daf.base.PropertyList() [2018-01-24T17:04:12.086613Z] image.writeFits(fits, options, header, mask) [2018-01-24T17:04:12.086694Z] > unpersisted = ImageClass(filename) [2018-01-24T17:04:12.086747Z] E FitsError: [2018-01-24T17:04:12.086957Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.087208Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testRange-1nkZPg.fits' with mode 'r' [2018-01-24T17:04:12.087263Z] E cfitsio error stack: [2018-01-24T17:04:12.087295Z] E {0} [2018-01-24T17:04:12.087543Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testRange-1nkZPg.fits' with mode 'r' [2018-01-24T17:04:12.087621Z] E cfitsio error stack: [2018-01-24T17:04:12.087652Z] E ' [2018-01-24T17:04:12.087665Z] [2018-01-24T17:04:12.087727Z] tests/test_fitsCompression.py:146: FitsError [2018-01-24T17:04:12.087829Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.087843Z] [2018-01-24T17:04:12.087936Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.088035Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.088107Z] that was used when compiling the application program: [2018-01-24T17:04:12.088176Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.088245Z] Version included by the application program = 5 [2018-01-24T17:04:12.088257Z] [2018-01-24T17:04:12.088345Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.088385Z] with the CFITSIO library. [2018-01-24T17:04:12.088487Z] ___________________ ExposureTestCase.testDeepCopySubMetadata ___________________ [2018-01-24T17:04:12.088581Z] [gw4] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.088594Z] [2018-01-24T17:04:12.088699Z] self = [2018-01-24T17:04:12.088712Z] [2018-01-24T17:04:12.088745Z] def setUp(self): [2018-01-24T17:04:12.088823Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.088856Z] E FitsError: [2018-01-24T17:04:12.088996Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.089185Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.089229Z] E cfitsio error stack: [2018-01-24T17:04:12.089254Z] E {0} [2018-01-24T17:04:12.089475Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.089516Z] E cfitsio error stack: [2018-01-24T17:04:12.089537Z] E ' [2018-01-24T17:04:12.089549Z] [2018-01-24T17:04:12.089597Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.089690Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.089702Z] [2018-01-24T17:04:12.089802Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.089912Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.089984Z] that was used when compiling the application program: [2018-01-24T17:04:12.090053Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.090122Z] Version included by the application program = 5 [2018-01-24T17:04:12.090148Z] [2018-01-24T17:04:12.090235Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.090275Z] with the CFITSIO library. [2018-01-24T17:04:12.090474Z] ________________ ExposureTestCase.testVisitInfoFitsPersistence _________________ [2018-01-24T17:04:12.090589Z] [gw4] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.090606Z] [2018-01-24T17:04:12.090719Z] self = [2018-01-24T17:04:12.090732Z] [2018-01-24T17:04:12.090766Z] def setUp(self): [2018-01-24T17:04:12.090855Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.090887Z] E FitsError: [2018-01-24T17:04:12.091054Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.091250Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.091307Z] E cfitsio error stack: [2018-01-24T17:04:12.091333Z] E {0} [2018-01-24T17:04:12.091567Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.091612Z] E cfitsio error stack: [2018-01-24T17:04:12.091635Z] E ' [2018-01-24T17:04:12.091648Z] [2018-01-24T17:04:12.091700Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.091806Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.091819Z] [2018-01-24T17:04:12.091912Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.092011Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.092083Z] that was used when compiling the application program: [2018-01-24T17:04:12.092152Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.092221Z] Version included by the application program = 5 [2018-01-24T17:04:12.092234Z] [2018-01-24T17:04:12.092322Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.092363Z] with the CFITSIO library. [2018-01-24T17:04:12.093734Z] __________________ ImageCompressionTestCase.testQuantization ___________________ [2018-01-24T17:04:12.093866Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.093902Z] [2018-01-24T17:04:12.094046Z] self = [2018-01-24T17:04:12.094065Z] [2018-01-24T17:04:12.094116Z] def testQuantization(self): [2018-01-24T17:04:12.094251Z] """Test that our quantization produces the same values as cfitsio [2018-01-24T17:04:12.094275Z] [2018-01-24T17:04:12.094412Z] Our quantization is more configurable (e.g., choice of scaling algorithm, [2018-01-24T17:04:12.094545Z] specifying mask planes) and extensible (logarithmic, asinh scalings) [2018-01-24T17:04:12.094693Z] than cfitsio's. However, cfitsio uses its own fuzz ("subtractive dithering") [2018-01-24T17:04:12.094804Z] when reading the data, so if we don't want to add random values twice, [2018-01-24T17:04:12.094914Z] we need to be sure that we're using the same random values. To check that, [2018-01-24T17:04:12.095019Z] we write one image with our scaling+compression, and one with cfitsio's [2018-01-24T17:04:12.095127Z] compression using exactly the BSCALE and dither seed we used for our own. [2018-01-24T17:04:12.095232Z] That way, the two codes will quantize independently, and we can compare [2018-01-24T17:04:12.095272Z] the results. [2018-01-24T17:04:12.095301Z] """ [2018-01-24T17:04:12.095340Z] bscaleSet = 1.0 [2018-01-24T17:04:12.095408Z] bzeroSet = self.background - 10*self.noise [2018-01-24T17:04:12.095474Z] algorithm = ImageCompressionOptions.GZIP [2018-01-24T17:04:12.095562Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.095642Z] tilesList = ((4, 5), (0, 0), (0, 5), (4, 0), (0, 1)) [2018-01-24T17:04:12.095728Z] for cls, tiles in itertools.product(classList, tilesList): [2018-01-24T17:04:12.095798Z] tiles = np.array(tiles, dtype=np.int64) [2018-01-24T17:04:12.095899Z] compression = ImageCompressionOptions(algorithm, tiles, -bscaleSet) [2018-01-24T17:04:12.095959Z] original = self.makeImage(cls) [2018-01-24T17:04:12.096059Z] with lsst.utils.tests.getTempFilePath(self.extension) as filename: [2018-01-24T17:04:12.096143Z] with lsst.afw.fits.Fits(filename, "w") as fits: [2018-01-24T17:04:12.096238Z] options = lsst.afw.fits.ImageWriteOptions(compression) [2018-01-24T17:04:12.096311Z] original.writeFits(fits, options) [2018-01-24T17:04:12.096394Z] > cfitsio = cls(filename) [2018-01-24T17:04:12.096441Z] E FitsError: [2018-01-24T17:04:12.096596Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.096869Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testQuantization-mNs_pS.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.096932Z] E cfitsio error stack: [2018-01-24T17:04:12.096972Z] E {0} [2018-01-24T17:04:12.097259Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testQuantization-mNs_pS.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.097315Z] E cfitsio error stack: [2018-01-24T17:04:12.097347Z] E ' [2018-01-24T17:04:12.097360Z] [2018-01-24T17:04:12.097421Z] tests/test_fitsCompression.py:709: FitsError [2018-01-24T17:04:12.097527Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.097541Z] [2018-01-24T17:04:12.097633Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.097732Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.097804Z] that was used when compiling the application program: [2018-01-24T17:04:12.097874Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.097944Z] Version included by the application program = 5 [2018-01-24T17:04:12.097958Z] [2018-01-24T17:04:12.098063Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.098121Z] with the CFITSIO library. [2018-01-24T17:04:12.098229Z] ____________________ ExposureTableTestCase.testPersistence _____________________ [2018-01-24T17:04:12.098327Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.098340Z] [2018-01-24T17:04:12.098456Z] self = [2018-01-24T17:04:12.098474Z] [2018-01-24T17:04:12.098522Z] def testPersistence(self): [2018-01-24T17:04:12.098609Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.098666Z] self.cat.writeFits(tmpFile) [2018-01-24T17:04:12.098754Z] > cat1 = lsst.afw.table.ExposureCatalog.readFits(tmpFile) [2018-01-24T17:04:12.098793Z] E FitsError: [2018-01-24T17:04:12.098943Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.099167Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_exposureTable_testPersistence-kSnvkn.fits' with mode 'r' [2018-01-24T17:04:12.099217Z] E cfitsio error stack: [2018-01-24T17:04:12.099248Z] E {0} [2018-01-24T17:04:12.099499Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_exposureTable_testPersistence-kSnvkn.fits' with mode 'r' [2018-01-24T17:04:12.099550Z] E cfitsio error stack: [2018-01-24T17:04:12.099578Z] E ' [2018-01-24T17:04:12.099590Z] [2018-01-24T17:04:12.099650Z] tests/test_exposureTable.py:175: FitsError [2018-01-24T17:04:12.099752Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.099765Z] [2018-01-24T17:04:12.099857Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.099956Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.100028Z] that was used when compiling the application program: [2018-01-24T17:04:12.100097Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.100165Z] Version included by the application program = 5 [2018-01-24T17:04:12.100179Z] [2018-01-24T17:04:12.100267Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.100308Z] with the CFITSIO library. [2018-01-24T17:04:12.101542Z] UtilsBinaryTester.test_exe__Volumes_PS1_lsstsw_build_afw_tests_test_fitsTables [2018-01-24T17:04:12.101651Z] [gw2] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.101666Z] [2018-01-24T17:04:12.101835Z] args = (,) [2018-01-24T17:04:12.101992Z] self = [2018-01-24T17:04:12.102007Z] [2018-01-24T17:04:12.102059Z] def test_executable_runs(*args): [2018-01-24T17:04:12.102096Z] self = args[0] [2018-01-24T17:04:12.102153Z] > self.assertExecutable(executable) [2018-01-24T17:04:12.102166Z] [2018-01-24T17:04:12.102290Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:275: [2018-01-24T17:04:12.102392Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.102528Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:249: in assertExecutable [2018-01-24T17:04:12.102561Z] self.fail(msg) [2018-01-24T17:04:12.102694Z] E AssertionError: Bad exit status from '/Volumes/PS1/lsstsw/build/afw/tests/test_fitsTables': 201 [2018-01-24T17:04:12.102793Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.102919Z] Running executable '/Volumes/PS1/lsstsw/build/afw/tests/test_fitsTables' with no arguments... [2018-01-24T17:04:12.102958Z] Running 2 test cases... [2018-01-24T17:04:12.102971Z] [2018-01-24T17:04:12.103064Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.103163Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.103247Z] that was used when compiling the application program: [2018-01-24T17:04:12.103314Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.103381Z] Version included by the application program = 5 [2018-01-24T17:04:12.103393Z] [2018-01-24T17:04:12.103479Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.103518Z] with the CFITSIO library. [2018-01-24T17:04:12.103730Z] unknown location:0: fatal error: in "testFits": lsst::afw::fits::FitsError: cfitsio error: could not open the named file (104) : Opening file 'tests/data/testTable.fits' with mode 'r' [2018-01-24T17:04:12.103766Z] cfitsio error stack: [2018-01-24T17:04:12.103778Z] [2018-01-24T17:04:12.103839Z] tests/test_fitsTables.cc:117: last checkpoint [2018-01-24T17:04:12.103851Z] [2018-01-24T17:04:12.103950Z] ----------------------------- Captured stderr call ----------------------------- [2018-01-24T17:04:12.103962Z] [2018-01-24T17:04:12.104039Z] *** 1 failure is detected in the test module "table - fits" [2018-01-24T17:04:12.105045Z] _________________ ExposureTestCase.testExposureInfoConstructor _________________ [2018-01-24T17:04:12.105182Z] [gw2] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.105205Z] [2018-01-24T17:04:12.105334Z] self = [2018-01-24T17:04:12.105359Z] [2018-01-24T17:04:12.105395Z] def setUp(self): [2018-01-24T17:04:12.105476Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.105510Z] E FitsError: [2018-01-24T17:04:12.105654Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.105849Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.105923Z] E cfitsio error stack: [2018-01-24T17:04:12.105953Z] E {0} [2018-01-24T17:04:12.106186Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.106242Z] E cfitsio error stack: [2018-01-24T17:04:12.106263Z] E ' [2018-01-24T17:04:12.106276Z] [2018-01-24T17:04:12.106324Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.106417Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.106429Z] [2018-01-24T17:04:12.106514Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.106621Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.106691Z] that was used when compiling the application program: [2018-01-24T17:04:12.106757Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.106823Z] Version included by the application program = 5 [2018-01-24T17:04:12.106835Z] [2018-01-24T17:04:12.106921Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.106972Z] with the CFITSIO library. [2018-01-24T17:04:12.108495Z] _________________________ ExposureTestCase.testNullWcs _________________________ [2018-01-24T17:04:12.108610Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.108628Z] [2018-01-24T17:04:12.108714Z] self = [2018-01-24T17:04:12.108729Z] [2018-01-24T17:04:12.108761Z] def setUp(self): [2018-01-24T17:04:12.108835Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.108867Z] E FitsError: [2018-01-24T17:04:12.109000Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.109212Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.109258Z] E cfitsio error stack: [2018-01-24T17:04:12.109284Z] E {0} [2018-01-24T17:04:12.109529Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.109571Z] E cfitsio error stack: [2018-01-24T17:04:12.109592Z] E ' [2018-01-24T17:04:12.109603Z] [2018-01-24T17:04:12.109651Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.109745Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.109757Z] [2018-01-24T17:04:12.109843Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.109933Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.110012Z] that was used when compiling the application program: [2018-01-24T17:04:12.110079Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.110145Z] Version included by the application program = 5 [2018-01-24T17:04:12.110157Z] [2018-01-24T17:04:12.110243Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.110283Z] with the CFITSIO library. [2018-01-24T17:04:12.111838Z] _____________________ GaussianPsfTestCase.testPersistence ______________________ [2018-01-24T17:04:12.111967Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.111986Z] [2018-01-24T17:04:12.112092Z] self = [2018-01-24T17:04:12.112104Z] [2018-01-24T17:04:12.112170Z] def testPersistence(self): [2018-01-24T17:04:12.112259Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.112315Z] self.psf.writeFits(filename) [2018-01-24T17:04:12.112415Z] > psf = lsst.afw.detection.GaussianPsf.readFits(filename) [2018-01-24T17:04:12.112453Z] E FitsError: [2018-01-24T17:04:12.112603Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.112834Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_gaussianPsf_testPersistence-5samje.fits' with mode 'r' [2018-01-24T17:04:12.112883Z] E cfitsio error stack: [2018-01-24T17:04:12.112913Z] E {0} [2018-01-24T17:04:12.113154Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_gaussianPsf_testPersistence-5samje.fits' with mode 'r' [2018-01-24T17:04:12.113216Z] E cfitsio error stack: [2018-01-24T17:04:12.113241Z] E ' [2018-01-24T17:04:12.113252Z] [2018-01-24T17:04:12.113320Z] tests/test_gaussianPsf.py:113: FitsError [2018-01-24T17:04:12.113419Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.113432Z] [2018-01-24T17:04:12.113535Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.113634Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.113705Z] that was used when compiling the application program: [2018-01-24T17:04:12.113773Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.113842Z] Version included by the application program = 5 [2018-01-24T17:04:12.113855Z] [2018-01-24T17:04:12.113942Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.113983Z] with the CFITSIO library. [2018-01-24T17:04:12.115418Z] UtilsBinaryTester.test_exe__Volumes_PS1_lsstsw_build_afw_tests_test_tableArchives [2018-01-24T17:04:12.115563Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.115593Z] [2018-01-24T17:04:12.115768Z] args = (,) [2018-01-24T17:04:12.115928Z] self = [2018-01-24T17:04:12.115942Z] [2018-01-24T17:04:12.115993Z] def test_executable_runs(*args): [2018-01-24T17:04:12.116030Z] self = args[0] [2018-01-24T17:04:12.116102Z] > self.assertExecutable(executable) [2018-01-24T17:04:12.116115Z] [2018-01-24T17:04:12.116229Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:275: [2018-01-24T17:04:12.116332Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.116493Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:249: in assertExecutable [2018-01-24T17:04:12.116526Z] self.fail(msg) [2018-01-24T17:04:12.116653Z] E AssertionError: Bad exit status from '/Volumes/PS1/lsstsw/build/afw/tests/test_tableArchives': 201 [2018-01-24T17:04:12.116770Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.116889Z] Running executable '/Volumes/PS1/lsstsw/build/afw/tests/test_tableArchives' with no arguments... [2018-01-24T17:04:12.116928Z] Running 15 test cases... [2018-01-24T17:04:12.116941Z] [2018-01-24T17:04:12.117031Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.117127Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.117197Z] that was used when compiling the application program: [2018-01-24T17:04:12.117276Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.117345Z] Version included by the application program = 5 [2018-01-24T17:04:12.117358Z] [2018-01-24T17:04:12.117446Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.117514Z] with the CFITSIO library. [2018-01-24T17:04:12.117794Z] unknown location:0: fatal error: in "ArchiveImporter": lsst::afw::fits::FitsError: cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/archiveImportTest.fits' with mode 'r' [2018-01-24T17:04:12.117832Z] cfitsio error stack: [2018-01-24T17:04:12.117844Z] [2018-01-24T17:04:12.117937Z] tests/test_tableArchives.cc:683: last checkpoint: "ArchiveImporter" entry. [2018-01-24T17:04:12.117950Z] [2018-01-24T17:04:12.118050Z] ----------------------------- Captured stderr call ----------------------------- [2018-01-24T17:04:12.118156Z] -------------------------------------------------------------------------------------- [2018-01-24T17:04:12.118251Z] The following warning is expected, and is an indication the test has passed. [2018-01-24T17:04:12.118358Z] -------------------------------------------------------------------------------------- [2018-01-24T17:04:12.118371Z] [2018-01-24T17:04:12.118452Z] *** 1 failure is detected in the test module "table - archives" [2018-01-24T17:04:12.118932Z] ________________________ ImageScalingTestCase.testNone _________________________ [2018-01-24T17:04:12.119054Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.119079Z] [2018-01-24T17:04:12.119196Z] self = [2018-01-24T17:04:12.119216Z] [2018-01-24T17:04:12.119278Z] def testNone(self): [2018-01-24T17:04:12.119387Z] """Test that the NONE scaling works on floating-point inputs""" [2018-01-24T17:04:12.119492Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.119553Z] bitpixList = (8, 16, 32) [2018-01-24T17:04:12.119668Z] for cls, bitpix in itertools.product(classList, bitpixList): [2018-01-24T17:04:12.119730Z] > self.checkNone(cls, bitpix) [2018-01-24T17:04:12.119743Z] [2018-01-24T17:04:12.119812Z] tests/test_fitsCompression.py:352: [2018-01-24T17:04:12.119930Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.120014Z] tests/test_fitsCompression.py:342: in checkNone [2018-01-24T17:04:12.120143Z] original, unpersisted, bscale, bzero, minValue, maxValue = self.makeImage(ImageClass, scaling) [2018-01-24T17:04:12.120246Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.120259Z] [2018-01-24T17:04:12.120361Z] self = [2018-01-24T17:04:12.120442Z] ImageClass = [2018-01-24T17:04:12.120710Z] scaling = ImageScalingOptions(algorithm=u'NONE', bitpix=8, maskPlanes=[u'BAD'], seed=1, ...vel=4.000000, quantizePad=5.000000, fuzz=False, bscale=1.000000, bzero=0.000000 [2018-01-24T17:04:12.120744Z] addNoise = True [2018-01-24T17:04:12.120757Z] [2018-01-24T17:04:12.120837Z] def makeImage(self, ImageClass, scaling, addNoise=True): [2018-01-24T17:04:12.120891Z] """Make an image for testing [2018-01-24T17:04:12.120908Z] [2018-01-24T17:04:12.120996Z] We create an image, persist and unpersist it, returning [2018-01-24T17:04:12.121049Z] some data to the caller. [2018-01-24T17:04:12.121066Z] [2018-01-24T17:04:12.121103Z] Parameters [2018-01-24T17:04:12.121140Z] ---------- [2018-01-24T17:04:12.121223Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.121282Z] Class of image to create. [2018-01-24T17:04:12.121358Z] scaling : `lsst.afw.fits.ImageScalingOptions` [2018-01-24T17:04:12.121428Z] Scaling to apply during persistence. [2018-01-24T17:04:12.121474Z] addNoise : `bool` [2018-01-24T17:04:12.121526Z] Add noise to image? [2018-01-24T17:04:12.121543Z] [2018-01-24T17:04:12.121576Z] Returns [2018-01-24T17:04:12.121610Z] ------- [2018-01-24T17:04:12.121684Z] image : `lsst.afw.image.Image` (ImageClass) [2018-01-24T17:04:12.121730Z] Created image. [2018-01-24T17:04:12.121810Z] unpersisted : `lsst.afw.image.Image` (ImageClass) [2018-01-24T17:04:12.121861Z] Unpersisted image. [2018-01-24T17:04:12.121924Z] bscale, bzero : `float` [2018-01-24T17:04:12.121988Z] FITS scale factor and zero used. [2018-01-24T17:04:12.122044Z] minValue, maxValue : `float` [2018-01-24T17:04:12.122132Z] Minimum and maximum value given the nominated scaling. [2018-01-24T17:04:12.122161Z] """ [2018-01-24T17:04:12.122213Z] image = ImageClass(self.bbox) [2018-01-24T17:04:12.122274Z] mask = lsst.afw.image.Mask(self.bbox) [2018-01-24T17:04:12.122329Z] mask.addMaskPlane(self.badMask) [2018-01-24T17:04:12.122393Z] bad = mask.getPlaneBitMask(self.badMask) [2018-01-24T17:04:12.122436Z] image.set(self.base) [2018-01-24T17:04:12.122525Z] image.set(self.highPixel[0], self.highPixel[1], self.highValue) [2018-01-24T17:04:12.122611Z] image.set(self.lowPixel[0], self.lowPixel[1], self.lowValue) [2018-01-24T17:04:12.122707Z] image.set(self.maskedPixel[0], self.maskedPixel[1], self.maskedValue) [2018-01-24T17:04:12.122788Z] mask.set(self.maskedPixel[0], self.maskedPixel[1], bad) [2018-01-24T17:04:12.122804Z] [2018-01-24T17:04:12.122862Z] rng = np.random.RandomState(12345) [2018-01-24T17:04:12.122930Z] dtype = image.getArray().dtype [2018-01-24T17:04:12.122967Z] if addNoise: [2018-01-24T17:04:12.123092Z] image.getArray()[:] += rng.normal(0.0, self.stdev, image.getArray().shape).astype(dtype) [2018-01-24T17:04:12.123109Z] [2018-01-24T17:04:12.123196Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.123275Z] with lsst.afw.fits.Fits(filename, "w") as fits: [2018-01-24T17:04:12.123361Z] options = lsst.afw.fits.ImageWriteOptions(scaling) [2018-01-24T17:04:12.123433Z] header = lsst.daf.base.PropertyList() [2018-01-24T17:04:12.123513Z] image.writeFits(fits, options, header, mask) [2018-01-24T17:04:12.123577Z] > unpersisted = ImageClass(filename) [2018-01-24T17:04:12.123615Z] E FitsError: [2018-01-24T17:04:12.123790Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.124051Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testNone-7sjxmC.fits' with mode 'r' [2018-01-24T17:04:12.124107Z] E cfitsio error stack: [2018-01-24T17:04:12.124138Z] E {0} [2018-01-24T17:04:12.124427Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testNone-7sjxmC.fits' with mode 'r' [2018-01-24T17:04:12.124494Z] E cfitsio error stack: [2018-01-24T17:04:12.124539Z] E ' [2018-01-24T17:04:12.124554Z] [2018-01-24T17:04:12.124641Z] tests/test_fitsCompression.py:146: FitsError [2018-01-24T17:04:12.124769Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.124788Z] [2018-01-24T17:04:12.124900Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.125043Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.125153Z] that was used when compiling the application program: [2018-01-24T17:04:12.125244Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.125338Z] Version included by the application program = 5 [2018-01-24T17:04:12.125355Z] [2018-01-24T17:04:12.125456Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.125504Z] with the CFITSIO library. [2018-01-24T17:04:12.125650Z] _______________________ ImageScalingTestCase.testManual ________________________ [2018-01-24T17:04:12.125749Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.125762Z] [2018-01-24T17:04:12.125855Z] self = [2018-01-24T17:04:12.125868Z] [2018-01-24T17:04:12.125909Z] def testManual(self): [2018-01-24T17:04:12.126003Z] """Test that the MANUAL scaling works on floating-point inputs""" [2018-01-24T17:04:12.126090Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.126135Z] bitpixList = (16, 32) [2018-01-24T17:04:12.126224Z] for cls, bitpix in itertools.product(classList, bitpixList): [2018-01-24T17:04:12.126280Z] > self.checkNone(cls, bitpix) [2018-01-24T17:04:12.126293Z] [2018-01-24T17:04:12.126344Z] tests/test_fitsCompression.py:378: [2018-01-24T17:04:12.126445Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.126511Z] tests/test_fitsCompression.py:342: in checkNone [2018-01-24T17:04:12.126645Z] original, unpersisted, bscale, bzero, minValue, maxValue = self.makeImage(ImageClass, scaling) [2018-01-24T17:04:12.126744Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.126757Z] [2018-01-24T17:04:12.126861Z] self = [2018-01-24T17:04:12.126936Z] ImageClass = [2018-01-24T17:04:12.127161Z] scaling = ImageScalingOptions(algorithm=u'NONE', bitpix=16, maskPlanes=[u'BAD'], seed=1,...vel=4.000000, quantizePad=5.000000, fuzz=False, bscale=1.000000, bzero=0.000000 [2018-01-24T17:04:12.127189Z] addNoise = True [2018-01-24T17:04:12.127201Z] [2018-01-24T17:04:12.127273Z] def makeImage(self, ImageClass, scaling, addNoise=True): [2018-01-24T17:04:12.127322Z] """Make an image for testing [2018-01-24T17:04:12.127338Z] [2018-01-24T17:04:12.127419Z] We create an image, persist and unpersist it, returning [2018-01-24T17:04:12.127468Z] some data to the caller. [2018-01-24T17:04:12.127483Z] [2018-01-24T17:04:12.127517Z] Parameters [2018-01-24T17:04:12.127551Z] ---------- [2018-01-24T17:04:12.127642Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.127712Z] Class of image to create. [2018-01-24T17:04:12.127789Z] scaling : `lsst.afw.fits.ImageScalingOptions` [2018-01-24T17:04:12.127859Z] Scaling to apply during persistence. [2018-01-24T17:04:12.127904Z] addNoise : `bool` [2018-01-24T17:04:12.127956Z] Add noise to image? [2018-01-24T17:04:12.127986Z] [2018-01-24T17:04:12.128018Z] Returns [2018-01-24T17:04:12.128062Z] ------- [2018-01-24T17:04:12.128143Z] image : `lsst.afw.image.Image` (ImageClass) [2018-01-24T17:04:12.128201Z] Created image. [2018-01-24T17:04:12.128281Z] unpersisted : `lsst.afw.image.Image` (ImageClass) [2018-01-24T17:04:12.128332Z] Unpersisted image. [2018-01-24T17:04:12.128384Z] bscale, bzero : `float` [2018-01-24T17:04:12.128450Z] FITS scale factor and zero used. [2018-01-24T17:04:12.128520Z] minValue, maxValue : `float` [2018-01-24T17:04:12.128611Z] Minimum and maximum value given the nominated scaling. [2018-01-24T17:04:12.128653Z] """ [2018-01-24T17:04:12.128721Z] image = ImageClass(self.bbox) [2018-01-24T17:04:12.128811Z] mask = lsst.afw.image.Mask(self.bbox) [2018-01-24T17:04:12.128872Z] mask.addMaskPlane(self.badMask) [2018-01-24T17:04:12.128947Z] bad = mask.getPlaneBitMask(self.badMask) [2018-01-24T17:04:12.128996Z] image.set(self.base) [2018-01-24T17:04:12.129101Z] image.set(self.highPixel[0], self.highPixel[1], self.highValue) [2018-01-24T17:04:12.129190Z] image.set(self.lowPixel[0], self.lowPixel[1], self.lowValue) [2018-01-24T17:04:12.129289Z] image.set(self.maskedPixel[0], self.maskedPixel[1], self.maskedValue) [2018-01-24T17:04:12.129373Z] mask.set(self.maskedPixel[0], self.maskedPixel[1], bad) [2018-01-24T17:04:12.129390Z] [2018-01-24T17:04:12.129450Z] rng = np.random.RandomState(12345) [2018-01-24T17:04:12.129506Z] dtype = image.getArray().dtype [2018-01-24T17:04:12.129541Z] if addNoise: [2018-01-24T17:04:12.129666Z] image.getArray()[:] += rng.normal(0.0, self.stdev, image.getArray().shape).astype(dtype) [2018-01-24T17:04:12.129683Z] [2018-01-24T17:04:12.129771Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.129850Z] with lsst.afw.fits.Fits(filename, "w") as fits: [2018-01-24T17:04:12.129961Z] options = lsst.afw.fits.ImageWriteOptions(scaling) [2018-01-24T17:04:12.130033Z] header = lsst.daf.base.PropertyList() [2018-01-24T17:04:12.130113Z] image.writeFits(fits, options, header, mask) [2018-01-24T17:04:12.130177Z] > unpersisted = ImageClass(filename) [2018-01-24T17:04:12.130216Z] E FitsError: [2018-01-24T17:04:12.130366Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.130587Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testManual-FqHM05.fits' with mode 'r' [2018-01-24T17:04:12.130637Z] E cfitsio error stack: [2018-01-24T17:04:12.130668Z] E {0} [2018-01-24T17:04:12.130917Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testManual-FqHM05.fits' with mode 'r' [2018-01-24T17:04:12.130968Z] E cfitsio error stack: [2018-01-24T17:04:12.130995Z] E ' [2018-01-24T17:04:12.131008Z] [2018-01-24T17:04:12.131082Z] tests/test_fitsCompression.py:146: FitsError [2018-01-24T17:04:12.131182Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.131194Z] [2018-01-24T17:04:12.131285Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.131380Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.131451Z] that was used when compiling the application program: [2018-01-24T17:04:12.131518Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.131584Z] Version included by the application program = 5 [2018-01-24T17:04:12.131596Z] [2018-01-24T17:04:12.131682Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.131723Z] with the CFITSIO library. [2018-01-24T17:04:12.131822Z] _________________________ ExposureTestCase.testGetWcs __________________________ [2018-01-24T17:04:12.131915Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.131927Z] [2018-01-24T17:04:12.132007Z] self = [2018-01-24T17:04:12.132020Z] [2018-01-24T17:04:12.132054Z] def setUp(self): [2018-01-24T17:04:12.132134Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.132181Z] E FitsError: [2018-01-24T17:04:12.132381Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.132582Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.132639Z] E cfitsio error stack: [2018-01-24T17:04:12.132665Z] E {0} [2018-01-24T17:04:12.132882Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.132968Z] E cfitsio error stack: [2018-01-24T17:04:12.132995Z] E ' [2018-01-24T17:04:12.133008Z] [2018-01-24T17:04:12.133061Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.133163Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.133177Z] [2018-01-24T17:04:12.133282Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.133392Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.133464Z] that was used when compiling the application program: [2018-01-24T17:04:12.133534Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.133603Z] Version included by the application program = 5 [2018-01-24T17:04:12.133616Z] [2018-01-24T17:04:12.133704Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.133746Z] with the CFITSIO library. [2018-01-24T17:04:12.133848Z] ____________________ FootprintTestCase.testLegacyFootprints ____________________ [2018-01-24T17:04:12.133943Z] [gw5] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.133955Z] [2018-01-24T17:04:12.134050Z] self = [2018-01-24T17:04:12.134062Z] [2018-01-24T17:04:12.134114Z] def testLegacyFootprints(self): [2018-01-24T17:04:12.134191Z] fileName = 'tests/data/preSpanSetsFootprint.fits' [2018-01-24T17:04:12.134284Z] > legacyFootprint = afwDet.Footprint.readFits(fileName) [2018-01-24T17:04:12.134316Z] E FitsError: [2018-01-24T17:04:12.134458Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.134613Z] E cfitsio error: could not open the named file (104) : Opening file 'tests/data/preSpanSetsFootprint.fits' with mode 'r' [2018-01-24T17:04:12.134657Z] E cfitsio error stack: [2018-01-24T17:04:12.134683Z] E {0} [2018-01-24T17:04:12.134865Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file 'tests/data/preSpanSetsFootprint.fits' with mode 'r' [2018-01-24T17:04:12.134909Z] E cfitsio error stack: [2018-01-24T17:04:12.134931Z] E ' [2018-01-24T17:04:12.134943Z] [2018-01-24T17:04:12.134996Z] tests/test_footprint.py:254: FitsError [2018-01-24T17:04:12.135096Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.135108Z] [2018-01-24T17:04:12.135198Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.135294Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.135380Z] that was used when compiling the application program: [2018-01-24T17:04:12.135480Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.135567Z] Version included by the application program = 5 [2018-01-24T17:04:12.135588Z] [2018-01-24T17:04:12.135689Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.135735Z] with the CFITSIO library. [2018-01-24T17:04:12.135844Z] _____________________ ExposureTestCase.testGetMaskedImage ______________________ [2018-01-24T17:04:12.135943Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.135956Z] [2018-01-24T17:04:12.136043Z] self = [2018-01-24T17:04:12.136055Z] [2018-01-24T17:04:12.136090Z] def setUp(self): [2018-01-24T17:04:12.136167Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.136200Z] E FitsError: [2018-01-24T17:04:12.136339Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.136528Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.136572Z] E cfitsio error stack: [2018-01-24T17:04:12.136597Z] E {0} [2018-01-24T17:04:12.136812Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.136856Z] E cfitsio error stack: [2018-01-24T17:04:12.136878Z] E ' [2018-01-24T17:04:12.136890Z] [2018-01-24T17:04:12.136941Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.137040Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.137052Z] [2018-01-24T17:04:12.137142Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.137251Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.137323Z] that was used when compiling the application program: [2018-01-24T17:04:12.137391Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.137460Z] Version included by the application program = 5 [2018-01-24T17:04:12.137472Z] [2018-01-24T17:04:12.137560Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.137600Z] with the CFITSIO library. [2018-01-24T17:04:12.138946Z] _______________________ DecoratedImageTestCase.testDM882 _______________________ [2018-01-24T17:04:12.139072Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.139090Z] [2018-01-24T17:04:12.139206Z] self = [2018-01-24T17:04:12.139223Z] [2018-01-24T17:04:12.139263Z] def testDM882(self): [2018-01-24T17:04:12.139381Z] """Test that we can write a dotted header unit to a FITS file. See DM-882.""" [2018-01-24T17:04:12.139476Z] self.dimage1.getMetadata().add("A.B.C.D", 12345) [2018-01-24T17:04:12.139533Z] tempdir = tempfile.mkdtemp() [2018-01-24T17:04:12.139603Z] testfile = os.path.join(tempdir, "test.fits") [2018-01-24T17:04:12.139628Z] try: [2018-01-24T17:04:12.139688Z] self.dimage1.writeFits(testfile) [2018-01-24T17:04:12.139755Z] > meta = afwImage.readMetadata(testfile) [2018-01-24T17:04:12.139792Z] E FitsError: [2018-01-24T17:04:12.139937Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.140146Z] E cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpdIzRxp/test.fits' with mode 'r' [2018-01-24T17:04:12.140197Z] E cfitsio error stack: [2018-01-24T17:04:12.140228Z] E {0} [2018-01-24T17:04:12.140465Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpdIzRxp/test.fits' with mode 'r' [2018-01-24T17:04:12.140513Z] E cfitsio error stack: [2018-01-24T17:04:12.140540Z] E ' [2018-01-24T17:04:12.140552Z] [2018-01-24T17:04:12.140601Z] tests/test_image.py:782: FitsError [2018-01-24T17:04:12.140700Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.140712Z] [2018-01-24T17:04:12.140802Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.140898Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.140967Z] that was used when compiling the application program: [2018-01-24T17:04:12.141034Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.141100Z] Version included by the application program = 5 [2018-01-24T17:04:12.141112Z] [2018-01-24T17:04:12.141198Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.141237Z] with the CFITSIO library. [2018-01-24T17:04:12.142542Z] _____________________ ExposureTestCase.testGetSubExposure ______________________ [2018-01-24T17:04:12.142704Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.142729Z] [2018-01-24T17:04:12.142838Z] self = [2018-01-24T17:04:12.142866Z] [2018-01-24T17:04:12.142904Z] def setUp(self): [2018-01-24T17:04:12.142986Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.143021Z] E FitsError: [2018-01-24T17:04:12.143186Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.143366Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.143409Z] E cfitsio error stack: [2018-01-24T17:04:12.143434Z] E {0} [2018-01-24T17:04:12.143673Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.143719Z] E cfitsio error stack: [2018-01-24T17:04:12.143742Z] E ' [2018-01-24T17:04:12.143755Z] [2018-01-24T17:04:12.143807Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.143922Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.143934Z] [2018-01-24T17:04:12.144025Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.144121Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.144191Z] that was used when compiling the application program: [2018-01-24T17:04:12.144258Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.144325Z] Version included by the application program = 5 [2018-01-24T17:04:12.144337Z] [2018-01-24T17:04:12.144423Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.144477Z] with the CFITSIO library. [2018-01-24T17:04:12.146071Z] ______________________ FootprintTestCase.testPersistence _______________________ [2018-01-24T17:04:12.146206Z] [gw5] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.146230Z] [2018-01-24T17:04:12.146334Z] self = [2018-01-24T17:04:12.146357Z] [2018-01-24T17:04:12.146420Z] def testPersistence(self): [2018-01-24T17:04:12.146490Z] # populate the peaks for the peak tests [2018-01-24T17:04:12.146543Z] self.testPeakFunctionality() [2018-01-24T17:04:12.146560Z] [2018-01-24T17:04:12.146625Z] with tempfile.NamedTemporaryFile() as f: [2018-01-24T17:04:12.146705Z] # Persist the Footprint to file and read it back [2018-01-24T17:04:12.146765Z] self.footprint.writeFits(f.name) [2018-01-24T17:04:12.146849Z] > footprintFromFile = afwDet.Footprint.readFits(f.name) [2018-01-24T17:04:12.146886Z] E FitsError: [2018-01-24T17:04:12.147032Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.147215Z] E cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpe1NmjW' with mode 'r' [2018-01-24T17:04:12.147264Z] E cfitsio error stack: [2018-01-24T17:04:12.147294Z] E {0} [2018-01-24T17:04:12.147505Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpe1NmjW' with mode 'r' [2018-01-24T17:04:12.147553Z] E cfitsio error stack: [2018-01-24T17:04:12.147580Z] E ' [2018-01-24T17:04:12.147593Z] [2018-01-24T17:04:12.147647Z] tests/test_footprint.py:244: FitsError [2018-01-24T17:04:12.147746Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.147759Z] [2018-01-24T17:04:12.147849Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.147946Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.148016Z] that was used when compiling the application program: [2018-01-24T17:04:12.148082Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.148149Z] Version included by the application program = 5 [2018-01-24T17:04:12.148162Z] [2018-01-24T17:04:12.148248Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.148287Z] with the CFITSIO library. [2018-01-24T17:04:12.149636Z] ___________________ ImageCompressionTestCase.testLosslessInt ___________________ [2018-01-24T17:04:12.149749Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.149764Z] [2018-01-24T17:04:12.149900Z] self = [2018-01-24T17:04:12.149918Z] [2018-01-24T17:04:12.149987Z] def testLosslessInt(self): [2018-01-24T17:04:12.150072Z] """Test lossless compression of integer image [2018-01-24T17:04:12.150090Z] [2018-01-24T17:04:12.150195Z] We deliberately don't test `lsst.afw.image.ImageL` because [2018-01-24T17:04:12.150298Z] compression of LONGLONG images is unsupported by cfitsio. [2018-01-24T17:04:12.150329Z] """ [2018-01-24T17:04:12.150418Z] classList = (lsst.afw.image.ImageU, lsst.afw.image.ImageI) [2018-01-24T17:04:12.150495Z] algorithmList = ("GZIP", "GZIP_SHUFFLE", "RICE") [2018-01-24T17:04:12.150617Z] for cls, algorithm in itertools.product(classList, algorithmList): [2018-01-24T17:04:12.150779Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm)) [2018-01-24T17:04:12.150869Z] image = self.makeImage(cls) [2018-01-24T17:04:12.150969Z] > self.checkCompressedImage(cls, image, compression, atol=0.0) [2018-01-24T17:04:12.150982Z] [2018-01-24T17:04:12.151033Z] tests/test_fitsCompression.py:525: [2018-01-24T17:04:12.151132Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.151207Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.151301Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.151400Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.151413Z] [2018-01-24T17:04:12.151512Z] self = [2018-01-24T17:04:12.151586Z] ImageClass = [2018-01-24T17:04:12.151668Z] image = [2018-01-24T17:04:12.151821Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessInt-FC7BMC.ImageCompressionTestCase.fits' [2018-01-24T17:04:12.152033Z] options = ImageWriteOptions(compression=ImageCompressionOptions(algorithm=u'GZIP', tiles...uantizeLevel=4.000000, quantizePad=5.000000, fuzz=False, bscale=nan, bzero=nan) [2018-01-24T17:04:12.152057Z] args = () [2018-01-24T17:04:12.152071Z] [2018-01-24T17:04:12.152166Z] def readWriteImage(self, ImageClass, image, filename, options, *args): [2018-01-24T17:04:12.152236Z] """Read the image after it has been written [2018-01-24T17:04:12.152253Z] [2018-01-24T17:04:12.152347Z] This implementation does the persistence using methods on the [2018-01-24T17:04:12.152386Z] ImageClass. [2018-01-24T17:04:12.152403Z] [2018-01-24T17:04:12.152440Z] Parameters [2018-01-24T17:04:12.152477Z] ---------- [2018-01-24T17:04:12.152561Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.152619Z] Class of image to create. [2018-01-24T17:04:12.152691Z] image : `lsst.afw.image.Image` [2018-01-24T17:04:12.152780Z] Image to compress. [2018-01-24T17:04:12.152828Z] filename : `str` [2018-01-24T17:04:12.152889Z] Filename to which to write. [2018-01-24T17:04:12.152963Z] options : `lsst.afw.fits.ImageWriteOptions` [2018-01-24T17:04:12.153016Z] Options for writing. [2018-01-24T17:04:12.153046Z] """ [2018-01-24T17:04:12.153127Z] image.writeFits(filename, options, *args) [2018-01-24T17:04:12.153177Z] > return ImageClass(filename) [2018-01-24T17:04:12.153210Z] E FitsError: [2018-01-24T17:04:12.153351Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.153592Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessInt-FC7BMC.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.153637Z] E cfitsio error stack: [2018-01-24T17:04:12.153662Z] E {0} [2018-01-24T17:04:12.153930Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessInt-FC7BMC.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.153985Z] E cfitsio error stack: [2018-01-24T17:04:12.154047Z] E ' [2018-01-24T17:04:12.154088Z] [2018-01-24T17:04:12.154155Z] tests/test_fitsCompression.py:423: FitsError [2018-01-24T17:04:12.154261Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.154274Z] [2018-01-24T17:04:12.154382Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.154560Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.154649Z] that was used when compiling the application program: [2018-01-24T17:04:12.154720Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.154789Z] Version included by the application program = 5 [2018-01-24T17:04:12.154803Z] [2018-01-24T17:04:12.154893Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.154934Z] with the CFITSIO library. [2018-01-24T17:04:12.155036Z] _____________________ DecoratedImageTestCase.testReadFits ______________________ [2018-01-24T17:04:12.155131Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.155143Z] [2018-01-24T17:04:12.155230Z] self = [2018-01-24T17:04:12.155243Z] [2018-01-24T17:04:12.155323Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.155366Z] def testReadFits(self): [2018-01-24T17:04:12.155421Z] """Test reading FITS files""" [2018-01-24T17:04:12.155439Z] [2018-01-24T17:04:12.155470Z] hdus = {} [2018-01-24T17:04:12.155530Z] hdus["img"] = 1 # an S16 fits HDU [2018-01-24T17:04:12.155589Z] hdus["msk"] = 2 # an U8 fits HDU [2018-01-24T17:04:12.155648Z] hdus["var"] = 3 # an F32 fits HDU [2018-01-24T17:04:12.155665Z] [2018-01-24T17:04:12.155713Z] # read as unsigned short [2018-01-24T17:04:12.155808Z] > imgU = afwImage.DecoratedImageU(self.fileForMetadata, hdus["img"]) [2018-01-24T17:04:12.155842Z] E FitsError: [2018-01-24T17:04:12.155987Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.156191Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.156235Z] E cfitsio error stack: [2018-01-24T17:04:12.156261Z] E {0} [2018-01-24T17:04:12.156478Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.156522Z] E cfitsio error stack: [2018-01-24T17:04:12.156544Z] E ' [2018-01-24T17:04:12.156556Z] [2018-01-24T17:04:12.156605Z] tests/test_image.py:669: FitsError [2018-01-24T17:04:12.156704Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.156716Z] [2018-01-24T17:04:12.156807Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.156903Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.156973Z] that was used when compiling the application program: [2018-01-24T17:04:12.157040Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.157107Z] Version included by the application program = 5 [2018-01-24T17:04:12.157120Z] [2018-01-24T17:04:12.157205Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.157245Z] with the CFITSIO library. [2018-01-24T17:04:12.157775Z] ___________________ ImageCompressionTestCase.testMaskedImage ___________________ [2018-01-24T17:04:12.157884Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.157898Z] [2018-01-24T17:04:12.158021Z] self = [2018-01-24T17:04:12.158051Z] [2018-01-24T17:04:12.158111Z] def testMaskedImage(self): [2018-01-24T17:04:12.158171Z] """Test compression of MaskedImage [2018-01-24T17:04:12.158188Z] [2018-01-24T17:04:12.158299Z] We test lossless, lossy cfitsio and lossy LSST compression. [2018-01-24T17:04:12.158336Z] """ [2018-01-24T17:04:12.158369Z] # Lossless [2018-01-24T17:04:12.158496Z] lossless = lsst.afw.fits.ImageCompressionOptions(ImageCompressionOptions.GZIP_SHUFFLE) [2018-01-24T17:04:12.158611Z] options = lsst.afw.fits.ImageWriteOptions(lossless) [2018-01-24T17:04:12.158756Z] > self.checkMaskedImage(options, options, options, atol=0.0) [2018-01-24T17:04:12.158774Z] [2018-01-24T17:04:12.158837Z] tests/test_fitsCompression.py:665: [2018-01-24T17:04:12.158973Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.159066Z] tests/test_fitsCompression.py:653: in checkMaskedImage [2018-01-24T17:04:12.159192Z] self.checkCompressedMaskedImage(image, imageOptions, maskOptions, varianceOptions, atol=atol) [2018-01-24T17:04:12.159275Z] tests/test_fitsCompression.py:626: in checkCompressedMaskedImage [2018-01-24T17:04:12.159399Z] self.readWriteMaskedImage(image, filename, imageOptions, maskOptions, varianceOptions) [2018-01-24T17:04:12.159502Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.159515Z] [2018-01-24T17:04:12.159618Z] self = [2018-01-24T17:04:12.159736Z] image = [2018-01-24T17:04:12.159890Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMaskedImage-t49aCH.ImageCompressionTestCase.fits' [2018-01-24T17:04:12.160095Z] imageOptions = ImageWriteOptions(compression=ImageCompressionOptions(algorithm=u'GZIP_SHUFFLE...uantizeLevel=4.000000, quantizePad=5.000000, fuzz=False, bscale=nan, bzero=nan) [2018-01-24T17:04:12.160300Z] maskOptions = ImageWriteOptions(compression=ImageCompressionOptions(algorithm=u'GZIP_SHUFFLE...uantizeLevel=4.000000, quantizePad=5.000000, fuzz=False, bscale=nan, bzero=nan) [2018-01-24T17:04:12.160509Z] varianceOptions = ImageWriteOptions(compression=ImageCompressionOptions(algorithm=u'GZIP_SHUFFLE...uantizeLevel=4.000000, quantizePad=5.000000, fuzz=False, bscale=nan, bzero=nan) [2018-01-24T17:04:12.160522Z] [2018-01-24T17:04:12.160639Z] def readWriteMaskedImage(self, image, filename, imageOptions, maskOptions, varianceOptions): [2018-01-24T17:04:12.160714Z] """Read the MaskedImage after it has been written [2018-01-24T17:04:12.160757Z] [2018-01-24T17:04:12.160852Z] This implementation does the persistence using methods on the [2018-01-24T17:04:12.160898Z] MaskedImage class. [2018-01-24T17:04:12.160915Z] [2018-01-24T17:04:12.160951Z] Parameters [2018-01-24T17:04:12.160988Z] ---------- [2018-01-24T17:04:12.161046Z] image : `lsst.afw.image.Image` [2018-01-24T17:04:12.161095Z] Image to compress. [2018-01-24T17:04:12.161138Z] filename : `str` [2018-01-24T17:04:12.161198Z] Filename to which to write. [2018-01-24T17:04:12.161309Z] imageOptions, maskOptions, varianceOptions : `lsst.afw.fits.ImageWriteOptions` [2018-01-24T17:04:12.161400Z] Options for writing the image, mask and variance planes. [2018-01-24T17:04:12.161428Z] """ [2018-01-24T17:04:12.161525Z] image.writeFits(filename, imageOptions, maskOptions, varianceOptions) [2018-01-24T17:04:12.161585Z] if hasattr(image, "getMaskedImage"): [2018-01-24T17:04:12.161643Z] image = image.getMaskedImage() [2018-01-24T17:04:12.161712Z] > return lsst.afw.image.MaskedImageF(filename) [2018-01-24T17:04:12.161745Z] E FitsError: [2018-01-24T17:04:12.161886Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.162130Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMaskedImage-t49aCH.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.162175Z] E cfitsio error stack: [2018-01-24T17:04:12.162214Z] E {0} [2018-01-24T17:04:12.162550Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMaskedImage-t49aCH.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.162611Z] E cfitsio error stack: [2018-01-24T17:04:12.162636Z] E ' [2018-01-24T17:04:12.162650Z] [2018-01-24T17:04:12.162725Z] tests/test_fitsCompression.py:610: FitsError [2018-01-24T17:04:12.162835Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.162849Z] [2018-01-24T17:04:12.162942Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.163053Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.163123Z] that was used when compiling the application program: [2018-01-24T17:04:12.163190Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.163257Z] Version included by the application program = 5 [2018-01-24T17:04:12.163269Z] [2018-01-24T17:04:12.163356Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.163397Z] with the CFITSIO library. [2018-01-24T17:04:12.163496Z] ___________________ DecoratedImageTestCase.testReadMetadata ____________________ [2018-01-24T17:04:12.163601Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.163614Z] [2018-01-24T17:04:12.163705Z] self = [2018-01-24T17:04:12.163718Z] [2018-01-24T17:04:12.163799Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.163846Z] def testReadMetadata(self): [2018-01-24T17:04:12.163925Z] > im = afwImage.DecoratedImageF(self.fileForMetadata) [2018-01-24T17:04:12.163959Z] E FitsError: [2018-01-24T17:04:12.164104Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.164301Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.164347Z] E cfitsio error stack: [2018-01-24T17:04:12.164373Z] E {0} [2018-01-24T17:04:12.164597Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.164641Z] E cfitsio error stack: [2018-01-24T17:04:12.164664Z] E ' [2018-01-24T17:04:12.164677Z] [2018-01-24T17:04:12.164728Z] tests/test_image.py:753: FitsError [2018-01-24T17:04:12.164841Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.164853Z] [2018-01-24T17:04:12.164943Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.165040Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.165110Z] that was used when compiling the application program: [2018-01-24T17:04:12.165177Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.165244Z] Version included by the application program = 5 [2018-01-24T17:04:12.165256Z] [2018-01-24T17:04:12.165342Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.165381Z] with the CFITSIO library. [2018-01-24T17:04:12.165863Z] ____________________ ExposureTableTestCase.testCoaddInputs _____________________ [2018-01-24T17:04:12.165998Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.166017Z] [2018-01-24T17:04:12.166138Z] self = [2018-01-24T17:04:12.166170Z] [2018-01-24T17:04:12.166232Z] def testCoaddInputs(self): [2018-01-24T17:04:12.166313Z] coaddInputs = lsst.afw.image.CoaddInputs( [2018-01-24T17:04:12.166418Z] lsst.afw.table.ExposureTable.makeMinimalSchema(), [2018-01-24T17:04:12.166502Z] lsst.afw.table.ExposureTable.makeMinimalSchema() [2018-01-24T17:04:12.166525Z] ) [2018-01-24T17:04:12.166585Z] coaddInputs.visits.addNew().setId(2) [2018-01-24T17:04:12.166657Z] coaddInputs.ccds.addNew().setId(3) [2018-01-24T17:04:12.166716Z] coaddInputs.ccds.addNew().setId(4) [2018-01-24T17:04:12.166788Z] exposureIn = lsst.afw.image.ExposureF(10, 10) [2018-01-24T17:04:12.166863Z] exposureIn.getInfo().setCoaddInputs(coaddInputs) [2018-01-24T17:04:12.166951Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.167022Z] exposureIn.writeFits(filename) [2018-01-24T17:04:12.167099Z] > exposureOut = lsst.afw.image.ExposureF(filename) [2018-01-24T17:04:12.167136Z] E FitsError: [2018-01-24T17:04:12.167294Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.167518Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_exposureTable_testCoaddInputs-AfeajI.fits' with mode 'r' [2018-01-24T17:04:12.167568Z] E cfitsio error stack: [2018-01-24T17:04:12.167612Z] E {0} [2018-01-24T17:04:12.167874Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_exposureTable_testCoaddInputs-AfeajI.fits' with mode 'r' [2018-01-24T17:04:12.167926Z] E cfitsio error stack: [2018-01-24T17:04:12.167953Z] E ' [2018-01-24T17:04:12.167966Z] [2018-01-24T17:04:12.168037Z] tests/test_exposureTable.py:239: FitsError [2018-01-24T17:04:12.168136Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.168148Z] [2018-01-24T17:04:12.168238Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.168334Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.168403Z] that was used when compiling the application program: [2018-01-24T17:04:12.168470Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.168563Z] Version included by the application program = 5 [2018-01-24T17:04:12.168579Z] [2018-01-24T17:04:12.168666Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.168706Z] with the CFITSIO library. [2018-01-24T17:04:12.169526Z] ______________________ ExposureTestCase.testDeepCopyData _______________________ [2018-01-24T17:04:12.169648Z] [gw11] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.169671Z] [2018-01-24T17:04:12.169793Z] self = [2018-01-24T17:04:12.169810Z] [2018-01-24T17:04:12.169846Z] def setUp(self): [2018-01-24T17:04:12.169933Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.169974Z] E FitsError: [2018-01-24T17:04:12.170115Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.170305Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.170350Z] E cfitsio error stack: [2018-01-24T17:04:12.170375Z] E {0} [2018-01-24T17:04:12.170591Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.170635Z] E cfitsio error stack: [2018-01-24T17:04:12.170658Z] E ' [2018-01-24T17:04:12.170670Z] [2018-01-24T17:04:12.170721Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.170820Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.170832Z] [2018-01-24T17:04:12.170922Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.171018Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.171088Z] that was used when compiling the application program: [2018-01-24T17:04:12.171155Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.171222Z] Version included by the application program = 5 [2018-01-24T17:04:12.171235Z] [2018-01-24T17:04:12.171320Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.171360Z] with the CFITSIO library. [2018-01-24T17:04:12.172990Z] _____________________ ExposureTestCase.testSetExposureInfo _____________________ [2018-01-24T17:04:12.173118Z] [gw11] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.173137Z] [2018-01-24T17:04:12.173258Z] self = [2018-01-24T17:04:12.173273Z] [2018-01-24T17:04:12.173321Z] def setUp(self): [2018-01-24T17:04:12.173420Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.173455Z] E FitsError: [2018-01-24T17:04:12.173610Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.173805Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.173851Z] E cfitsio error stack: [2018-01-24T17:04:12.173890Z] E {0} [2018-01-24T17:04:12.174106Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.174150Z] E cfitsio error stack: [2018-01-24T17:04:12.174172Z] E ' [2018-01-24T17:04:12.174184Z] [2018-01-24T17:04:12.174235Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.174334Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.174346Z] [2018-01-24T17:04:12.174436Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.174531Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.174601Z] that was used when compiling the application program: [2018-01-24T17:04:12.174668Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.174734Z] Version included by the application program = 5 [2018-01-24T17:04:12.174746Z] [2018-01-24T17:04:12.174832Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.174871Z] with the CFITSIO library. [2018-01-24T17:04:12.176462Z] ________________ ImageCompressionTestCase.testLossyFloatCfitsio ________________ [2018-01-24T17:04:12.176593Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.176608Z] [2018-01-24T17:04:12.176734Z] self = [2018-01-24T17:04:12.176747Z] [2018-01-24T17:04:12.176824Z] def testLossyFloatCfitsio(self): [2018-01-24T17:04:12.176957Z] """Test lossy compresion of floating-point images with cfitsio [2018-01-24T17:04:12.176986Z] [2018-01-24T17:04:12.177090Z] cfitsio does the compression, controlled through the 'quantizeLevel' [2018-01-24T17:04:12.177219Z] parameter. Note that cfitsio doesn't have access to our masks when [2018-01-24T17:04:12.177281Z] it does its statistics. [2018-01-24T17:04:12.177312Z] """ [2018-01-24T17:04:12.177398Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.177507Z] algorithmList = ("GZIP", "GZIP_SHUFFLE", "RICE") [2018-01-24T17:04:12.177568Z] quantizeList = (4.0, 10.0) [2018-01-24T17:04:12.177706Z] for cls, algorithm, quantizeLevel in itertools.product(classList, algorithmList, quantizeList): [2018-01-24T17:04:12.177886Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm), [2018-01-24T17:04:12.177995Z] quantizeLevel=quantizeLevel) [2018-01-24T17:04:12.178053Z] image = self.makeImage(cls) [2018-01-24T17:04:12.178181Z] > self.checkCompressedImage(cls, image, compression, atol=self.noise/quantizeLevel) [2018-01-24T17:04:12.178193Z] [2018-01-24T17:04:12.178243Z] tests/test_fitsCompression.py:570: [2018-01-24T17:04:12.178343Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.178432Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.178528Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.178630Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.178643Z] [2018-01-24T17:04:12.178762Z] self = [2018-01-24T17:04:12.178835Z] ImageClass = [2018-01-24T17:04:12.178918Z] image = [2018-01-24T17:04:12.179077Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatCfitsio-Jz995Q.ImageCompressionTestCase.fits' [2018-01-24T17:04:12.179294Z] options = ImageWriteOptions(compression=ImageCompressionOptions(algorithm=u'GZIP', tiles...uantizeLevel=4.000000, quantizePad=5.000000, fuzz=False, bscale=nan, bzero=nan) [2018-01-24T17:04:12.179318Z] args = () [2018-01-24T17:04:12.179331Z] [2018-01-24T17:04:12.179426Z] def readWriteImage(self, ImageClass, image, filename, options, *args): [2018-01-24T17:04:12.179507Z] """Read the image after it has been written [2018-01-24T17:04:12.179524Z] [2018-01-24T17:04:12.179615Z] This implementation does the persistence using methods on the [2018-01-24T17:04:12.179652Z] ImageClass. [2018-01-24T17:04:12.179668Z] [2018-01-24T17:04:12.179704Z] Parameters [2018-01-24T17:04:12.179766Z] ---------- [2018-01-24T17:04:12.179852Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.179910Z] Class of image to create. [2018-01-24T17:04:12.179968Z] image : `lsst.afw.image.Image` [2018-01-24T17:04:12.180017Z] Image to compress. [2018-01-24T17:04:12.180061Z] filename : `str` [2018-01-24T17:04:12.180120Z] Filename to which to write. [2018-01-24T17:04:12.180192Z] options : `lsst.afw.fits.ImageWriteOptions` [2018-01-24T17:04:12.180243Z] Options for writing. [2018-01-24T17:04:12.180273Z] """ [2018-01-24T17:04:12.180338Z] image.writeFits(filename, options, *args) [2018-01-24T17:04:12.180403Z] > return ImageClass(filename) [2018-01-24T17:04:12.180437Z] E FitsError: [2018-01-24T17:04:12.180582Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.180837Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatCfitsio-Jz995Q.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.180883Z] E cfitsio error stack: [2018-01-24T17:04:12.180909Z] E {0} [2018-01-24T17:04:12.181250Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatCfitsio-Jz995Q.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.181308Z] E cfitsio error stack: [2018-01-24T17:04:12.181333Z] E ' [2018-01-24T17:04:12.181346Z] [2018-01-24T17:04:12.181431Z] tests/test_fitsCompression.py:423: FitsError [2018-01-24T17:04:12.181561Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.181587Z] [2018-01-24T17:04:12.181696Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.181806Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.181885Z] that was used when compiling the application program: [2018-01-24T17:04:12.181953Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.182020Z] Version included by the application program = 5 [2018-01-24T17:04:12.182033Z] [2018-01-24T17:04:12.182119Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.182159Z] with the CFITSIO library. [2018-01-24T17:04:12.182259Z] ________________________ HeavyFootprintTestCase.testDot ________________________ [2018-01-24T17:04:12.182352Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.182365Z] [2018-01-24T17:04:12.182454Z] self = [2018-01-24T17:04:12.182467Z] [2018-01-24T17:04:12.182503Z] def testDot(self): [2018-01-24T17:04:12.182557Z] """Test HeavyFootprint::dot""" [2018-01-24T17:04:12.182592Z] size = 20, 20 [2018-01-24T17:04:12.182676Z] for xOffset, yOffset in [(0, 0), (0, 3), (3, 0), (2, 2)]: [2018-01-24T17:04:12.182739Z] mi1 = afwImage.MaskedImageF(*size) [2018-01-24T17:04:12.182802Z] mi2 = afwImage.MaskedImageF(*size) [2018-01-24T17:04:12.182839Z] mi1.set(0) [2018-01-24T17:04:12.182875Z] mi2.set(0) [2018-01-24T17:04:12.182892Z] [2018-01-24T17:04:12.182932Z] spanList1 = [] [2018-01-24T17:04:12.182974Z] spanList2 = [] [2018-01-24T17:04:12.183030Z] for y, x0, x1 in [(5, 3, 7), [2018-01-24T17:04:12.183086Z] (6, 3, 4), [2018-01-24T17:04:12.183142Z] (6, 6, 7), [2018-01-24T17:04:12.183201Z] (7, 3, 7), ]: [2018-01-24T17:04:12.183276Z] spanList1.append(afwGeom.Span(y, x0, x1)) [2018-01-24T17:04:12.183367Z] spanList2.append(afwGeom.Span(y + yOffset, x0 + xOffset, [2018-01-24T17:04:12.183445Z] x1 + xOffset)) [2018-01-24T17:04:12.183504Z] for x in range(x0, x1 + 1): [2018-01-24T17:04:12.183563Z] value = (x + y, 0, 1.0) [2018-01-24T17:04:12.183619Z] mi1.set(x, y, value) [2018-01-24T17:04:12.183697Z] mi2.set(x + xOffset, y + yOffset, value) [2018-01-24T17:04:12.183715Z] [2018-01-24T17:04:12.183799Z] fp1 = afwDetect.Footprint(afwGeom.SpanSet(spanList1)) [2018-01-24T17:04:12.183882Z] fp2 = afwDetect.Footprint(afwGeom.SpanSet(spanList2)) [2018-01-24T17:04:12.183899Z] [2018-01-24T17:04:12.183973Z] hfp1 = afwDetect.makeHeavyFootprint(fp1, mi1) [2018-01-24T17:04:12.184048Z] hfp2 = afwDetect.makeHeavyFootprint(fp2, mi2) [2018-01-24T17:04:12.184065Z] [2018-01-24T17:04:12.184163Z] dot = np.vdot(mi1.getImage().getArray(), mi2.getImage().getArray()) [2018-01-24T17:04:12.184229Z] > self.assertEqual(hfp1.dot(hfp2), dot) [2018-01-24T17:04:12.184286Z] E AssertionError: 1734.0 != 0.0 [2018-01-24T17:04:12.184298Z] [2018-01-24T17:04:12.184363Z] tests/test_heavyFootprint.py:302: AssertionError [2018-01-24T17:04:12.184785Z] __________________________ FootprintTestCase.testEdge __________________________ [2018-01-24T17:04:12.184910Z] [gw5] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.184948Z] [2018-01-24T17:04:12.185055Z] self = [2018-01-24T17:04:12.185072Z] [2018-01-24T17:04:12.185111Z] def testEdge(self): [2018-01-24T17:04:12.185194Z] """Test for Footprint::findEdgePixels()""" [2018-01-24T17:04:12.185255Z] foot = afwDetect.Footprint() [2018-01-24T17:04:12.185383Z] spanList = [afwGeom.Span(*span) for span in ((3, 3, 9), [2018-01-24T17:04:12.185474Z] (4, 2, 4), [2018-01-24T17:04:12.185567Z] (4, 6, 7), [2018-01-24T17:04:12.185654Z] (4, 9, 11), [2018-01-24T17:04:12.185736Z] (5, 3, 9), [2018-01-24T17:04:12.185818Z] (6, 6, 7))] [2018-01-24T17:04:12.185881Z] foot.spans = afwGeom.SpanSet(spanList) [2018-01-24T17:04:12.185924Z] self.checkEdge(foot) [2018-01-24T17:04:12.185941Z] [2018-01-24T17:04:12.186043Z] # This footprint came from a very large Footprint in a deep HSC coadd patch [2018-01-24T17:04:12.186114Z] self.checkEdge(afwDetect.Footprint.readFits( [2018-01-24T17:04:12.186194Z] > os.path.join(testPath, "testFootprintEdge.fits"))) [2018-01-24T17:04:12.186227Z] E FitsError: [2018-01-24T17:04:12.186369Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.186548Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/testFootprintEdge.fits' with mode 'r' [2018-01-24T17:04:12.186592Z] E cfitsio error stack: [2018-01-24T17:04:12.186617Z] E {0} [2018-01-24T17:04:12.186823Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/testFootprintEdge.fits' with mode 'r' [2018-01-24T17:04:12.186868Z] E cfitsio error stack: [2018-01-24T17:04:12.186890Z] E ' [2018-01-24T17:04:12.186902Z] [2018-01-24T17:04:12.186958Z] tests/test_footprint1.py:1064: FitsError [2018-01-24T17:04:12.187058Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.187070Z] [2018-01-24T17:04:12.187161Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.187257Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.187353Z] that was used when compiling the application program: [2018-01-24T17:04:12.187424Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.187492Z] Version included by the application program = 5 [2018-01-24T17:04:12.187504Z] [2018-01-24T17:04:12.187590Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.187631Z] with the CFITSIO library. [2018-01-24T17:04:12.188620Z] ______________________ ImageCompressionTestCase.testMask _______________________ [2018-01-24T17:04:12.188737Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.188753Z] [2018-01-24T17:04:12.188853Z] self = [2018-01-24T17:04:12.188866Z] [2018-01-24T17:04:12.188905Z] def testMask(self): [2018-01-24T17:04:12.188958Z] """Test compression of mask [2018-01-24T17:04:12.188975Z] [2018-01-24T17:04:12.189254Z] We deliberately don't test PLIO compression (which is designed for [2018-01-24T17:04:12.189387Z] masks) because our default mask type (32) has too much dynamic range [2018-01-24T17:04:12.189461Z] for PLIO (limit of 24 bits). [2018-01-24T17:04:12.189507Z] """ [2018-01-24T17:04:12.189615Z] for algorithm in ("GZIP", "GZIP_SHUFFLE", "RICE"): [2018-01-24T17:04:12.189793Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm)) [2018-01-24T17:04:12.189857Z] mask = self.makeMask() [2018-01-24T17:04:12.189986Z] > unpersisted = self.checkCompressedImage(lsst.afw.image.Mask, mask, compression, atol=0.0) [2018-01-24T17:04:12.189998Z] [2018-01-24T17:04:12.190048Z] tests/test_fitsCompression.py:551: [2018-01-24T17:04:12.190147Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.190222Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.190316Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.190385Z] tests/test_fitsCompression.py:423: in readWriteImage [2018-01-24T17:04:12.190431Z] return ImageClass(filename) [2018-01-24T17:04:12.190537Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.190549Z] [2018-01-24T17:04:12.190617Z] self = [2018-01-24T17:04:12.190752Z] args = ('/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMask-AQ7Xgk.ImageCompressionTestCase.fits',) [2018-01-24T17:04:12.190805Z] kwds = {}, key = (,) [2018-01-24T17:04:12.190864Z] cls = [2018-01-24T17:04:12.190876Z] [2018-01-24T17:04:12.190940Z] def __call__(self, *args, **kwds): [2018-01-24T17:04:12.191049Z] # __call__ is invoked when someone tries to construct an instance of [2018-01-24T17:04:12.191100Z] # the abstract base class. [2018-01-24T17:04:12.191201Z] # If the ABC defines a "TEMPLATE_PARAMS" attribute, we use those strings [2018-01-24T17:04:12.191300Z] # as the kwargs we should intercept to find the right type. [2018-01-24T17:04:12.191390Z] key = tuple(kwds.pop(p, d) for p, d in zip(self.TEMPLATE_PARAMS, [2018-01-24T17:04:12.191492Z] self.TEMPLATE_DEFAULTS)) [2018-01-24T17:04:12.191583Z] # indices are only tuples if there are multiple elements [2018-01-24T17:04:12.191686Z] cls = self._registry.get(key[0] if len(key) == 1 else key, None) [2018-01-24T17:04:12.191724Z] if cls is None: [2018-01-24T17:04:12.191809Z] d = {k: v for k, v in zip(self.TEMPLATE_PARAMS, key)} [2018-01-24T17:04:12.191901Z] raise TypeError("No registered subclass for {}.".format(d)) [2018-01-24T17:04:12.191963Z] > return cls(*args, **kwds) [2018-01-24T17:04:12.191996Z] E FitsError: [2018-01-24T17:04:12.192135Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.192368Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMask-AQ7Xgk.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.192412Z] E cfitsio error stack: [2018-01-24T17:04:12.192438Z] E {0} [2018-01-24T17:04:12.192713Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMask-AQ7Xgk.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.192759Z] E cfitsio error stack: [2018-01-24T17:04:12.192782Z] E ' [2018-01-24T17:04:12.192794Z] [2018-01-24T17:04:12.192947Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/wrappers.py:275: FitsError [2018-01-24T17:04:12.193061Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.193075Z] [2018-01-24T17:04:12.193178Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.193283Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.193354Z] that was used when compiling the application program: [2018-01-24T17:04:12.193422Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.193500Z] Version included by the application program = 5 [2018-01-24T17:04:12.193517Z] [2018-01-24T17:04:12.193606Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.193648Z] with the CFITSIO library. [2018-01-24T17:04:12.193751Z] __________________ ImageCompressionTestCase.testLosslessFloat __________________ [2018-01-24T17:04:12.193857Z] [gw2] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.193881Z] [2018-01-24T17:04:12.193987Z] self = [2018-01-24T17:04:12.194001Z] [2018-01-24T17:04:12.194061Z] def testLosslessFloat(self): [2018-01-24T17:04:12.194168Z] """Test lossless compression of floating-point image""" [2018-01-24T17:04:12.194273Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.194388Z] algorithmList = ("GZIP", "GZIP_SHUFFLE") # Lossless float compression requires GZIP [2018-01-24T17:04:12.194481Z] for cls, algorithm in itertools.product(classList, algorithmList): [2018-01-24T17:04:12.194536Z] image = self.makeImage(cls) [2018-01-24T17:04:12.194663Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm)) [2018-01-24T17:04:12.194753Z] > self.checkCompressedImage(cls, image, compression, atol=0.0) [2018-01-24T17:04:12.194766Z] [2018-01-24T17:04:12.194816Z] tests/test_fitsCompression.py:512: [2018-01-24T17:04:12.194914Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.194989Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.195083Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.195181Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.195194Z] [2018-01-24T17:04:12.195297Z] self = [2018-01-24T17:04:12.195387Z] ImageClass = [2018-01-24T17:04:12.195473Z] image = [2018-01-24T17:04:12.195632Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessFloat-fiR5WB.ImageCompressionTestCase.fits' [2018-01-24T17:04:12.195845Z] options = ImageWriteOptions(compression=ImageCompressionOptions(algorithm=u'GZIP', tiles...uantizeLevel=4.000000, quantizePad=5.000000, fuzz=False, bscale=nan, bzero=nan) [2018-01-24T17:04:12.195905Z] args = () [2018-01-24T17:04:12.195921Z] [2018-01-24T17:04:12.196016Z] def readWriteImage(self, ImageClass, image, filename, options, *args): [2018-01-24T17:04:12.196086Z] """Read the image after it has been written [2018-01-24T17:04:12.196103Z] [2018-01-24T17:04:12.196198Z] This implementation does the persistence using methods on the [2018-01-24T17:04:12.196236Z] ImageClass. [2018-01-24T17:04:12.196253Z] [2018-01-24T17:04:12.196290Z] Parameters [2018-01-24T17:04:12.196327Z] ---------- [2018-01-24T17:04:12.196411Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.196470Z] Class of image to create. [2018-01-24T17:04:12.196541Z] image : `lsst.afw.image.Image` [2018-01-24T17:04:12.196590Z] Image to compress. [2018-01-24T17:04:12.196632Z] filename : `str` [2018-01-24T17:04:12.196691Z] Filename to which to write. [2018-01-24T17:04:12.196771Z] options : `lsst.afw.fits.ImageWriteOptions` [2018-01-24T17:04:12.196820Z] Options for writing. [2018-01-24T17:04:12.196847Z] """ [2018-01-24T17:04:12.196909Z] image.writeFits(filename, options, *args) [2018-01-24T17:04:12.196969Z] > return ImageClass(filename) [2018-01-24T17:04:12.197002Z] E FitsError: [2018-01-24T17:04:12.197159Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.197448Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessFloat-fiR5WB.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.197532Z] E cfitsio error stack: [2018-01-24T17:04:12.197566Z] E {0} [2018-01-24T17:04:12.197885Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessFloat-fiR5WB.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.197946Z] E cfitsio error stack: [2018-01-24T17:04:12.197972Z] E ' [2018-01-24T17:04:12.197985Z] [2018-01-24T17:04:12.198047Z] tests/test_fitsCompression.py:423: FitsError [2018-01-24T17:04:12.198161Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.198173Z] [2018-01-24T17:04:12.198262Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.198358Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.198428Z] that was used when compiling the application program: [2018-01-24T17:04:12.198495Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.198561Z] Version included by the application program = 5 [2018-01-24T17:04:12.198574Z] [2018-01-24T17:04:12.198659Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.198698Z] with the CFITSIO library. [2018-01-24T17:04:12.198799Z] ________________ ImagePersistenceTestCase.testBoostPersistence _________________ [2018-01-24T17:04:12.198891Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.198903Z] [2018-01-24T17:04:12.199010Z] self = [2018-01-24T17:04:12.199023Z] [2018-01-24T17:04:12.199056Z] def setUp(self): [2018-01-24T17:04:12.199119Z] # Create the additionalData PropertySet [2018-01-24T17:04:12.199187Z] self.additionalData = dafBase.PropertySet() [2018-01-24T17:04:12.199250Z] self.additionalData.addInt("sliceId", 0) [2018-01-24T17:04:12.199325Z] self.additionalData.addString("visitId", "fov391") [2018-01-24T17:04:12.199397Z] self.additionalData.addInt("universeSize", 100) [2018-01-24T17:04:12.199469Z] self.additionalData.addString("itemName", "foo") [2018-01-24T17:04:12.199486Z] [2018-01-24T17:04:12.199532Z] # Create an empty Policy [2018-01-24T17:04:12.199582Z] policy = pexPolicy.Policy() [2018-01-24T17:04:12.199599Z] [2018-01-24T17:04:12.199647Z] # Get a Persistence object [2018-01-24T17:04:12.199734Z] self.persistence = dafPers.Persistence.getPersistence(policy) [2018-01-24T17:04:12.199751Z] [2018-01-24T17:04:12.199803Z] # Choose a file to manipulate [2018-01-24T17:04:12.199853Z] self.infile = os.path.join( [2018-01-24T17:04:12.199933Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.199950Z] [2018-01-24T17:04:12.200015Z] > self.image = afwImage.ImageF(self.infile) [2018-01-24T17:04:12.200047Z] E FitsError: [2018-01-24T17:04:12.200187Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.200391Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.200436Z] E cfitsio error stack: [2018-01-24T17:04:12.200461Z] E {0} [2018-01-24T17:04:12.200692Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.200736Z] E cfitsio error stack: [2018-01-24T17:04:12.200758Z] E ' [2018-01-24T17:04:12.200771Z] [2018-01-24T17:04:12.200832Z] tests/test_imagePersistence1.py:82: FitsError [2018-01-24T17:04:12.200931Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.200945Z] [2018-01-24T17:04:12.201037Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.201134Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.201220Z] that was used when compiling the application program: [2018-01-24T17:04:12.201329Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.201415Z] Version included by the application program = 5 [2018-01-24T17:04:12.201429Z] [2018-01-24T17:04:12.201523Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.201580Z] with the CFITSIO library. [2018-01-24T17:04:12.201705Z] _______________ ImagePersistenceTestCase.testBoostPersistenceU16 _______________ [2018-01-24T17:04:12.201808Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.201821Z] [2018-01-24T17:04:12.201945Z] self = [2018-01-24T17:04:12.201960Z] [2018-01-24T17:04:12.201994Z] def setUp(self): [2018-01-24T17:04:12.202057Z] # Create the additionalData PropertySet [2018-01-24T17:04:12.202125Z] self.additionalData = dafBase.PropertySet() [2018-01-24T17:04:12.202190Z] self.additionalData.addInt("sliceId", 0) [2018-01-24T17:04:12.202265Z] self.additionalData.addString("visitId", "fov391") [2018-01-24T17:04:12.202337Z] self.additionalData.addInt("universeSize", 100) [2018-01-24T17:04:12.202410Z] self.additionalData.addString("itemName", "foo") [2018-01-24T17:04:12.202427Z] [2018-01-24T17:04:12.202473Z] # Create an empty Policy [2018-01-24T17:04:12.202524Z] policy = pexPolicy.Policy() [2018-01-24T17:04:12.202540Z] [2018-01-24T17:04:12.202589Z] # Get a Persistence object [2018-01-24T17:04:12.202683Z] self.persistence = dafPers.Persistence.getPersistence(policy) [2018-01-24T17:04:12.202701Z] [2018-01-24T17:04:12.202753Z] # Choose a file to manipulate [2018-01-24T17:04:12.202803Z] self.infile = os.path.join( [2018-01-24T17:04:12.202884Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.202901Z] [2018-01-24T17:04:12.202993Z] > self.image = afwImage.ImageF(self.infile) [2018-01-24T17:04:12.203029Z] E FitsError: [2018-01-24T17:04:12.203170Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.203376Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.203420Z] E cfitsio error stack: [2018-01-24T17:04:12.203446Z] E {0} [2018-01-24T17:04:12.203679Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.203723Z] E cfitsio error stack: [2018-01-24T17:04:12.203745Z] E ' [2018-01-24T17:04:12.203758Z] [2018-01-24T17:04:12.203818Z] tests/test_imagePersistence1.py:82: FitsError [2018-01-24T17:04:12.203918Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.203930Z] [2018-01-24T17:04:12.204020Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.204115Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.204185Z] that was used when compiling the application program: [2018-01-24T17:04:12.204252Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.204333Z] Version included by the application program = 5 [2018-01-24T17:04:12.204346Z] [2018-01-24T17:04:12.204435Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.204475Z] with the CFITSIO library. [2018-01-24T17:04:12.204792Z] _________________ ImagePersistenceTestCase.testFitsPersistence _________________ [2018-01-24T17:04:12.204910Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.204937Z] [2018-01-24T17:04:12.205083Z] self = [2018-01-24T17:04:12.205111Z] [2018-01-24T17:04:12.205151Z] def setUp(self): [2018-01-24T17:04:12.205232Z] # Create the additionalData PropertySet [2018-01-24T17:04:12.205317Z] self.additionalData = dafBase.PropertySet() [2018-01-24T17:04:12.205409Z] self.additionalData.addInt("sliceId", 0) [2018-01-24T17:04:12.205509Z] self.additionalData.addString("visitId", "fov391") [2018-01-24T17:04:12.205589Z] self.additionalData.addInt("universeSize", 100) [2018-01-24T17:04:12.205676Z] self.additionalData.addString("itemName", "foo") [2018-01-24T17:04:12.205693Z] [2018-01-24T17:04:12.205740Z] # Create an empty Policy [2018-01-24T17:04:12.205790Z] policy = pexPolicy.Policy() [2018-01-24T17:04:12.205808Z] [2018-01-24T17:04:12.205857Z] # Get a Persistence object [2018-01-24T17:04:12.205943Z] self.persistence = dafPers.Persistence.getPersistence(policy) [2018-01-24T17:04:12.205960Z] [2018-01-24T17:04:12.206012Z] # Choose a file to manipulate [2018-01-24T17:04:12.206062Z] self.infile = os.path.join( [2018-01-24T17:04:12.206141Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.206158Z] [2018-01-24T17:04:12.206223Z] > self.image = afwImage.ImageF(self.infile) [2018-01-24T17:04:12.206255Z] E FitsError: [2018-01-24T17:04:12.206395Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.206600Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.206645Z] E cfitsio error stack: [2018-01-24T17:04:12.206670Z] E {0} [2018-01-24T17:04:12.206901Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.206945Z] E cfitsio error stack: [2018-01-24T17:04:12.206967Z] E ' [2018-01-24T17:04:12.206979Z] [2018-01-24T17:04:12.207039Z] tests/test_imagePersistence1.py:82: FitsError [2018-01-24T17:04:12.207138Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.207151Z] [2018-01-24T17:04:12.207240Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.207335Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.207405Z] that was used when compiling the application program: [2018-01-24T17:04:12.207472Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.207538Z] Version included by the application program = 5 [2018-01-24T17:04:12.207550Z] [2018-01-24T17:04:12.207635Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.207675Z] with the CFITSIO library. [2018-01-24T17:04:12.208505Z] ___________________ DecoratedImageTestCase.testReadWriteXY0 ____________________ [2018-01-24T17:04:12.208636Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.208660Z] [2018-01-24T17:04:12.208755Z] self = [2018-01-24T17:04:12.208769Z] [2018-01-24T17:04:12.208830Z] def testReadWriteXY0(self): [2018-01-24T17:04:12.208953Z] """Test that we read and write (X0, Y0) correctly""" [2018-01-24T17:04:12.209042Z] im = afwImage.ImageF(afwGeom.Extent2I(10, 20)) [2018-01-24T17:04:12.209072Z] [2018-01-24T17:04:12.209109Z] x0, y0 = 1, 2 [2018-01-24T17:04:12.209151Z] im.setXY0(x0, y0) [2018-01-24T17:04:12.209237Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.209287Z] im.writeFits(tmpFile) [2018-01-24T17:04:12.209304Z] [2018-01-24T17:04:12.209394Z] > im2 = im.Factory(tmpFile) [2018-01-24T17:04:12.209419Z] [2018-01-24T17:04:12.209477Z] tests/test_image.py:746: [2018-01-24T17:04:12.209596Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.209611Z] [2018-01-24T17:04:12.209695Z] self = [2018-01-24T17:04:12.209824Z] args = ('/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_image_testReadWriteXY0-xCa2u1.fits',) [2018-01-24T17:04:12.209848Z] kwargs = {} [2018-01-24T17:04:12.209860Z] [2018-01-24T17:04:12.209915Z] def Factory(self, *args, **kwargs): [2018-01-24T17:04:12.209972Z] """Return an object of this type [2018-01-24T17:04:12.210001Z] """ [2018-01-24T17:04:12.210051Z] > return cls(*args, **kwargs) [2018-01-24T17:04:12.210084Z] E FitsError: [2018-01-24T17:04:12.210246Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.210451Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_image_testReadWriteXY0-xCa2u1.fits' with mode 'r' [2018-01-24T17:04:12.210495Z] E cfitsio error stack: [2018-01-24T17:04:12.210521Z] E {0} [2018-01-24T17:04:12.210756Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_image_testReadWriteXY0-xCa2u1.fits' with mode 'r' [2018-01-24T17:04:12.210797Z] E cfitsio error stack: [2018-01-24T17:04:12.210818Z] E ' [2018-01-24T17:04:12.210829Z] [2018-01-24T17:04:12.210889Z] python/lsst/afw/image/slicing.py:104: FitsError [2018-01-24T17:04:12.210982Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.210994Z] [2018-01-24T17:04:12.211095Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.211217Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.211291Z] that was used when compiling the application program: [2018-01-24T17:04:12.211358Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.211436Z] Version included by the application program = 5 [2018-01-24T17:04:12.211447Z] [2018-01-24T17:04:12.211529Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.211567Z] with the CFITSIO library. [2018-01-24T17:04:12.212498Z] __________________________ HeaderTestCase.testHeaders __________________________ [2018-01-24T17:04:12.212660Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.212689Z] [2018-01-24T17:04:12.212770Z] self = [2018-01-24T17:04:12.212784Z] [2018-01-24T17:04:12.212828Z] def testHeaders(self): [2018-01-24T17:04:12.212880Z] header = {"STR": "String", [2018-01-24T17:04:12.212953Z] "INT": 12345, [2018-01-24T17:04:12.213026Z] "FLOAT": 678.9, [2018-01-24T17:04:12.213089Z] "NAN": numpy.nan, [2018-01-24T17:04:12.213152Z] "PLUSINF": numpy.inf, [2018-01-24T17:04:12.213227Z] "MINUSINF": -numpy.inf, [2018-01-24T17:04:12.213304Z] "LONG": long(987654321), [2018-01-24T17:04:12.213339Z] } [2018-01-24T17:04:12.213357Z] [2018-01-24T17:04:12.213413Z] exp = afwImage.ExposureI(0, 0) [2018-01-24T17:04:12.213466Z] metadata = exp.getMetadata() [2018-01-24T17:04:12.213518Z] for k, v in header.items(): [2018-01-24T17:04:12.213564Z] metadata.add(k, v) [2018-01-24T17:04:12.213582Z] [2018-01-24T17:04:12.213670Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.213722Z] exp.writeFits(filename) [2018-01-24T17:04:12.213786Z] > exp = afwImage.ExposureI(filename) [2018-01-24T17:04:12.213825Z] E FitsError: [2018-01-24T17:04:12.213975Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.214187Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_header_testHeaders-l3srAm.fits' with mode 'r' [2018-01-24T17:04:12.214237Z] E cfitsio error stack: [2018-01-24T17:04:12.214268Z] E {0} [2018-01-24T17:04:12.214508Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_header_testHeaders-l3srAm.fits' with mode 'r' [2018-01-24T17:04:12.214559Z] E cfitsio error stack: [2018-01-24T17:04:12.214586Z] E ' [2018-01-24T17:04:12.214611Z] [2018-01-24T17:04:12.214660Z] tests/test_header.py:53: FitsError [2018-01-24T17:04:12.214760Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.214772Z] [2018-01-24T17:04:12.214862Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.214959Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.215029Z] that was used when compiling the application program: [2018-01-24T17:04:12.215096Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.215163Z] Version included by the application program = 5 [2018-01-24T17:04:12.215176Z] [2018-01-24T17:04:12.215262Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.215302Z] with the CFITSIO library. [2018-01-24T17:04:12.216279Z] _________________ ImageCompressionTestCase.testLossyFloatOurs __________________ [2018-01-24T17:04:12.216444Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.216464Z] [2018-01-24T17:04:12.216589Z] self = [2018-01-24T17:04:12.216619Z] [2018-01-24T17:04:12.216695Z] def testLossyFloatOurs(self): [2018-01-24T17:04:12.216791Z] """Test lossy compression of floating-point images ourselves [2018-01-24T17:04:12.216809Z] [2018-01-24T17:04:12.216922Z] We do lossy compression by scaling first. We have full control over [2018-01-24T17:04:12.217045Z] the scaling (multiple scaling algorithms), and we have access to our [2018-01-24T17:04:12.217118Z] own masks when we do statistics. [2018-01-24T17:04:12.217150Z] """ [2018-01-24T17:04:12.217247Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.217338Z] algorithmList = ("GZIP", "GZIP_SHUFFLE", "RICE") [2018-01-24T17:04:12.217389Z] bitpixList = (16, 32) [2018-01-24T17:04:12.217440Z] quantizeList = (4.0, 10.0) [2018-01-24T17:04:12.217585Z] for cls, algorithm, bitpix, quantize in itertools.product(classList, algorithmList, bitpixList, [2018-01-24T17:04:12.217699Z] quantizeList): [2018-01-24T17:04:12.217861Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm), [2018-01-24T17:04:12.217952Z] quantizeLevel=0.0) [2018-01-24T17:04:12.218079Z] scaling = ImageScalingOptions(ImageScalingOptions.STDEV_BOTH, bitpix, quantizeLevel=quantize, [2018-01-24T17:04:12.218148Z] fuzz=True) [2018-01-24T17:04:12.218202Z] image = self.makeImage(cls) [2018-01-24T17:04:12.218320Z] > self.checkCompressedImage(cls, image, compression, scaling, atol=self.noise/quantize) [2018-01-24T17:04:12.218333Z] [2018-01-24T17:04:12.218382Z] tests/test_fitsCompression.py:590: [2018-01-24T17:04:12.218481Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.218555Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.218648Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.218747Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.218759Z] [2018-01-24T17:04:12.218862Z] self = [2018-01-24T17:04:12.218934Z] ImageClass = [2018-01-24T17:04:12.219017Z] image = [2018-01-24T17:04:12.219172Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatOurs-zhtAgO.ImageCompressionTestCase.fits' [2018-01-24T17:04:12.219368Z] options = ImageWriteOptions(compression=ImageCompressionOptions(algorithm=u'GZIP', tiles...vel=4.000000, quantizePad=5.000000, fuzz=True, bscale=1.000000, bzero=0.000000) [2018-01-24T17:04:12.219392Z] args = () [2018-01-24T17:04:12.219404Z] [2018-01-24T17:04:12.219496Z] def readWriteImage(self, ImageClass, image, filename, options, *args): [2018-01-24T17:04:12.219565Z] """Read the image after it has been written [2018-01-24T17:04:12.219582Z] [2018-01-24T17:04:12.219673Z] This implementation does the persistence using methods on the [2018-01-24T17:04:12.219710Z] ImageClass. [2018-01-24T17:04:12.219726Z] [2018-01-24T17:04:12.219762Z] Parameters [2018-01-24T17:04:12.219798Z] ---------- [2018-01-24T17:04:12.219879Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.219935Z] Class of image to create. [2018-01-24T17:04:12.219992Z] image : `lsst.afw.image.Image` [2018-01-24T17:04:12.220041Z] Image to compress. [2018-01-24T17:04:12.220083Z] filename : `str` [2018-01-24T17:04:12.220154Z] Filename to which to write. [2018-01-24T17:04:12.220227Z] options : `lsst.afw.fits.ImageWriteOptions` [2018-01-24T17:04:12.220306Z] Options for writing. [2018-01-24T17:04:12.220339Z] """ [2018-01-24T17:04:12.220406Z] image.writeFits(filename, options, *args) [2018-01-24T17:04:12.220458Z] > return ImageClass(filename) [2018-01-24T17:04:12.220492Z] E FitsError: [2018-01-24T17:04:12.220647Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.220892Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatOurs-zhtAgO.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.220938Z] E cfitsio error stack: [2018-01-24T17:04:12.220977Z] E {0} [2018-01-24T17:04:12.221311Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatOurs-zhtAgO.ImageCompressionTestCase.fits' with mode 'r' [2018-01-24T17:04:12.221374Z] E cfitsio error stack: [2018-01-24T17:04:12.221400Z] E ' [2018-01-24T17:04:12.221413Z] [2018-01-24T17:04:12.221491Z] tests/test_fitsCompression.py:423: FitsError [2018-01-24T17:04:12.221597Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.221611Z] [2018-01-24T17:04:12.221704Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.221804Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.221876Z] that was used when compiling the application program: [2018-01-24T17:04:12.221957Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.222024Z] Version included by the application program = 5 [2018-01-24T17:04:12.222050Z] [2018-01-24T17:04:12.222139Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.222179Z] with the CFITSIO library. [2018-01-24T17:04:12.222281Z] __________________ HeavyFootprintTestCase.testFitsPersistence __________________ [2018-01-24T17:04:12.222389Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.222402Z] [2018-01-24T17:04:12.222504Z] self = [2018-01-24T17:04:12.222517Z] [2018-01-24T17:04:12.222565Z] def testFitsPersistence(self): [2018-01-24T17:04:12.222636Z] heavy1 = afwDetect.HeavyFootprintF(self.foot) [2018-01-24T17:04:12.222688Z] heavy1.getImageArray()[:] = \ [2018-01-24T17:04:12.222774Z] np.random.randn(self.foot.getArea()).astype(np.float32) [2018-01-24T17:04:12.222825Z] heavy1.getMaskArray()[:] = \ [2018-01-24T17:04:12.222947Z] np.random.randint(low=0, high=2, size=self.foot.getArea()).astype(np.uint16) [2018-01-24T17:04:12.223004Z] heavy1.getVarianceArray()[:] = \ [2018-01-24T17:04:12.223093Z] np.random.randn(self.foot.getArea()).astype(np.float32) [2018-01-24T17:04:12.223181Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.223236Z] heavy1.writeFits(filename) [2018-01-24T17:04:12.223322Z] > heavy2 = afwDetect.HeavyFootprintF.readFits(filename) [2018-01-24T17:04:12.223360Z] E FitsError: [2018-01-24T17:04:12.223511Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.223740Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_heavyFootprint_testFitsPersistence-uWQ4fW.fits' with mode 'r' [2018-01-24T17:04:12.223790Z] E cfitsio error stack: [2018-01-24T17:04:12.223821Z] E {0} [2018-01-24T17:04:12.224089Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_heavyFootprint_testFitsPersistence-uWQ4fW.fits' with mode 'r' [2018-01-24T17:04:12.224138Z] E cfitsio error stack: [2018-01-24T17:04:12.224165Z] E ' [2018-01-24T17:04:12.224178Z] [2018-01-24T17:04:12.224237Z] tests/test_heavyFootprint.py:254: FitsError [2018-01-24T17:04:12.224336Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.224348Z] [2018-01-24T17:04:12.224438Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.224548Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.224635Z] that was used when compiling the application program: [2018-01-24T17:04:12.224741Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.224820Z] Version included by the application program = 5 [2018-01-24T17:04:12.224833Z] [2018-01-24T17:04:12.224940Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.224985Z] with the CFITSIO library. [2018-01-24T17:04:12.225101Z] __________ HeavyFootprintTestCase.testLegacyHeavyFootprintMaskLoading __________ [2018-01-24T17:04:12.225198Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.225211Z] [2018-01-24T17:04:12.225329Z] self = [2018-01-24T17:04:12.225342Z] [2018-01-24T17:04:12.225408Z] def testLegacyHeavyFootprintMaskLoading(self): [2018-01-24T17:04:12.225484Z] filename = os.path.join(os.path.split(__file__)[0], [2018-01-24T17:04:12.225570Z] "data", "legacyHeavyFootprint.fits") [2018-01-24T17:04:12.225650Z] > heavyFp = afwDetect.HeavyFootprintF.readFits(filename) [2018-01-24T17:04:12.225683Z] E FitsError: [2018-01-24T17:04:12.225823Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.226011Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/legacyHeavyFootprint.fits' with mode 'r' [2018-01-24T17:04:12.226055Z] E cfitsio error stack: [2018-01-24T17:04:12.226081Z] E {0} [2018-01-24T17:04:12.226295Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/legacyHeavyFootprint.fits' with mode 'r' [2018-01-24T17:04:12.226342Z] E cfitsio error stack: [2018-01-24T17:04:12.226365Z] E ' [2018-01-24T17:04:12.226377Z] [2018-01-24T17:04:12.226435Z] tests/test_heavyFootprint.py:268: FitsError [2018-01-24T17:04:12.226534Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.226547Z] [2018-01-24T17:04:12.226637Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.226732Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.226802Z] that was used when compiling the application program: [2018-01-24T17:04:12.226883Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.226952Z] Version included by the application program = 5 [2018-01-24T17:04:12.226964Z] [2018-01-24T17:04:12.227052Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.227093Z] with the CFITSIO library. [2018-01-24T17:04:12.228107Z] ____________________ FootprintTestCase.testTablePersistence ____________________ [2018-01-24T17:04:12.228232Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.228255Z] [2018-01-24T17:04:12.228372Z] self = [2018-01-24T17:04:12.228395Z] [2018-01-24T17:04:12.228448Z] def testTablePersistence(self): [2018-01-24T17:04:12.228535Z] ellipse = afwGeom.Ellipse(afwGeomEllipses.Axes(8, 6, 0.25), [2018-01-24T17:04:12.228611Z] afwGeom.Point2D(9, 15)) [2018-01-24T17:04:12.228726Z] fp1 = afwDetect.Footprint(afwGeom.SpanSet.fromShape(ellipse)) [2018-01-24T17:04:12.228772Z] fp1.addPeak(6, 7, 2) [2018-01-24T17:04:12.228815Z] fp1.addPeak(8, 9, 3) [2018-01-24T17:04:12.228899Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.228949Z] fp1.writeFits(tmpFile) [2018-01-24T17:04:12.229022Z] > fp2 = afwDetect.Footprint.readFits(tmpFile) [2018-01-24T17:04:12.229060Z] E FitsError: [2018-01-24T17:04:12.229206Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.229445Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_footprint1_testTablePersistence-7B8KpN.fits' with mode 'r' [2018-01-24T17:04:12.229495Z] E cfitsio error stack: [2018-01-24T17:04:12.229526Z] E {0} [2018-01-24T17:04:12.229780Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_footprint1_testTablePersistence-7B8KpN.fits' with mode 'r' [2018-01-24T17:04:12.229830Z] E cfitsio error stack: [2018-01-24T17:04:12.229857Z] E ' [2018-01-24T17:04:12.229869Z] [2018-01-24T17:04:12.229925Z] tests/test_footprint1.py:234: FitsError [2018-01-24T17:04:12.230028Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.230042Z] [2018-01-24T17:04:12.230147Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.230243Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.230313Z] that was used when compiling the application program: [2018-01-24T17:04:12.230393Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.230461Z] Version included by the application program = 5 [2018-01-24T17:04:12.230474Z] [2018-01-24T17:04:12.230562Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.230603Z] with the CFITSIO library. [2018-01-24T17:04:12.231709Z] ___________________________ ReadFitsTestCase.testF64 ___________________________ [2018-01-24T17:04:12.231822Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.231838Z] [2018-01-24T17:04:12.231919Z] self = [2018-01-24T17:04:12.231932Z] [2018-01-24T17:04:12.232011Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.232050Z] def testF64(self): [2018-01-24T17:04:12.232122Z] """Test reading a U16 file into a F64 image""" [2018-01-24T17:04:12.232212Z] > im = afwImage.ImageD(os.path.join(dataDir, "small_img.fits")) [2018-01-24T17:04:12.232246Z] E FitsError: [2018-01-24T17:04:12.232392Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.232589Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.232635Z] E cfitsio error stack: [2018-01-24T17:04:12.232661Z] E {0} [2018-01-24T17:04:12.232884Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.232930Z] E cfitsio error stack: [2018-01-24T17:04:12.232952Z] E ' [2018-01-24T17:04:12.232965Z] [2018-01-24T17:04:12.233017Z] tests/test_imageIo1.py:91: FitsError [2018-01-24T17:04:12.233120Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.233132Z] [2018-01-24T17:04:12.233225Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.233324Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.233396Z] that was used when compiling the application program: [2018-01-24T17:04:12.233464Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.233532Z] Version included by the application program = 5 [2018-01-24T17:04:12.233545Z] [2018-01-24T17:04:12.233633Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.233674Z] with the CFITSIO library. [2018-01-24T17:04:12.235152Z] __________________________ MaskTestCase.testReadFits ___________________________ [2018-01-24T17:04:12.235266Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.235295Z] [2018-01-24T17:04:12.235384Z] self = [2018-01-24T17:04:12.235409Z] [2018-01-24T17:04:12.235504Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.235557Z] def testReadFits(self): [2018-01-24T17:04:12.235637Z] nMaskPlanes0 = self.Mask.getNumPlanesUsed() [2018-01-24T17:04:12.235728Z] # will shift any unrecognised mask planes into unused slots [2018-01-24T17:04:12.235791Z] > mask = self.Mask(self.maskFile, hdu=2) [2018-01-24T17:04:12.235824Z] E FitsError: [2018-01-24T17:04:12.235965Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.236171Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.236217Z] E cfitsio error stack: [2018-01-24T17:04:12.236243Z] E {0} [2018-01-24T17:04:12.236476Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.236520Z] E cfitsio error stack: [2018-01-24T17:04:12.236542Z] E ' [2018-01-24T17:04:12.236556Z] [2018-01-24T17:04:12.236604Z] tests/test_mask.py:234: FitsError [2018-01-24T17:04:12.236703Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.236716Z] [2018-01-24T17:04:12.236806Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.236902Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.236972Z] that was used when compiling the application program: [2018-01-24T17:04:12.237038Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.237105Z] Version included by the application program = 5 [2018-01-24T17:04:12.237117Z] [2018-01-24T17:04:12.237203Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.237243Z] with the CFITSIO library. [2018-01-24T17:04:12.238704Z] _____________________ DecoratedImageTestCase.testWriteFits _____________________ [2018-01-24T17:04:12.238829Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.238854Z] [2018-01-24T17:04:12.238957Z] self = [2018-01-24T17:04:12.238979Z] [2018-01-24T17:04:12.239062Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.239108Z] def testWriteFits(self): [2018-01-24T17:04:12.239162Z] """Test writing FITS files""" [2018-01-24T17:04:12.239180Z] [2018-01-24T17:04:12.239266Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.239319Z] if self.fileForMetadata: [2018-01-24T17:04:12.239408Z] > imgU = afwImage.DecoratedImageF(self.fileForMetadata) [2018-01-24T17:04:12.239451Z] E FitsError: [2018-01-24T17:04:12.239605Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.239837Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.239895Z] E cfitsio error stack: [2018-01-24T17:04:12.239931Z] E {0} [2018-01-24T17:04:12.240163Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.240217Z] E cfitsio error stack: [2018-01-24T17:04:12.240250Z] E ' [2018-01-24T17:04:12.240263Z] [2018-01-24T17:04:12.240313Z] tests/test_image.py:717: FitsError [2018-01-24T17:04:12.240425Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.240438Z] [2018-01-24T17:04:12.240528Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.240624Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.240694Z] that was used when compiling the application program: [2018-01-24T17:04:12.240760Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.240827Z] Version included by the application program = 5 [2018-01-24T17:04:12.240839Z] [2018-01-24T17:04:12.240925Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.240965Z] with the CFITSIO library. [2018-01-24T17:04:12.242180Z] _______________________ MaskTestCase.testReadFitsConform _______________________ [2018-01-24T17:04:12.242298Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.242326Z] [2018-01-24T17:04:12.242409Z] self = [2018-01-24T17:04:12.242422Z] [2018-01-24T17:04:12.242545Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.242612Z] def testReadFitsConform(self): [2018-01-24T17:04:12.242645Z] hdu = 2 [2018-01-24T17:04:12.242722Z] mask = afwImage.Mask(self.maskFile, hdu, None, [2018-01-24T17:04:12.242847Z] > afwGeom.Box2I(), afwImage.LOCAL, True) [2018-01-24T17:04:12.242863Z] [2018-01-24T17:04:12.242902Z] tests/test_mask.py:242: [2018-01-24T17:04:12.243014Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.243040Z] [2018-01-24T17:04:12.243114Z] self = [2018-01-24T17:04:12.243323Z] args = ('/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits', 2, None, Box2I(minimum=Point2I(0, 0), dimensions=Extent2I(0, 0)), ImageOrigin.LOCAL, True) [2018-01-24T17:04:12.243378Z] kwds = {}, key = (,) [2018-01-24T17:04:12.243451Z] cls = [2018-01-24T17:04:12.243464Z] [2018-01-24T17:04:12.243518Z] def __call__(self, *args, **kwds): [2018-01-24T17:04:12.243613Z] # __call__ is invoked when someone tries to construct an instance of [2018-01-24T17:04:12.243662Z] # the abstract base class. [2018-01-24T17:04:12.243761Z] # If the ABC defines a "TEMPLATE_PARAMS" attribute, we use those strings [2018-01-24T17:04:12.243846Z] # as the kwargs we should intercept to find the right type. [2018-01-24T17:04:12.243936Z] key = tuple(kwds.pop(p, d) for p, d in zip(self.TEMPLATE_PARAMS, [2018-01-24T17:04:12.244029Z] self.TEMPLATE_DEFAULTS)) [2018-01-24T17:04:12.244111Z] # indices are only tuples if there are multiple elements [2018-01-24T17:04:12.244201Z] cls = self._registry.get(key[0] if len(key) == 1 else key, None) [2018-01-24T17:04:12.244238Z] if cls is None: [2018-01-24T17:04:12.244321Z] d = {k: v for k, v in zip(self.TEMPLATE_PARAMS, key)} [2018-01-24T17:04:12.244411Z] raise TypeError("No registered subclass for {}.".format(d)) [2018-01-24T17:04:12.244459Z] > return cls(*args, **kwds) [2018-01-24T17:04:12.244491Z] E FitsError: [2018-01-24T17:04:12.244643Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.244843Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.244887Z] E cfitsio error stack: [2018-01-24T17:04:12.244913Z] E {0} [2018-01-24T17:04:12.245129Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.245173Z] E cfitsio error stack: [2018-01-24T17:04:12.245195Z] E ' [2018-01-24T17:04:12.245208Z] [2018-01-24T17:04:12.245332Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/wrappers.py:275: FitsError [2018-01-24T17:04:12.245432Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.245444Z] [2018-01-24T17:04:12.245534Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.245629Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.245699Z] that was used when compiling the application program: [2018-01-24T17:04:12.245766Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.245832Z] Version included by the application program = 5 [2018-01-24T17:04:12.245844Z] [2018-01-24T17:04:12.245930Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.245970Z] with the CFITSIO library. [2018-01-24T17:04:12.246116Z] _______________________ ReadFitsTestCase.testLongStrings _______________________ [2018-01-24T17:04:12.246229Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.246244Z] [2018-01-24T17:04:12.246345Z] self = [2018-01-24T17:04:12.246358Z] [2018-01-24T17:04:12.246404Z] def testLongStrings(self): [2018-01-24T17:04:12.246441Z] keyWord = 'ZZZ' [2018-01-24T17:04:12.246547Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.246646Z] longString = ' '.join(['This is a long string.'] * 8) [2018-01-24T17:04:12.246674Z] [2018-01-24T17:04:12.246742Z] expOrig = afwImage.ExposureF(100, 100) [2018-01-24T17:04:12.246800Z] mdOrig = expOrig.getMetadata() [2018-01-24T17:04:12.246873Z] mdOrig.set(keyWord, longString) [2018-01-24T17:04:12.246928Z] expOrig.writeFits(tmpFile) [2018-01-24T17:04:12.246946Z] [2018-01-24T17:04:12.247012Z] > expNew = afwImage.ExposureF(tmpFile) [2018-01-24T17:04:12.247051Z] E FitsError: [2018-01-24T17:04:12.247200Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.247417Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo1_testLongStrings-yNLY78.fits' with mode 'r' [2018-01-24T17:04:12.247468Z] E cfitsio error stack: [2018-01-24T17:04:12.247499Z] E {0} [2018-01-24T17:04:12.247745Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo1_testLongStrings-yNLY78.fits' with mode 'r' [2018-01-24T17:04:12.247795Z] E cfitsio error stack: [2018-01-24T17:04:12.247822Z] E ' [2018-01-24T17:04:12.247834Z] [2018-01-24T17:04:12.247888Z] tests/test_imageIo1.py:174: FitsError [2018-01-24T17:04:12.247990Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.248003Z] [2018-01-24T17:04:12.248095Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.248220Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.248295Z] that was used when compiling the application program: [2018-01-24T17:04:12.248365Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.248433Z] Version included by the application program = 5 [2018-01-24T17:04:12.248446Z] [2018-01-24T17:04:12.248536Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.248577Z] with the CFITSIO library. [2018-01-24T17:04:12.249720Z] ____________________ ReadFitsTestCase.testBBoxFromMetadata _____________________ [2018-01-24T17:04:12.249834Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.249850Z] [2018-01-24T17:04:12.249956Z] self = [2018-01-24T17:04:12.249994Z] [2018-01-24T17:04:12.250073Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.250126Z] def testBBoxFromMetadata(self): [2018-01-24T17:04:12.250239Z] self.checkBBoxFromMetadata(os.path.join(dataDir, "871034p_1_img.fits"), [2018-01-24T17:04:12.250388Z] > afwGeom.Box2I(afwGeom.Point2I(0, 0), afwGeom.Extent2I(2112, 4644))) [2018-01-24T17:04:12.250408Z] [2018-01-24T17:04:12.250452Z] tests/test_imageIo1.py:185: [2018-01-24T17:04:12.250553Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.250566Z] [2018-01-24T17:04:12.250656Z] self = [2018-01-24T17:04:12.250763Z] filename = '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_img.fits' [2018-01-24T17:04:12.250854Z] expected = Box2I(minimum=Point2I(0, 0), dimensions=Extent2I(2112, 4644)) [2018-01-24T17:04:12.250875Z] hdu = 0 [2018-01-24T17:04:12.250887Z] [2018-01-24T17:04:12.250968Z] def checkBBoxFromMetadata(self, filename, expected, hdu=0): [2018-01-24T17:04:12.251042Z] > metadata = afwImage.readMetadata(filename, hdu) [2018-01-24T17:04:12.251075Z] E FitsError: [2018-01-24T17:04:12.251217Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.251414Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_img.fits' with mode 'r' [2018-01-24T17:04:12.251458Z] E cfitsio error stack: [2018-01-24T17:04:12.251484Z] E {0} [2018-01-24T17:04:12.251707Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_img.fits' with mode 'r' [2018-01-24T17:04:12.251752Z] E cfitsio error stack: [2018-01-24T17:04:12.251774Z] E ' [2018-01-24T17:04:12.251786Z] [2018-01-24T17:04:12.251839Z] tests/test_imageIo1.py:178: FitsError [2018-01-24T17:04:12.251939Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.251951Z] [2018-01-24T17:04:12.252042Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.252138Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.252209Z] that was used when compiling the application program: [2018-01-24T17:04:12.252276Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.252343Z] Version included by the application program = 5 [2018-01-24T17:04:12.252355Z] [2018-01-24T17:04:12.252441Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.252481Z] with the CFITSIO library. [2018-01-24T17:04:12.253483Z] ___________________________ ReadFitsTestCase.testF32 ___________________________ [2018-01-24T17:04:12.253615Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.253644Z] [2018-01-24T17:04:12.253751Z] self = [2018-01-24T17:04:12.253777Z] [2018-01-24T17:04:12.253871Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.253922Z] def testF32(self): [2018-01-24T17:04:12.253978Z] """Test reading F32 image""" [2018-01-24T17:04:12.254075Z] > im = afwImage.ImageD(os.path.join(dataDir, "871034p_1_MI.fits"), 3) [2018-01-24T17:04:12.254122Z] E FitsError: [2018-01-24T17:04:12.254263Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.254458Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.254504Z] E cfitsio error stack: [2018-01-24T17:04:12.254530Z] E {0} [2018-01-24T17:04:12.254751Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.254796Z] E cfitsio error stack: [2018-01-24T17:04:12.254818Z] E ' [2018-01-24T17:04:12.254830Z] [2018-01-24T17:04:12.254881Z] tests/test_imageIo1.py:83: FitsError [2018-01-24T17:04:12.254993Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.255006Z] [2018-01-24T17:04:12.255100Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.255212Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.255291Z] that was used when compiling the application program: [2018-01-24T17:04:12.255360Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.255430Z] Version included by the application program = 5 [2018-01-24T17:04:12.255443Z] [2018-01-24T17:04:12.255533Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.255574Z] with the CFITSIO library. [2018-01-24T17:04:12.257071Z] _________ ExposureMultiExtensionTestCase.testReadableExtensionAsImage __________ [2018-01-24T17:04:12.257192Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.257211Z] [2018-01-24T17:04:12.257358Z] self = [2018-01-24T17:04:12.257383Z] [2018-01-24T17:04:12.257445Z] def testReadableExtensionAsImage(self): [2018-01-24T17:04:12.257498Z] # Test for case 2.1.2 above. [2018-01-24T17:04:12.257597Z] with tmpFits(None, np.array([[1]]), np.array([[2]], dtype=np.int16), [2018-01-24T17:04:12.257679Z] np.array([[3]])) as fitsfile: [2018-01-24T17:04:12.257808Z] > self._checkImage(self._constructImage(fitsfile, 3), 1, 1, 3, 0, 0) [2018-01-24T17:04:12.257827Z] [2018-01-24T17:04:12.257878Z] tests/test_maskedImageIO.py:278: [2018-01-24T17:04:12.257979Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.257993Z] [2018-01-24T17:04:12.258111Z] self = [2018-01-24T17:04:12.258214Z] filename = '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpSfMJH2/test.fits[3]' [2018-01-24T17:04:12.258257Z] hdu = 3, needAllHdus = False [2018-01-24T17:04:12.258269Z] [2018-01-24T17:04:12.258356Z] def _constructImage(self, filename, hdu=None, needAllHdus=False): [2018-01-24T17:04:12.258451Z] # Construct an instance of ExposureF by loading from filename. If hdu [2018-01-24T17:04:12.258548Z] # is specified, load that HDU specifically. needAllHdus exists for API [2018-01-24T17:04:12.258644Z] # compatibility, but should always be False. This function exists only [2018-01-24T17:04:12.258739Z] # to stub default arguments into the constructor for parameters which [2018-01-24T17:04:12.258800Z] # we are not exercising in this test. [2018-01-24T17:04:12.258856Z] if hdu: [2018-01-24T17:04:12.258924Z] filename = "%s[%d]" % (filename, hdu) [2018-01-24T17:04:12.258962Z] if needAllHdus: [2018-01-24T17:04:12.259042Z] raise Exception("Cannot needAllHdus with Exposure") [2018-01-24T17:04:12.259101Z] > return afwImage.ExposureF(filename) [2018-01-24T17:04:12.259135Z] E FitsError: [2018-01-24T17:04:12.259275Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.259467Z] E cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpSfMJH2/test.fits[3]' with mode 'r' [2018-01-24T17:04:12.259511Z] E cfitsio error stack: [2018-01-24T17:04:12.259537Z] E {0} [2018-01-24T17:04:12.259775Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpSfMJH2/test.fits[3]' with mode 'r' [2018-01-24T17:04:12.259822Z] E cfitsio error stack: [2018-01-24T17:04:12.259845Z] E ' [2018-01-24T17:04:12.259857Z] [2018-01-24T17:04:12.259916Z] tests/test_maskedImageIO.py:368: FitsError [2018-01-24T17:04:12.260026Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.260039Z] [2018-01-24T17:04:12.260133Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.260231Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.260308Z] that was used when compiling the application program: [2018-01-24T17:04:12.260378Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.260446Z] Version included by the application program = 5 [2018-01-24T17:04:12.260459Z] [2018-01-24T17:04:12.260547Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.260587Z] with the CFITSIO library. [2018-01-24T17:04:12.260985Z] _______________________ MaskedImageTestCase.testFitsRead _______________________ [2018-01-24T17:04:12.261103Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.261139Z] [2018-01-24T17:04:12.261249Z] self = [2018-01-24T17:04:12.261266Z] [2018-01-24T17:04:12.261310Z] def setUp(self): [2018-01-24T17:04:12.261397Z] # Set a (non-standard) initial Mask plane definition [2018-01-24T17:04:12.261421Z] # [2018-01-24T17:04:12.261521Z] # Ideally we'd use the standard dictionary and a non-standard file, but [2018-01-24T17:04:12.261588Z] # a standard file's what we have [2018-01-24T17:04:12.261617Z] # [2018-01-24T17:04:12.261676Z] self.Mask = afwImage.Mask [2018-01-24T17:04:12.261723Z] mask = self.Mask() [2018-01-24T17:04:12.261741Z] [2018-01-24T17:04:12.261811Z] # Store the default mask planes for later use [2018-01-24T17:04:12.261882Z] maskPlaneDict = self.Mask().getMaskPlaneDict() [2018-01-24T17:04:12.261938Z] self.defaultMaskPlanes = sorted( [2018-01-24T17:04:12.262012Z] maskPlaneDict, key=maskPlaneDict.__getitem__) [2018-01-24T17:04:12.262029Z] [2018-01-24T17:04:12.262090Z] # reset so tests will be deterministic [2018-01-24T17:04:12.262144Z] self.Mask.clearMaskPlaneDict() [2018-01-24T17:04:12.262225Z] for p in ("ZERO", "BAD", "SAT", "INTRP", "CR", "EDGE"): [2018-01-24T17:04:12.262272Z] mask.addMaskPlane(p) [2018-01-24T17:04:12.262289Z] [2018-01-24T17:04:12.262335Z] if dataDir is not None: [2018-01-24T17:04:12.262370Z] if False: [2018-01-24T17:04:12.262458Z] self.fileName = os.path.join(dataDir, "Small_MI.fits") [2018-01-24T17:04:12.262488Z] else: [2018-01-24T17:04:12.262549Z] self.fileName = os.path.join( [2018-01-24T17:04:12.262659Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.262746Z] > self.mi = afwImage.MaskedImageF(self.fileName) [2018-01-24T17:04:12.262786Z] E FitsError: [2018-01-24T17:04:12.262935Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.263160Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.263209Z] E cfitsio error stack: [2018-01-24T17:04:12.263239Z] E {0} [2018-01-24T17:04:12.263490Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.263552Z] E cfitsio error stack: [2018-01-24T17:04:12.263578Z] E ' [2018-01-24T17:04:12.263590Z] [2018-01-24T17:04:12.263647Z] tests/test_maskedImageIO.py:91: FitsError [2018-01-24T17:04:12.263760Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.263785Z] [2018-01-24T17:04:12.263875Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.263970Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.264039Z] that was used when compiling the application program: [2018-01-24T17:04:12.264119Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.264187Z] Version included by the application program = 5 [2018-01-24T17:04:12.264200Z] [2018-01-24T17:04:12.264288Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.264328Z] with the CFITSIO library. [2018-01-24T17:04:12.264925Z] ___________________ MaskedImageTestCase.testFitsReadConform ____________________ [2018-01-24T17:04:12.265095Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.265115Z] [2018-01-24T17:04:12.265236Z] self = [2018-01-24T17:04:12.265264Z] [2018-01-24T17:04:12.265301Z] def setUp(self): [2018-01-24T17:04:12.265380Z] # Set a (non-standard) initial Mask plane definition [2018-01-24T17:04:12.265403Z] # [2018-01-24T17:04:12.265514Z] # Ideally we'd use the standard dictionary and a non-standard file, but [2018-01-24T17:04:12.265584Z] # a standard file's what we have [2018-01-24T17:04:12.265608Z] # [2018-01-24T17:04:12.265658Z] self.Mask = afwImage.Mask [2018-01-24T17:04:12.265710Z] mask = self.Mask() [2018-01-24T17:04:12.265750Z] [2018-01-24T17:04:12.265826Z] # Store the default mask planes for later use [2018-01-24T17:04:12.265898Z] maskPlaneDict = self.Mask().getMaskPlaneDict() [2018-01-24T17:04:12.265954Z] self.defaultMaskPlanes = sorted( [2018-01-24T17:04:12.266029Z] maskPlaneDict, key=maskPlaneDict.__getitem__) [2018-01-24T17:04:12.266045Z] [2018-01-24T17:04:12.266107Z] # reset so tests will be deterministic [2018-01-24T17:04:12.266161Z] self.Mask.clearMaskPlaneDict() [2018-01-24T17:04:12.266242Z] for p in ("ZERO", "BAD", "SAT", "INTRP", "CR", "EDGE"): [2018-01-24T17:04:12.266289Z] mask.addMaskPlane(p) [2018-01-24T17:04:12.266306Z] [2018-01-24T17:04:12.266351Z] if dataDir is not None: [2018-01-24T17:04:12.266387Z] if False: [2018-01-24T17:04:12.266475Z] self.fileName = os.path.join(dataDir, "Small_MI.fits") [2018-01-24T17:04:12.266506Z] else: [2018-01-24T17:04:12.266567Z] self.fileName = os.path.join( [2018-01-24T17:04:12.266657Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.266732Z] > self.mi = afwImage.MaskedImageF(self.fileName) [2018-01-24T17:04:12.266770Z] E FitsError: [2018-01-24T17:04:12.266943Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.267157Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.267207Z] E cfitsio error stack: [2018-01-24T17:04:12.267237Z] E {0} [2018-01-24T17:04:12.267475Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.267525Z] E cfitsio error stack: [2018-01-24T17:04:12.267551Z] E ' [2018-01-24T17:04:12.267563Z] [2018-01-24T17:04:12.267620Z] tests/test_maskedImageIO.py:91: FitsError [2018-01-24T17:04:12.267720Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.267733Z] [2018-01-24T17:04:12.267823Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.267919Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.267989Z] that was used when compiling the application program: [2018-01-24T17:04:12.268056Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.268123Z] Version included by the application program = 5 [2018-01-24T17:04:12.268135Z] [2018-01-24T17:04:12.268222Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.268262Z] with the CFITSIO library. [2018-01-24T17:04:12.268789Z] ___________________ MaskedImageTestCase.testFitsReadConform2 ___________________ [2018-01-24T17:04:12.268906Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.268935Z] [2018-01-24T17:04:12.269039Z] self = [2018-01-24T17:04:12.269053Z] [2018-01-24T17:04:12.269088Z] def setUp(self): [2018-01-24T17:04:12.269168Z] # Set a (non-standard) initial Mask plane definition [2018-01-24T17:04:12.269193Z] # [2018-01-24T17:04:12.269313Z] # Ideally we'd use the standard dictionary and a non-standard file, but [2018-01-24T17:04:12.269375Z] # a standard file's what we have [2018-01-24T17:04:12.269398Z] # [2018-01-24T17:04:12.269457Z] self.Mask = afwImage.Mask [2018-01-24T17:04:12.269510Z] mask = self.Mask() [2018-01-24T17:04:12.269528Z] [2018-01-24T17:04:12.269598Z] # Store the default mask planes for later use [2018-01-24T17:04:12.269674Z] maskPlaneDict = self.Mask().getMaskPlaneDict() [2018-01-24T17:04:12.269731Z] self.defaultMaskPlanes = sorted( [2018-01-24T17:04:12.269806Z] maskPlaneDict, key=maskPlaneDict.__getitem__) [2018-01-24T17:04:12.269823Z] [2018-01-24T17:04:12.269885Z] # reset so tests will be deterministic [2018-01-24T17:04:12.269938Z] self.Mask.clearMaskPlaneDict() [2018-01-24T17:04:12.270019Z] for p in ("ZERO", "BAD", "SAT", "INTRP", "CR", "EDGE"): [2018-01-24T17:04:12.270066Z] mask.addMaskPlane(p) [2018-01-24T17:04:12.270083Z] [2018-01-24T17:04:12.270128Z] if dataDir is not None: [2018-01-24T17:04:12.270163Z] if False: [2018-01-24T17:04:12.270251Z] self.fileName = os.path.join(dataDir, "Small_MI.fits") [2018-01-24T17:04:12.270281Z] else: [2018-01-24T17:04:12.270348Z] self.fileName = os.path.join( [2018-01-24T17:04:12.270437Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.270513Z] > self.mi = afwImage.MaskedImageF(self.fileName) [2018-01-24T17:04:12.270550Z] E FitsError: [2018-01-24T17:04:12.270694Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.270913Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.270978Z] E cfitsio error stack: [2018-01-24T17:04:12.271009Z] E {0} [2018-01-24T17:04:12.271253Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.271302Z] E cfitsio error stack: [2018-01-24T17:04:12.271330Z] E ' [2018-01-24T17:04:12.271342Z] [2018-01-24T17:04:12.271401Z] tests/test_maskedImageIO.py:91: FitsError [2018-01-24T17:04:12.271502Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.271515Z] [2018-01-24T17:04:12.271607Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.271706Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.271777Z] that was used when compiling the application program: [2018-01-24T17:04:12.271845Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.271914Z] Version included by the application program = 5 [2018-01-24T17:04:12.271927Z] [2018-01-24T17:04:12.272015Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.272055Z] with the CFITSIO library. [2018-01-24T17:04:12.272653Z] ________________________ MaskTestCase.testReadWriteXY0 _________________________ [2018-01-24T17:04:12.272774Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.272798Z] [2018-01-24T17:04:12.272880Z] self = [2018-01-24T17:04:12.272894Z] [2018-01-24T17:04:12.272941Z] def testReadWriteXY0(self): [2018-01-24T17:04:12.273019Z] """Test that we read and write (X0, Y0) correctly""" [2018-01-24T17:04:12.273091Z] mask = afwImage.Mask(afwGeom.ExtentI(10, 20)) [2018-01-24T17:04:12.273108Z] [2018-01-24T17:04:12.273144Z] x0, y0 = 1, 2 [2018-01-24T17:04:12.273186Z] mask.setXY0(x0, y0) [2018-01-24T17:04:12.273278Z] with utilsTests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.273337Z] mask.writeFits(tmpFile) [2018-01-24T17:04:12.273356Z] [2018-01-24T17:04:12.273430Z] > mask2 = mask.Factory(tmpFile) [2018-01-24T17:04:12.273447Z] [2018-01-24T17:04:12.273495Z] tests/test_mask.py:278: [2018-01-24T17:04:12.273606Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.273620Z] [2018-01-24T17:04:12.273701Z] self = [2018-01-24T17:04:12.273814Z] args = ('/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_mask_testReadWriteXY0-Yl9CvQ.fits',) [2018-01-24T17:04:12.273839Z] kwargs = {} [2018-01-24T17:04:12.273852Z] [2018-01-24T17:04:12.273906Z] def Factory(self, *args, **kwargs): [2018-01-24T17:04:12.273962Z] """Return an object of this type [2018-01-24T17:04:12.273990Z] """ [2018-01-24T17:04:12.274040Z] > return cls(*args, **kwargs) [2018-01-24T17:04:12.274073Z] E FitsError: [2018-01-24T17:04:12.274213Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.274417Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_mask_testReadWriteXY0-Yl9CvQ.fits' with mode 'r' [2018-01-24T17:04:12.274462Z] E cfitsio error stack: [2018-01-24T17:04:12.274487Z] E {0} [2018-01-24T17:04:12.274718Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_mask_testReadWriteXY0-Yl9CvQ.fits' with mode 'r' [2018-01-24T17:04:12.274762Z] E cfitsio error stack: [2018-01-24T17:04:12.274810Z] E ' [2018-01-24T17:04:12.274826Z] [2018-01-24T17:04:12.274890Z] python/lsst/afw/image/slicing.py:104: FitsError [2018-01-24T17:04:12.274989Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.275001Z] [2018-01-24T17:04:12.275092Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.275202Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.275273Z] that was used when compiling the application program: [2018-01-24T17:04:12.275342Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.275411Z] Version included by the application program = 5 [2018-01-24T17:04:12.275423Z] [2018-01-24T17:04:12.275512Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.275552Z] with the CFITSIO library. [2018-01-24T17:04:12.276573Z] _____________________ MaskedImageTestCase.testReadWriteXY0 _____________________ [2018-01-24T17:04:12.276696Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.276719Z] [2018-01-24T17:04:12.276831Z] self = [2018-01-24T17:04:12.276845Z] [2018-01-24T17:04:12.276895Z] def setUp(self): [2018-01-24T17:04:12.276988Z] # Set a (non-standard) initial Mask plane definition [2018-01-24T17:04:12.277026Z] # [2018-01-24T17:04:12.277177Z] # Ideally we'd use the standard dictionary and a non-standard file, but [2018-01-24T17:04:12.277277Z] # a standard file's what we have [2018-01-24T17:04:12.277309Z] # [2018-01-24T17:04:12.277371Z] self.Mask = afwImage.Mask [2018-01-24T17:04:12.277427Z] mask = self.Mask() [2018-01-24T17:04:12.277447Z] [2018-01-24T17:04:12.277519Z] # Store the default mask planes for later use [2018-01-24T17:04:12.277603Z] maskPlaneDict = self.Mask().getMaskPlaneDict() [2018-01-24T17:04:12.277659Z] self.defaultMaskPlanes = sorted( [2018-01-24T17:04:12.277733Z] maskPlaneDict, key=maskPlaneDict.__getitem__) [2018-01-24T17:04:12.277750Z] [2018-01-24T17:04:12.277812Z] # reset so tests will be deterministic [2018-01-24T17:04:12.277865Z] self.Mask.clearMaskPlaneDict() [2018-01-24T17:04:12.277946Z] for p in ("ZERO", "BAD", "SAT", "INTRP", "CR", "EDGE"): [2018-01-24T17:04:12.277993Z] mask.addMaskPlane(p) [2018-01-24T17:04:12.278011Z] [2018-01-24T17:04:12.278056Z] if dataDir is not None: [2018-01-24T17:04:12.278091Z] if False: [2018-01-24T17:04:12.278180Z] self.fileName = os.path.join(dataDir, "Small_MI.fits") [2018-01-24T17:04:12.278210Z] else: [2018-01-24T17:04:12.278271Z] self.fileName = os.path.join( [2018-01-24T17:04:12.278360Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.278435Z] > self.mi = afwImage.MaskedImageF(self.fileName) [2018-01-24T17:04:12.278472Z] E FitsError: [2018-01-24T17:04:12.278617Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.278826Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.278876Z] E cfitsio error stack: [2018-01-24T17:04:12.278906Z] E {0} [2018-01-24T17:04:12.279142Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.279191Z] E cfitsio error stack: [2018-01-24T17:04:12.279217Z] E ' [2018-01-24T17:04:12.279229Z] [2018-01-24T17:04:12.279285Z] tests/test_maskedImageIO.py:91: FitsError [2018-01-24T17:04:12.279396Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.279424Z] [2018-01-24T17:04:12.279516Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.279615Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.279687Z] that was used when compiling the application program: [2018-01-24T17:04:12.279767Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.279833Z] Version included by the application program = 5 [2018-01-24T17:04:12.279846Z] [2018-01-24T17:04:12.279931Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.279971Z] with the CFITSIO library. [2018-01-24T17:04:12.280513Z] ________ ExposureMultiExtensionTestCase.testUnreadbleOptionalExtensions ________ [2018-01-24T17:04:12.280651Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.280676Z] [2018-01-24T17:04:12.280834Z] self = [2018-01-24T17:04:12.280853Z] [2018-01-24T17:04:12.280951Z] def testUnreadbleOptionalExtensions(self): [2018-01-24T17:04:12.281024Z] # Test for case 2.2.2 above. [2018-01-24T17:04:12.281079Z] # Unreadable mask. [2018-01-24T17:04:12.281237Z] with tmpFits(None, np.array([[1]]), None, np.array([[3]])) as fitsfile: [2018-01-24T17:04:12.281354Z] > self._checkImage(self._constructImage(fitsfile), 1, 1, 1, 0, 3) [2018-01-24T17:04:12.281373Z] [2018-01-24T17:04:12.281424Z] tests/test_maskedImageIO.py:289: [2018-01-24T17:04:12.281538Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.281551Z] [2018-01-24T17:04:12.281684Z] self = [2018-01-24T17:04:12.281779Z] filename = '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpMQgU5j/test.fits' [2018-01-24T17:04:12.281822Z] hdu = None, needAllHdus = False [2018-01-24T17:04:12.281834Z] [2018-01-24T17:04:12.281916Z] def _constructImage(self, filename, hdu=None, needAllHdus=False): [2018-01-24T17:04:12.282007Z] # Construct an instance of ExposureF by loading from filename. If hdu [2018-01-24T17:04:12.282098Z] # is specified, load that HDU specifically. needAllHdus exists for API [2018-01-24T17:04:12.282206Z] # compatibility, but should always be False. This function exists only [2018-01-24T17:04:12.282302Z] # to stub default arguments into the constructor for parameters which [2018-01-24T17:04:12.282377Z] # we are not exercising in this test. [2018-01-24T17:04:12.282406Z] if hdu: [2018-01-24T17:04:12.282475Z] filename = "%s[%d]" % (filename, hdu) [2018-01-24T17:04:12.282513Z] if needAllHdus: [2018-01-24T17:04:12.282596Z] raise Exception("Cannot needAllHdus with Exposure") [2018-01-24T17:04:12.282657Z] > return afwImage.ExposureF(filename) [2018-01-24T17:04:12.282690Z] E FitsError: [2018-01-24T17:04:12.282852Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.283046Z] E cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpMQgU5j/test.fits' with mode 'r' [2018-01-24T17:04:12.283090Z] E cfitsio error stack: [2018-01-24T17:04:12.283115Z] E {0} [2018-01-24T17:04:12.283331Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpMQgU5j/test.fits' with mode 'r' [2018-01-24T17:04:12.283387Z] E cfitsio error stack: [2018-01-24T17:04:12.283408Z] E ' [2018-01-24T17:04:12.283419Z] [2018-01-24T17:04:12.283473Z] tests/test_maskedImageIO.py:368: FitsError [2018-01-24T17:04:12.283567Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.283603Z] [2018-01-24T17:04:12.283692Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.283783Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.283865Z] that was used when compiling the application program: [2018-01-24T17:04:12.283931Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.283999Z] Version included by the application program = 5 [2018-01-24T17:04:12.284011Z] [2018-01-24T17:04:12.284112Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.284152Z] with the CFITSIO library. [2018-01-24T17:04:12.284572Z] ______________________ MaskedImageTestCase.testTicket617 _______________________ [2018-01-24T17:04:12.284701Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.284725Z] [2018-01-24T17:04:12.284823Z] self = [2018-01-24T17:04:12.284837Z] [2018-01-24T17:04:12.284899Z] def setUp(self): [2018-01-24T17:04:12.285004Z] # Set a (non-standard) initial Mask plane definition [2018-01-24T17:04:12.285037Z] # [2018-01-24T17:04:12.285140Z] # Ideally we'd use the standard dictionary and a non-standard file, but [2018-01-24T17:04:12.285197Z] # a standard file's what we have [2018-01-24T17:04:12.285220Z] # [2018-01-24T17:04:12.285280Z] self.Mask = afwImage.Mask [2018-01-24T17:04:12.285334Z] mask = self.Mask() [2018-01-24T17:04:12.285354Z] [2018-01-24T17:04:12.285438Z] # Store the default mask planes for later use [2018-01-24T17:04:12.285518Z] maskPlaneDict = self.Mask().getMaskPlaneDict() [2018-01-24T17:04:12.285575Z] self.defaultMaskPlanes = sorted( [2018-01-24T17:04:12.285652Z] maskPlaneDict, key=maskPlaneDict.__getitem__) [2018-01-24T17:04:12.285669Z] [2018-01-24T17:04:12.285732Z] # reset so tests will be deterministic [2018-01-24T17:04:12.285786Z] self.Mask.clearMaskPlaneDict() [2018-01-24T17:04:12.285867Z] for p in ("ZERO", "BAD", "SAT", "INTRP", "CR", "EDGE"): [2018-01-24T17:04:12.285914Z] mask.addMaskPlane(p) [2018-01-24T17:04:12.285930Z] [2018-01-24T17:04:12.285976Z] if dataDir is not None: [2018-01-24T17:04:12.286011Z] if False: [2018-01-24T17:04:12.286100Z] self.fileName = os.path.join(dataDir, "Small_MI.fits") [2018-01-24T17:04:12.286132Z] else: [2018-01-24T17:04:12.286193Z] self.fileName = os.path.join( [2018-01-24T17:04:12.286283Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.286358Z] > self.mi = afwImage.MaskedImageF(self.fileName) [2018-01-24T17:04:12.286396Z] E FitsError: [2018-01-24T17:04:12.286541Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.286752Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.286801Z] E cfitsio error stack: [2018-01-24T17:04:12.286831Z] E {0} [2018-01-24T17:04:12.287069Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.287118Z] E cfitsio error stack: [2018-01-24T17:04:12.287145Z] E ' [2018-01-24T17:04:12.287157Z] [2018-01-24T17:04:12.287214Z] tests/test_maskedImageIO.py:91: FitsError [2018-01-24T17:04:12.287313Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.287326Z] [2018-01-24T17:04:12.287416Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.287513Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.287583Z] that was used when compiling the application program: [2018-01-24T17:04:12.287650Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.287718Z] Version included by the application program = 5 [2018-01-24T17:04:12.287730Z] [2018-01-24T17:04:12.287816Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.287856Z] with the CFITSIO library. [2018-01-24T17:04:12.288478Z] ____________________ MaskedImageTestCase.testFitsReadImage _____________________ [2018-01-24T17:04:12.288650Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.288678Z] [2018-01-24T17:04:12.288795Z] self = [2018-01-24T17:04:12.288821Z] [2018-01-24T17:04:12.288858Z] def setUp(self): [2018-01-24T17:04:12.288941Z] # Set a (non-standard) initial Mask plane definition [2018-01-24T17:04:12.288965Z] # [2018-01-24T17:04:12.289095Z] # Ideally we'd use the standard dictionary and a non-standard file, but [2018-01-24T17:04:12.289173Z] # a standard file's what we have [2018-01-24T17:04:12.289205Z] # [2018-01-24T17:04:12.289288Z] self.Mask = afwImage.Mask [2018-01-24T17:04:12.289345Z] mask = self.Mask() [2018-01-24T17:04:12.289365Z] [2018-01-24T17:04:12.289438Z] # Store the default mask planes for later use [2018-01-24T17:04:12.289512Z] maskPlaneDict = self.Mask().getMaskPlaneDict() [2018-01-24T17:04:12.289570Z] self.defaultMaskPlanes = sorted( [2018-01-24T17:04:12.289646Z] maskPlaneDict, key=maskPlaneDict.__getitem__) [2018-01-24T17:04:12.289663Z] [2018-01-24T17:04:12.289727Z] # reset so tests will be deterministic [2018-01-24T17:04:12.289782Z] self.Mask.clearMaskPlaneDict() [2018-01-24T17:04:12.289866Z] for p in ("ZERO", "BAD", "SAT", "INTRP", "CR", "EDGE"): [2018-01-24T17:04:12.289914Z] mask.addMaskPlane(p) [2018-01-24T17:04:12.289931Z] [2018-01-24T17:04:12.289978Z] if dataDir is not None: [2018-01-24T17:04:12.290014Z] if False: [2018-01-24T17:04:12.290105Z] self.fileName = os.path.join(dataDir, "Small_MI.fits") [2018-01-24T17:04:12.290136Z] else: [2018-01-24T17:04:12.290211Z] self.fileName = os.path.join( [2018-01-24T17:04:12.290302Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.290378Z] > self.mi = afwImage.MaskedImageF(self.fileName) [2018-01-24T17:04:12.290415Z] E FitsError: [2018-01-24T17:04:12.290560Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.290771Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.290820Z] E cfitsio error stack: [2018-01-24T17:04:12.290849Z] E {0} [2018-01-24T17:04:12.291087Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.291135Z] E cfitsio error stack: [2018-01-24T17:04:12.291162Z] E ' [2018-01-24T17:04:12.291174Z] [2018-01-24T17:04:12.291231Z] tests/test_maskedImageIO.py:91: FitsError [2018-01-24T17:04:12.291330Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.291342Z] [2018-01-24T17:04:12.291433Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.291528Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.291598Z] that was used when compiling the application program: [2018-01-24T17:04:12.291691Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.291761Z] Version included by the application program = 5 [2018-01-24T17:04:12.291774Z] [2018-01-24T17:04:12.291860Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.291900Z] with the CFITSIO library. [2018-01-24T17:04:12.292390Z] __________________________ MaskTestCase.testWriteFits __________________________ [2018-01-24T17:04:12.292509Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.292528Z] [2018-01-24T17:04:12.292618Z] self = [2018-01-24T17:04:12.292635Z] [2018-01-24T17:04:12.292715Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.292760Z] def testWriteFits(self): [2018-01-24T17:04:12.292827Z] nMaskPlanes0 = self.Mask.getNumPlanesUsed() [2018-01-24T17:04:12.292890Z] > mask = self.Mask(self.maskFile, hdu=2) [2018-01-24T17:04:12.292923Z] E FitsError: [2018-01-24T17:04:12.293078Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.293273Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.293320Z] E cfitsio error stack: [2018-01-24T17:04:12.293346Z] E {0} [2018-01-24T17:04:12.293569Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.293614Z] E cfitsio error stack: [2018-01-24T17:04:12.293637Z] E ' [2018-01-24T17:04:12.293649Z] [2018-01-24T17:04:12.293698Z] tests/test_mask.py:249: FitsError [2018-01-24T17:04:12.293800Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.293813Z] [2018-01-24T17:04:12.293906Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.294005Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.294077Z] that was used when compiling the application program: [2018-01-24T17:04:12.294145Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.294214Z] Version included by the application program = 5 [2018-01-24T17:04:12.294226Z] [2018-01-24T17:04:12.294315Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.294355Z] with the CFITSIO library. [2018-01-24T17:04:12.295934Z] ___________________________ ReadFitsTestCase.testMEF ___________________________ [2018-01-24T17:04:12.296093Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.296123Z] [2018-01-24T17:04:12.296218Z] self = [2018-01-24T17:04:12.296241Z] [2018-01-24T17:04:12.296280Z] def testMEF(self): [2018-01-24T17:04:12.296422Z] """Test writing a set of images to an MEF fits file, and then reading them back [2018-01-24T17:04:12.296456Z] [2018-01-24T17:04:12.296567Z] We disable compression to avoid the empty PHU that comes when writing FITS [2018-01-24T17:04:12.296614Z] compressed images. [2018-01-24T17:04:12.296643Z] """ [2018-01-24T17:04:12.296769Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile, afwFits.imageCompressionDisabled(): [2018-01-24T17:04:12.296847Z] im = afwImage.ImageF(afwGeom.Extent2I(20, 20)) [2018-01-24T17:04:12.296865Z] [2018-01-24T17:04:12.296913Z] for hdu in range(4): [2018-01-24T17:04:12.296972Z] im.set(100*hdu) [2018-01-24T17:04:12.297014Z] if hdu == 0: [2018-01-24T17:04:12.297058Z] mode = "w" [2018-01-24T17:04:12.297092Z] else: [2018-01-24T17:04:12.297137Z] mode = "a" [2018-01-24T17:04:12.297202Z] > im.writeFits(tmpFile, None, mode) [2018-01-24T17:04:12.297243Z] E FitsError: [2018-01-24T17:04:12.297392Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.297613Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo1_testMEF-M8yAtX.fits' with mode 'a' [2018-01-24T17:04:12.297668Z] E cfitsio error stack: [2018-01-24T17:04:12.297703Z] E {0} [2018-01-24T17:04:12.297942Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo1_testMEF-M8yAtX.fits' with mode 'a' [2018-01-24T17:04:12.297997Z] E cfitsio error stack: [2018-01-24T17:04:12.298028Z] E ' [2018-01-24T17:04:12.298041Z] [2018-01-24T17:04:12.298094Z] tests/test_imageIo1.py:137: FitsError [2018-01-24T17:04:12.298195Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.298208Z] [2018-01-24T17:04:12.298300Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.298398Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.298470Z] that was used when compiling the application program: [2018-01-24T17:04:12.298538Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.298606Z] Version included by the application program = 5 [2018-01-24T17:04:12.298619Z] [2018-01-24T17:04:12.298707Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.298748Z] with the CFITSIO library. [2018-01-24T17:04:12.299693Z] _________________ MaskedMultiExtensionTestCase.testNeedAllHdus _________________ [2018-01-24T17:04:12.299806Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.299821Z] [2018-01-24T17:04:12.300014Z] self = [2018-01-24T17:04:12.300031Z] [2018-01-24T17:04:12.300077Z] def testNeedAllHdus(self): [2018-01-24T17:04:12.300154Z] # Tests for cases 1.1 & 1.2.2 above. [2018-01-24T17:04:12.300239Z] # We'll regard it as ok for the user to specify any of: [2018-01-24T17:04:12.300274Z] # * No HDU; [2018-01-24T17:04:12.300354Z] # * The "zeroeth" (primary) HDU; [2018-01-24T17:04:12.300443Z] # * The first (first extension) HDU. [2018-01-24T17:04:12.300547Z] # Any others should raise when needAllHdus is true [2018-01-24T17:04:12.300662Z] with tmpFits(None, np.array([[1]]), np.array([[2]], dtype=np.int16), [2018-01-24T17:04:12.300738Z] np.array([[3]])) as fitsfile: [2018-01-24T17:04:12.300794Z] # No HDU specified -> ok. [2018-01-24T17:04:12.300892Z] > self._checkImage(self._constructImage(fitsfile, needAllHdus=True), [2018-01-24T17:04:12.300952Z] 1, 1, 1, 2, 3) [2018-01-24T17:04:12.300964Z] [2018-01-24T17:04:12.301013Z] tests/test_maskedImageIO.py:322: [2018-01-24T17:04:12.301113Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.301126Z] [2018-01-24T17:04:12.301228Z] self = [2018-01-24T17:04:12.301330Z] filename = '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmphvxWF3/test.fits' [2018-01-24T17:04:12.301375Z] hdu = None, needAllHdus = True [2018-01-24T17:04:12.301387Z] [2018-01-24T17:04:12.301475Z] def _constructImage(self, filename, hdu=None, needAllHdus=False): [2018-01-24T17:04:12.301574Z] # Construct an instance of MaskedImageF by loading from filename. If hdu [2018-01-24T17:04:12.301669Z] # is specified, load that HDU specifically. Pass through needAllHdus [2018-01-24T17:04:12.301793Z] # to the MaskedImageF constructor. This function exists only to stub [2018-01-24T17:04:12.301891Z] # default arguments into the constructor for parameters which we are [2018-01-24T17:04:12.301946Z] # not exercising in this test. [2018-01-24T17:04:12.301976Z] if hdu: [2018-01-24T17:04:12.302041Z] filename = "%s[%d]" % (filename, hdu) [2018-01-24T17:04:12.302171Z] > return afwImage.MaskedImageF(filename, None, afwGeom.Box2I(), afwImage.PARENT, False, needAllHdus) [2018-01-24T17:04:12.302205Z] E FitsError: [2018-01-24T17:04:12.302347Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.302538Z] E cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmphvxWF3/test.fits' with mode 'r' [2018-01-24T17:04:12.302583Z] E cfitsio error stack: [2018-01-24T17:04:12.302609Z] E {0} [2018-01-24T17:04:12.302827Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmphvxWF3/test.fits' with mode 'r' [2018-01-24T17:04:12.302872Z] E cfitsio error stack: [2018-01-24T17:04:12.302894Z] E ' [2018-01-24T17:04:12.302906Z] [2018-01-24T17:04:12.302964Z] tests/test_maskedImageIO.py:307: FitsError [2018-01-24T17:04:12.303063Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.303076Z] [2018-01-24T17:04:12.303167Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.303263Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.303334Z] that was used when compiling the application program: [2018-01-24T17:04:12.303401Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.303468Z] Version included by the application program = 5 [2018-01-24T17:04:12.303480Z] [2018-01-24T17:04:12.303569Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.303610Z] with the CFITSIO library. [2018-01-24T17:04:12.303726Z] ___________________________ ReadFitsTestCase.testS16 ___________________________ [2018-01-24T17:04:12.303860Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.303883Z] [2018-01-24T17:04:12.303970Z] self = [2018-01-24T17:04:12.303990Z] [2018-01-24T17:04:12.304066Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.304103Z] def testS16(self): [2018-01-24T17:04:12.304154Z] """Test reading S16 image""" [2018-01-24T17:04:12.304246Z] > im = afwImage.ImageD(os.path.join(dataDir, "871034p_1_img.fits")) [2018-01-24T17:04:12.304279Z] E FitsError: [2018-01-24T17:04:12.304436Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.304636Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_img.fits' with mode 'r' [2018-01-24T17:04:12.304682Z] E cfitsio error stack: [2018-01-24T17:04:12.304709Z] E {0} [2018-01-24T17:04:12.304937Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_img.fits' with mode 'r' [2018-01-24T17:04:12.304982Z] E cfitsio error stack: [2018-01-24T17:04:12.305005Z] E ' [2018-01-24T17:04:12.305017Z] [2018-01-24T17:04:12.305069Z] tests/test_imageIo1.py:72: FitsError [2018-01-24T17:04:12.305171Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.305184Z] [2018-01-24T17:04:12.305278Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.305387Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.305457Z] that was used when compiling the application program: [2018-01-24T17:04:12.305523Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.305601Z] Version included by the application program = 5 [2018-01-24T17:04:12.305612Z] [2018-01-24T17:04:12.305693Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.305730Z] with the CFITSIO library. [2018-01-24T17:04:12.307090Z] __________________ MaskedImageTestCase.testFitsReadNoConform2 __________________ [2018-01-24T17:04:12.307263Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.307292Z] [2018-01-24T17:04:12.307402Z] self = [2018-01-24T17:04:12.307416Z] [2018-01-24T17:04:12.307453Z] def setUp(self): [2018-01-24T17:04:12.307567Z] # Set a (non-standard) initial Mask plane definition [2018-01-24T17:04:12.307594Z] # [2018-01-24T17:04:12.307695Z] # Ideally we'd use the standard dictionary and a non-standard file, but [2018-01-24T17:04:12.307752Z] # a standard file's what we have [2018-01-24T17:04:12.307775Z] # [2018-01-24T17:04:12.307843Z] self.Mask = afwImage.Mask [2018-01-24T17:04:12.307888Z] mask = self.Mask() [2018-01-24T17:04:12.307905Z] [2018-01-24T17:04:12.307992Z] # Store the default mask planes for later use [2018-01-24T17:04:12.308079Z] maskPlaneDict = self.Mask().getMaskPlaneDict() [2018-01-24T17:04:12.308137Z] self.defaultMaskPlanes = sorted( [2018-01-24T17:04:12.308213Z] maskPlaneDict, key=maskPlaneDict.__getitem__) [2018-01-24T17:04:12.308231Z] [2018-01-24T17:04:12.308294Z] # reset so tests will be deterministic [2018-01-24T17:04:12.308362Z] self.Mask.clearMaskPlaneDict() [2018-01-24T17:04:12.308443Z] for p in ("ZERO", "BAD", "SAT", "INTRP", "CR", "EDGE"): [2018-01-24T17:04:12.308490Z] mask.addMaskPlane(p) [2018-01-24T17:04:12.308507Z] [2018-01-24T17:04:12.308552Z] if dataDir is not None: [2018-01-24T17:04:12.308587Z] if False: [2018-01-24T17:04:12.308675Z] self.fileName = os.path.join(dataDir, "Small_MI.fits") [2018-01-24T17:04:12.308706Z] else: [2018-01-24T17:04:12.308767Z] self.fileName = os.path.join( [2018-01-24T17:04:12.308856Z] dataDir, "CFHT", "D4", "cal-53535-i-797722_1.fits") [2018-01-24T17:04:12.308932Z] > self.mi = afwImage.MaskedImageF(self.fileName) [2018-01-24T17:04:12.308969Z] E FitsError: [2018-01-24T17:04:12.309114Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.309325Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.309375Z] E cfitsio error stack: [2018-01-24T17:04:12.309405Z] E {0} [2018-01-24T17:04:12.309643Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/CFHT/D4/cal-53535-i-797722_1.fits' with mode 'r' [2018-01-24T17:04:12.309691Z] E cfitsio error stack: [2018-01-24T17:04:12.309718Z] E ' [2018-01-24T17:04:12.309730Z] [2018-01-24T17:04:12.309786Z] tests/test_maskedImageIO.py:91: FitsError [2018-01-24T17:04:12.309886Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.309898Z] [2018-01-24T17:04:12.309988Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.310084Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.310154Z] that was used when compiling the application program: [2018-01-24T17:04:12.310248Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.310318Z] Version included by the application program = 5 [2018-01-24T17:04:12.310331Z] [2018-01-24T17:04:12.310417Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.310457Z] with the CFITSIO library. [2018-01-24T17:04:12.311032Z] ________________________ ReadFitsTestCase.testSubimage _________________________ [2018-01-24T17:04:12.311142Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.311156Z] [2018-01-24T17:04:12.311269Z] self = [2018-01-24T17:04:12.311287Z] [2018-01-24T17:04:12.311376Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.311433Z] def testSubimage(self): [2018-01-24T17:04:12.311494Z] """Test reading a subimage image""" [2018-01-24T17:04:12.311582Z] fileName, hdu = os.path.join(dataDir, "871034p_1_MI.fits"), 3 [2018-01-24T17:04:12.311642Z] > im = afwImage.ImageF(fileName, hdu) [2018-01-24T17:04:12.311674Z] E FitsError: [2018-01-24T17:04:12.311815Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.312022Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.312064Z] E cfitsio error stack: [2018-01-24T17:04:12.312088Z] E {0} [2018-01-24T17:04:12.312297Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.312339Z] E cfitsio error stack: [2018-01-24T17:04:12.312360Z] E ' [2018-01-24T17:04:12.312371Z] [2018-01-24T17:04:12.312435Z] tests/test_imageIo1.py:108: FitsError [2018-01-24T17:04:12.312534Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.312547Z] [2018-01-24T17:04:12.312638Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.312733Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.312804Z] that was used when compiling the application program: [2018-01-24T17:04:12.312885Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.312953Z] Version included by the application program = 5 [2018-01-24T17:04:12.312966Z] [2018-01-24T17:04:12.313054Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.313095Z] with the CFITSIO library. [2018-01-24T17:04:12.314498Z] ___________________________ ReadFitsTestCase.testU16 ___________________________ [2018-01-24T17:04:12.314626Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.314655Z] [2018-01-24T17:04:12.314737Z] self = [2018-01-24T17:04:12.314751Z] [2018-01-24T17:04:12.314844Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.314911Z] def testU16(self): [2018-01-24T17:04:12.314978Z] """Test reading U16 image""" [2018-01-24T17:04:12.314997Z] [2018-01-24T17:04:12.315087Z] > im = afwImage.ImageD(os.path.join(dataDir, "small_img.fits")) [2018-01-24T17:04:12.315121Z] E FitsError: [2018-01-24T17:04:12.315266Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.315462Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.315508Z] E cfitsio error stack: [2018-01-24T17:04:12.315535Z] E {0} [2018-01-24T17:04:12.315765Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.315809Z] E cfitsio error stack: [2018-01-24T17:04:12.315831Z] E ' [2018-01-24T17:04:12.315843Z] [2018-01-24T17:04:12.315894Z] tests/test_imageIo1.py:64: FitsError [2018-01-24T17:04:12.315993Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.316005Z] [2018-01-24T17:04:12.316100Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.316197Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.316267Z] that was used when compiling the application program: [2018-01-24T17:04:12.316334Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.316400Z] Version included by the application program = 5 [2018-01-24T17:04:12.316412Z] [2018-01-24T17:04:12.316498Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.316537Z] with the CFITSIO library. [2018-01-24T17:04:12.318004Z] _____________ MaskedImagePersistenceTestCase.testBoostPersistence ______________ [2018-01-24T17:04:12.318140Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.318164Z] [2018-01-24T17:04:12.318319Z] self = [2018-01-24T17:04:12.318343Z] [2018-01-24T17:04:12.318380Z] def setUp(self): [2018-01-24T17:04:12.318446Z] # Create the additionalData PropertySet [2018-01-24T17:04:12.318550Z] self.additionalData = dafBase.PropertySet() [2018-01-24T17:04:12.318645Z] self.additionalData.addInt("sliceId", 0) [2018-01-24T17:04:12.318735Z] self.additionalData.addString("visitId", "fov391") [2018-01-24T17:04:12.318830Z] self.additionalData.addInt("universeSize", 100) [2018-01-24T17:04:12.318905Z] self.additionalData.addString("itemName", "foo") [2018-01-24T17:04:12.318923Z] [2018-01-24T17:04:12.318971Z] # Create an empty Policy [2018-01-24T17:04:12.319022Z] policy = pexPolicy.Policy() [2018-01-24T17:04:12.319039Z] [2018-01-24T17:04:12.319090Z] # Get a Persistence object [2018-01-24T17:04:12.319191Z] self.persistence = dafPers.Persistence.getPersistence(policy) [2018-01-24T17:04:12.319208Z] [2018-01-24T17:04:12.319260Z] # Choose a file to manipulate [2018-01-24T17:04:12.319306Z] if dataDir is not None: [2018-01-24T17:04:12.319387Z] self.infile = os.path.join(dataDir, "small_MI.fits") [2018-01-24T17:04:12.319416Z] [2018-01-24T17:04:12.319501Z] > self.maskedImage = afwImage.MaskedImageF(self.infile) [2018-01-24T17:04:12.319540Z] E FitsError: [2018-01-24T17:04:12.319689Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.319896Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.319945Z] E cfitsio error stack: [2018-01-24T17:04:12.319975Z] E {0} [2018-01-24T17:04:12.320194Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.320242Z] E cfitsio error stack: [2018-01-24T17:04:12.320268Z] E ' [2018-01-24T17:04:12.320280Z] [2018-01-24T17:04:12.320347Z] tests/test_maskedImagePersistence1.py:63: FitsError [2018-01-24T17:04:12.320445Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.320458Z] [2018-01-24T17:04:12.320547Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.320642Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.320738Z] that was used when compiling the application program: [2018-01-24T17:04:12.320808Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.320875Z] Version included by the application program = 5 [2018-01-24T17:04:12.320887Z] [2018-01-24T17:04:12.320972Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.321012Z] with the CFITSIO library. [2018-01-24T17:04:12.321845Z] __________ MaskedMultiExtensionTestCase.testReadableExtensionAsImage ___________ [2018-01-24T17:04:12.322013Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.322042Z] [2018-01-24T17:04:12.322168Z] self = [2018-01-24T17:04:12.322182Z] [2018-01-24T17:04:12.322260Z] def testReadableExtensionAsImage(self): [2018-01-24T17:04:12.322330Z] # Test for case 2.1.2 above. [2018-01-24T17:04:12.322474Z] with tmpFits(None, np.array([[1]]), np.array([[2]], dtype=np.int16), [2018-01-24T17:04:12.322564Z] np.array([[3]])) as fitsfile: [2018-01-24T17:04:12.322669Z] > self._checkImage(self._constructImage(fitsfile, 3), 1, 1, 3, 0, 0) [2018-01-24T17:04:12.322684Z] [2018-01-24T17:04:12.322735Z] tests/test_maskedImageIO.py:278: [2018-01-24T17:04:12.322839Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.322852Z] [2018-01-24T17:04:12.322972Z] self = [2018-01-24T17:04:12.323080Z] filename = '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpWr6NCF/test.fits[3]' [2018-01-24T17:04:12.323125Z] hdu = 3, needAllHdus = False [2018-01-24T17:04:12.323138Z] [2018-01-24T17:04:12.323228Z] def _constructImage(self, filename, hdu=None, needAllHdus=False): [2018-01-24T17:04:12.323331Z] # Construct an instance of MaskedImageF by loading from filename. If hdu [2018-01-24T17:04:12.323431Z] # is specified, load that HDU specifically. Pass through needAllHdus [2018-01-24T17:04:12.323531Z] # to the MaskedImageF constructor. This function exists only to stub [2018-01-24T17:04:12.323629Z] # default arguments into the constructor for parameters which we are [2018-01-24T17:04:12.323685Z] # not exercising in this test. [2018-01-24T17:04:12.323715Z] if hdu: [2018-01-24T17:04:12.323783Z] filename = "%s[%d]" % (filename, hdu) [2018-01-24T17:04:12.323915Z] > return afwImage.MaskedImageF(filename, None, afwGeom.Box2I(), afwImage.PARENT, False, needAllHdus) [2018-01-24T17:04:12.323962Z] E FitsError: [2018-01-24T17:04:12.324103Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.324298Z] E cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpWr6NCF/test.fits[3]' with mode 'r' [2018-01-24T17:04:12.324343Z] E cfitsio error stack: [2018-01-24T17:04:12.324368Z] E {0} [2018-01-24T17:04:12.324590Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmpWr6NCF/test.fits[3]' with mode 'r' [2018-01-24T17:04:12.324634Z] E cfitsio error stack: [2018-01-24T17:04:12.324656Z] E ' [2018-01-24T17:04:12.324668Z] [2018-01-24T17:04:12.324726Z] tests/test_maskedImageIO.py:307: FitsError [2018-01-24T17:04:12.324826Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.324838Z] [2018-01-24T17:04:12.324929Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.325026Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.325097Z] that was used when compiling the application program: [2018-01-24T17:04:12.325164Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.325232Z] Version included by the application program = 5 [2018-01-24T17:04:12.325244Z] [2018-01-24T17:04:12.325331Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.325371Z] with the CFITSIO library. [2018-01-24T17:04:12.325797Z] ______________ MaskedImagePersistenceTestCase.testFitsPersistence ______________ [2018-01-24T17:04:12.325930Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.325957Z] [2018-01-24T17:04:12.326103Z] self = [2018-01-24T17:04:12.326121Z] [2018-01-24T17:04:12.326179Z] def setUp(self): [2018-01-24T17:04:12.326254Z] # Create the additionalData PropertySet [2018-01-24T17:04:12.326345Z] self.additionalData = dafBase.PropertySet() [2018-01-24T17:04:12.326415Z] self.additionalData.addInt("sliceId", 0) [2018-01-24T17:04:12.326503Z] self.additionalData.addString("visitId", "fov391") [2018-01-24T17:04:12.326585Z] self.additionalData.addInt("universeSize", 100) [2018-01-24T17:04:12.326659Z] self.additionalData.addString("itemName", "foo") [2018-01-24T17:04:12.326676Z] [2018-01-24T17:04:12.326724Z] # Create an empty Policy [2018-01-24T17:04:12.326775Z] policy = pexPolicy.Policy() [2018-01-24T17:04:12.326792Z] [2018-01-24T17:04:12.326841Z] # Get a Persistence object [2018-01-24T17:04:12.326930Z] self.persistence = dafPers.Persistence.getPersistence(policy) [2018-01-24T17:04:12.326947Z] [2018-01-24T17:04:12.326999Z] # Choose a file to manipulate [2018-01-24T17:04:12.327047Z] if dataDir is not None: [2018-01-24T17:04:12.327129Z] self.infile = os.path.join(dataDir, "small_MI.fits") [2018-01-24T17:04:12.327146Z] [2018-01-24T17:04:12.327230Z] > self.maskedImage = afwImage.MaskedImageF(self.infile) [2018-01-24T17:04:12.327267Z] E FitsError: [2018-01-24T17:04:12.327414Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.327610Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.327659Z] E cfitsio error stack: [2018-01-24T17:04:12.327689Z] E {0} [2018-01-24T17:04:12.327911Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.327960Z] E cfitsio error stack: [2018-01-24T17:04:12.327986Z] E ' [2018-01-24T17:04:12.327998Z] [2018-01-24T17:04:12.328066Z] tests/test_maskedImagePersistence1.py:63: FitsError [2018-01-24T17:04:12.328167Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.328179Z] [2018-01-24T17:04:12.328271Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.328368Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.328438Z] that was used when compiling the application program: [2018-01-24T17:04:12.328505Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.328572Z] Version included by the application program = 5 [2018-01-24T17:04:12.328584Z] [2018-01-24T17:04:12.328671Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.328711Z] with the CFITSIO library. [2018-01-24T17:04:12.329523Z] ______________________ PhotoCalibTestCase.testPersistence ______________________ [2018-01-24T17:04:12.329643Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.329670Z] [2018-01-24T17:04:12.329781Z] self = [2018-01-24T17:04:12.329823Z] [2018-01-24T17:04:12.329886Z] def testPersistence(self): [2018-01-24T17:04:12.330001Z] photoCalib = lsst.afw.image.PhotoCalib(self.calibration) [2018-01-24T17:04:12.330062Z] > self._testPersistence(photoCalib) [2018-01-24T17:04:12.330075Z] [2018-01-24T17:04:12.330130Z] tests/test_photoCalib.py:327: [2018-01-24T17:04:12.330237Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.330250Z] [2018-01-24T17:04:12.330337Z] self = [2018-01-24T17:04:12.330423Z] photoCalib = PhotoCalib(spatially constant with mean: 0.001 err: 0) [2018-01-24T17:04:12.330436Z] [2018-01-24T17:04:12.330494Z] def _testPersistence(self, photoCalib): [2018-01-24T17:04:12.330593Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.330652Z] photoCalib.writeFits(filename) [2018-01-24T17:04:12.330737Z] > result = lsst.afw.image.PhotoCalib.readFits(filename) [2018-01-24T17:04:12.330775Z] E FitsError: [2018-01-24T17:04:12.330923Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.331143Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_photoCalib_testPersistence-pESqf1.fits' with mode 'r' [2018-01-24T17:04:12.331193Z] E cfitsio error stack: [2018-01-24T17:04:12.331224Z] E {0} [2018-01-24T17:04:12.331470Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_photoCalib_testPersistence-pESqf1.fits' with mode 'r' [2018-01-24T17:04:12.331519Z] E cfitsio error stack: [2018-01-24T17:04:12.331546Z] E ' [2018-01-24T17:04:12.331559Z] [2018-01-24T17:04:12.331614Z] tests/test_photoCalib.py:322: FitsError [2018-01-24T17:04:12.331716Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.331729Z] [2018-01-24T17:04:12.331822Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.331920Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.332004Z] that was used when compiling the application program: [2018-01-24T17:04:12.332093Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.332162Z] Version included by the application program = 5 [2018-01-24T17:04:12.332175Z] [2018-01-24T17:04:12.332262Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.332302Z] with the CFITSIO library. [2018-01-24T17:04:12.333359Z] ___________________________ MatchFitsTestCase.testIO ___________________________ [2018-01-24T17:04:12.333495Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.333521Z] [2018-01-24T17:04:12.333619Z] self = [2018-01-24T17:04:12.333647Z] [2018-01-24T17:04:12.333686Z] def testIO(self): [2018-01-24T17:04:12.333757Z] packed = afwTable.packMatches(self.matches) [2018-01-24T17:04:12.333856Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.333910Z] packed.writeFits(filename) [2018-01-24T17:04:12.333988Z] > matches = afwTable.BaseCatalog.readFits(filename) [2018-01-24T17:04:12.334025Z] E FitsError: [2018-01-24T17:04:12.334168Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.334370Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_matchFits_testIO-WhjFfv.fits' with mode 'r' [2018-01-24T17:04:12.334418Z] E cfitsio error stack: [2018-01-24T17:04:12.334448Z] E {0} [2018-01-24T17:04:12.334676Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_matchFits_testIO-WhjFfv.fits' with mode 'r' [2018-01-24T17:04:12.334725Z] E cfitsio error stack: [2018-01-24T17:04:12.334751Z] E ' [2018-01-24T17:04:12.334764Z] [2018-01-24T17:04:12.334815Z] tests/test_matchFits.py:83: FitsError [2018-01-24T17:04:12.334913Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.334926Z] [2018-01-24T17:04:12.335015Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.335110Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.335180Z] that was used when compiling the application program: [2018-01-24T17:04:12.335246Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.335312Z] Version included by the application program = 5 [2018-01-24T17:04:12.335325Z] [2018-01-24T17:04:12.335410Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.335450Z] with the CFITSIO library. [2018-01-24T17:04:12.336853Z] ________________________ ReadFitsTestCase.testWriteBool ________________________ [2018-01-24T17:04:12.336975Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.337002Z] [2018-01-24T17:04:12.337104Z] self = [2018-01-24T17:04:12.337120Z] [2018-01-24T17:04:12.337178Z] def testWriteBool(self): [2018-01-24T17:04:12.337252Z] """Test that we can read and write bools""" [2018-01-24T17:04:12.337320Z] import lsst.afw.image as afwImage [2018-01-24T17:04:12.337391Z] import lsst.daf.base as dafBase [2018-01-24T17:04:12.337410Z] [2018-01-24T17:04:12.337495Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.337570Z] im = afwImage.ImageF(afwGeom.ExtentI(10, 20)) [2018-01-24T17:04:12.337625Z] md = dafBase.PropertySet() [2018-01-24T17:04:12.337674Z] keys = {"BAD": False, [2018-01-24T17:04:12.337722Z] "GOOD": True, [2018-01-24T17:04:12.337757Z] } [2018-01-24T17:04:12.337810Z] for k, v in keys.items(): [2018-01-24T17:04:12.337853Z] md.add(k, v) [2018-01-24T17:04:12.337870Z] [2018-01-24T17:04:12.337935Z] im.writeFits(tmpFile, md) [2018-01-24T17:04:12.337952Z] [2018-01-24T17:04:12.338022Z] > jim = afwImage.DecoratedImageF(tmpFile) [2018-01-24T17:04:12.338061Z] E FitsError: [2018-01-24T17:04:12.338211Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.338430Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo1_testWriteBool-6uXcwk.fits' with mode 'r' [2018-01-24T17:04:12.338480Z] E cfitsio error stack: [2018-01-24T17:04:12.338511Z] E {0} [2018-01-24T17:04:12.338756Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo1_testWriteBool-6uXcwk.fits' with mode 'r' [2018-01-24T17:04:12.338806Z] E cfitsio error stack: [2018-01-24T17:04:12.338833Z] E ' [2018-01-24T17:04:12.338846Z] [2018-01-24T17:04:12.338900Z] tests/test_imageIo1.py:159: FitsError [2018-01-24T17:04:12.339003Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.339016Z] [2018-01-24T17:04:12.339108Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.339208Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.339280Z] that was used when compiling the application program: [2018-01-24T17:04:12.339375Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.339448Z] Version included by the application program = 5 [2018-01-24T17:04:12.339461Z] [2018-01-24T17:04:12.339551Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.339592Z] with the CFITSIO library. [2018-01-24T17:04:12.340507Z] _____________ PropertyListPersistenceTestCase.testFitsPersistence ______________ [2018-01-24T17:04:12.340640Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.340668Z] [2018-01-24T17:04:12.340812Z] self = [2018-01-24T17:04:12.340837Z] [2018-01-24T17:04:12.340902Z] def testFitsPersistence(self): [2018-01-24T17:04:12.340977Z] """Test unpersisting from FITS""" [2018-01-24T17:04:12.340997Z] [2018-01-24T17:04:12.341053Z] # Set up the LogicalLocation. [2018-01-24T17:04:12.341134Z] logicalLocation = dafPers.LogicalLocation( [2018-01-24T17:04:12.341233Z] os.path.join("tests", "data", "HSC-0908120-056-small.fits")) [2018-01-24T17:04:12.341251Z] [2018-01-24T17:04:12.341330Z] # Create a FitsStorage and put it in a StorageList. [2018-01-24T17:04:12.341404Z] storage = self.persistence.getRetrieveStorage( [2018-01-24T17:04:12.341465Z] "FitsStorage", logicalLocation) [2018-01-24T17:04:12.341535Z] storageList = dafPers.StorageList([storage]) [2018-01-24T17:04:12.341553Z] [2018-01-24T17:04:12.341602Z] # Let's do the retrieval! [2018-01-24T17:04:12.341676Z] propertyList = self.persistence.unsafeRetrieve( [2018-01-24T17:04:12.341739Z] > "PropertyList", storageList, None) [2018-01-24T17:04:12.341773Z] E FitsError: [2018-01-24T17:04:12.341918Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.342077Z] E cfitsio error: could not open the named file (104) : Opening file 'tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.342122Z] E cfitsio error stack: [2018-01-24T17:04:12.342148Z] E {0} [2018-01-24T17:04:12.342342Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file 'tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.342386Z] E cfitsio error stack: [2018-01-24T17:04:12.342408Z] E ' [2018-01-24T17:04:12.342420Z] [2018-01-24T17:04:12.342499Z] tests/test_propertyListPersistence.py:59: FitsError [2018-01-24T17:04:12.342592Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.342605Z] [2018-01-24T17:04:12.342690Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.342780Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.342846Z] that was used when compiling the application program: [2018-01-24T17:04:12.342908Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.342987Z] Version included by the application program = 5 [2018-01-24T17:04:12.342999Z] [2018-01-24T17:04:12.343084Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.343123Z] with the CFITSIO library. [2018-01-24T17:04:12.344255Z] _________ MaskedMultiExtensionTestCase.testUnreadbleOptionalExtensions _________ [2018-01-24T17:04:12.344406Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.344430Z] [2018-01-24T17:04:12.344556Z] self = [2018-01-24T17:04:12.344569Z] [2018-01-24T17:04:12.344656Z] def testUnreadbleOptionalExtensions(self): [2018-01-24T17:04:12.344730Z] # Test for case 2.2.2 above. [2018-01-24T17:04:12.344789Z] # Unreadable mask. [2018-01-24T17:04:12.344953Z] with tmpFits(None, np.array([[1]]), None, np.array([[3]])) as fitsfile: [2018-01-24T17:04:12.345077Z] > self._checkImage(self._constructImage(fitsfile), 1, 1, 1, 0, 3) [2018-01-24T17:04:12.345094Z] [2018-01-24T17:04:12.345144Z] tests/test_maskedImageIO.py:289: [2018-01-24T17:04:12.345243Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.345256Z] [2018-01-24T17:04:12.345376Z] self = [2018-01-24T17:04:12.345477Z] filename = '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmps7GdKb/test.fits' [2018-01-24T17:04:12.345523Z] hdu = None, needAllHdus = False [2018-01-24T17:04:12.345535Z] [2018-01-24T17:04:12.345622Z] def _constructImage(self, filename, hdu=None, needAllHdus=False): [2018-01-24T17:04:12.345721Z] # Construct an instance of MaskedImageF by loading from filename. If hdu [2018-01-24T17:04:12.345816Z] # is specified, load that HDU specifically. Pass through needAllHdus [2018-01-24T17:04:12.345911Z] # to the MaskedImageF constructor. This function exists only to stub [2018-01-24T17:04:12.346019Z] # default arguments into the constructor for parameters which we are [2018-01-24T17:04:12.346070Z] # not exercising in this test. [2018-01-24T17:04:12.346097Z] if hdu: [2018-01-24T17:04:12.346171Z] filename = "%s[%d]" % (filename, hdu) [2018-01-24T17:04:12.346315Z] > return afwImage.MaskedImageF(filename, None, afwGeom.Box2I(), afwImage.PARENT, False, needAllHdus) [2018-01-24T17:04:12.346349Z] E FitsError: [2018-01-24T17:04:12.346495Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.346690Z] E cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmps7GdKb/test.fits' with mode 'r' [2018-01-24T17:04:12.346748Z] E cfitsio error stack: [2018-01-24T17:04:12.346774Z] E {0} [2018-01-24T17:04:12.346990Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/var/folders/cr/6mtr09kc8xj40b0059b98ffh0000gn/T/tmps7GdKb/test.fits' with mode 'r' [2018-01-24T17:04:12.347034Z] E cfitsio error stack: [2018-01-24T17:04:12.347056Z] E ' [2018-01-24T17:04:12.347068Z] [2018-01-24T17:04:12.347126Z] tests/test_maskedImageIO.py:307: FitsError [2018-01-24T17:04:12.347224Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.347237Z] [2018-01-24T17:04:12.347327Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.347423Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.347508Z] that was used when compiling the application program: [2018-01-24T17:04:12.347577Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.347645Z] Version included by the application program = 5 [2018-01-24T17:04:12.347659Z] [2018-01-24T17:04:12.347747Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.347788Z] with the CFITSIO library. [2018-01-24T17:04:12.348315Z] _____________________ ExposureTestCase.testDeepCopySubData _____________________ [2018-01-24T17:04:12.348463Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.348489Z] [2018-01-24T17:04:12.348584Z] self = [2018-01-24T17:04:12.348598Z] [2018-01-24T17:04:12.348633Z] def setUp(self): [2018-01-24T17:04:12.348725Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.348758Z] E FitsError: [2018-01-24T17:04:12.348899Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.349090Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.349160Z] E cfitsio error stack: [2018-01-24T17:04:12.349189Z] E {0} [2018-01-24T17:04:12.349407Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.349452Z] E cfitsio error stack: [2018-01-24T17:04:12.349474Z] E ' [2018-01-24T17:04:12.349487Z] [2018-01-24T17:04:12.349539Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.349638Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.349651Z] [2018-01-24T17:04:12.349742Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.349838Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.349908Z] that was used when compiling the application program: [2018-01-24T17:04:12.349975Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.350042Z] Version included by the application program = 5 [2018-01-24T17:04:12.350054Z] [2018-01-24T17:04:12.350140Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.350180Z] with the CFITSIO library. [2018-01-24T17:04:12.351743Z] _______________________ ExposureTestCase.testTicket2861 ________________________ [2018-01-24T17:04:12.351869Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.351899Z] [2018-01-24T17:04:12.351989Z] self = [2018-01-24T17:04:12.352016Z] [2018-01-24T17:04:12.352051Z] def setUp(self): [2018-01-24T17:04:12.352140Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.352184Z] E FitsError: [2018-01-24T17:04:12.352325Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.352529Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.352571Z] E cfitsio error stack: [2018-01-24T17:04:12.352596Z] E {0} [2018-01-24T17:04:12.352801Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.352843Z] E cfitsio error stack: [2018-01-24T17:04:12.352864Z] E ' [2018-01-24T17:04:12.352875Z] [2018-01-24T17:04:12.352924Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.353048Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.353060Z] [2018-01-24T17:04:12.353154Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.353253Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.353337Z] that was used when compiling the application program: [2018-01-24T17:04:12.353414Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.353477Z] Version included by the application program = 5 [2018-01-24T17:04:12.353488Z] [2018-01-24T17:04:12.353570Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.353608Z] with the CFITSIO library. [2018-01-24T17:04:12.355182Z] ______________________ ReadFitsTestCase.testWriteReadF64 _______________________ [2018-01-24T17:04:12.355296Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.355312Z] [2018-01-24T17:04:12.355427Z] self = [2018-01-24T17:04:12.355454Z] [2018-01-24T17:04:12.355519Z] def testWriteReadF64(self): [2018-01-24T17:04:12.355619Z] """Test writing then reading an F64 image""" [2018-01-24T17:04:12.355720Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.355802Z] im = afwImage.ImageD(afwGeom.Extent2I(100, 100)) [2018-01-24T17:04:12.355841Z] im.set(666) [2018-01-24T17:04:12.355890Z] im.writeFits(tmpFile) [2018-01-24T17:04:12.355943Z] > afwImage.ImageD(tmpFile) [2018-01-24T17:04:12.355982Z] E FitsError: [2018-01-24T17:04:12.356132Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.356352Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo1_testWriteReadF64-BsYZiy.fits' with mode 'r' [2018-01-24T17:04:12.356404Z] E cfitsio error stack: [2018-01-24T17:04:12.356435Z] E {0} [2018-01-24T17:04:12.356682Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo1_testWriteReadF64-BsYZiy.fits' with mode 'r' [2018-01-24T17:04:12.356733Z] E cfitsio error stack: [2018-01-24T17:04:12.356760Z] E ' [2018-01-24T17:04:12.356772Z] [2018-01-24T17:04:12.356826Z] tests/test_imageIo1.py:102: FitsError [2018-01-24T17:04:12.356939Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.356952Z] [2018-01-24T17:04:12.357058Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.357157Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.357229Z] that was used when compiling the application program: [2018-01-24T17:04:12.357298Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.357378Z] Version included by the application program = 5 [2018-01-24T17:04:12.357391Z] [2018-01-24T17:04:12.357478Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.357517Z] with the CFITSIO library. [2018-01-24T17:04:12.358774Z] _____________ SimpleTableTestCase.testCompoundFieldFitsConversion ______________ [2018-01-24T17:04:12.358943Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.358972Z] [2018-01-24T17:04:12.359109Z] self = [2018-01-24T17:04:12.359129Z] [2018-01-24T17:04:12.359222Z] def testCompoundFieldFitsConversion(self): [2018-01-24T17:04:12.359361Z] """Test that we convert compound fields saved with an older version of the pipeline [2018-01-24T17:04:12.359492Z] into the set of multiple fields used by their replacement FunctorKeys. [2018-01-24T17:04:12.359535Z] """ [2018-01-24T17:04:12.359575Z] geomValues = { [2018-01-24T17:04:12.359636Z] "point_i_x": 4, "point_i_y": 5, [2018-01-24T17:04:12.359716Z] "point_d_x": 3.5, "point_d_y": 2.0, [2018-01-24T17:04:12.359822Z] "moments_xx": 5.0, "moments_yy": 6.5, "moments_xy": 2.25, [2018-01-24T17:04:12.359938Z] "coord_ra": 1.0*lsst.afw.geom.radians, "coord_dec": 0.5*lsst.afw.geom.radians, [2018-01-24T17:04:12.359961Z] } [2018-01-24T17:04:12.359997Z] covValues = { [2018-01-24T17:04:12.360072Z] "cov_z": np.array([[4.00, 1.25, 1.50, 0.75], [2018-01-24T17:04:12.360148Z] [1.25, 2.25, 0.50, 0.25], [2018-01-24T17:04:12.360223Z] [1.50, 0.50, 6.25, 1.75], [2018-01-24T17:04:12.360331Z] [0.75, 0.25, 1.75, 9.00]], dtype=np.float32), [2018-01-24T17:04:12.360391Z] "cov_p": np.array([[5.50, -2.0], [2018-01-24T17:04:12.360473Z] [-2.0, 3.25]], dtype=np.float32), [2018-01-24T17:04:12.360540Z] "cov_m": np.array([[3.75, -0.5, 1.25], [2018-01-24T17:04:12.360606Z] [-0.5, 4.50, 0.75], [2018-01-24T17:04:12.360694Z] [1.25, 0.75, 6.25]], dtype=np.float32), [2018-01-24T17:04:12.360742Z] } [2018-01-24T17:04:12.360822Z] filename = os.path.join(os.path.split(__file__)[0], [2018-01-24T17:04:12.360912Z] "data", "CompoundFieldConversion.fits") [2018-01-24T17:04:12.360989Z] > cat2 = lsst.afw.table.BaseCatalog.readFits(filename) [2018-01-24T17:04:12.361022Z] E FitsError: [2018-01-24T17:04:12.361163Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.361354Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/CompoundFieldConversion.fits' with mode 'r' [2018-01-24T17:04:12.361398Z] E cfitsio error stack: [2018-01-24T17:04:12.361423Z] E {0} [2018-01-24T17:04:12.361641Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/CompoundFieldConversion.fits' with mode 'r' [2018-01-24T17:04:12.361685Z] E cfitsio error stack: [2018-01-24T17:04:12.361707Z] E ' [2018-01-24T17:04:12.361719Z] [2018-01-24T17:04:12.361774Z] tests/test_simpleTable.py:748: FitsError [2018-01-24T17:04:12.361873Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.361886Z] [2018-01-24T17:04:12.361975Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.362071Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.362141Z] that was used when compiling the application program: [2018-01-24T17:04:12.362207Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.362274Z] Version included by the application program = 5 [2018-01-24T17:04:12.362286Z] [2018-01-24T17:04:12.362372Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.362411Z] with the CFITSIO library. [2018-01-24T17:04:12.362723Z] ________________________ SimpleTableTestCase.testDM352 _________________________ [2018-01-24T17:04:12.362832Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.362855Z] [2018-01-24T17:04:12.362967Z] self = [2018-01-24T17:04:12.362989Z] [2018-01-24T17:04:12.363031Z] def testDM352(self): [2018-01-24T17:04:12.363129Z] filename = os.path.join(os.path.split(__file__)[0], [2018-01-24T17:04:12.363205Z] "data", "great3.fits") [2018-01-24T17:04:12.363284Z] > cat = lsst.afw.table.BaseCatalog.readFits(filename) [2018-01-24T17:04:12.363318Z] E FitsError: [2018-01-24T17:04:12.363462Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.363639Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/great3.fits' with mode 'r' [2018-01-24T17:04:12.363685Z] E cfitsio error stack: [2018-01-24T17:04:12.363711Z] E {0} [2018-01-24T17:04:12.363919Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/great3.fits' with mode 'r' [2018-01-24T17:04:12.363966Z] E cfitsio error stack: [2018-01-24T17:04:12.363989Z] E ' [2018-01-24T17:04:12.364001Z] [2018-01-24T17:04:12.364058Z] tests/test_simpleTable.py:635: FitsError [2018-01-24T17:04:12.364160Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.364173Z] [2018-01-24T17:04:12.364266Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.364364Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.364437Z] that was used when compiling the application program: [2018-01-24T17:04:12.364505Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.364574Z] Version included by the application program = 5 [2018-01-24T17:04:12.364587Z] [2018-01-24T17:04:12.364675Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.364716Z] with the CFITSIO library. [2018-01-24T17:04:12.366233Z] ____________ SourceTableTestCase.testFitsReadBackwardsCompatibility ____________ [2018-01-24T17:04:12.366352Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.366376Z] [2018-01-24T17:04:12.366509Z] self = [2018-01-24T17:04:12.366527Z] [2018-01-24T17:04:12.366610Z] def testFitsReadBackwardsCompatibility(self): [2018-01-24T17:04:12.366683Z] cat = lsst.afw.table.SourceCatalog.readFits( [2018-01-24T17:04:12.366773Z] > os.path.join(testPath, "data/empty-v0.fits")) [2018-01-24T17:04:12.366807Z] E FitsError: [2018-01-24T17:04:12.366951Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.367140Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/empty-v0.fits' with mode 'r' [2018-01-24T17:04:12.367184Z] E cfitsio error stack: [2018-01-24T17:04:12.367209Z] E {0} [2018-01-24T17:04:12.367409Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/empty-v0.fits' with mode 'r' [2018-01-24T17:04:12.367453Z] E cfitsio error stack: [2018-01-24T17:04:12.367476Z] E ' [2018-01-24T17:04:12.367488Z] [2018-01-24T17:04:12.367543Z] tests/test_sourceTable.py:451: FitsError [2018-01-24T17:04:12.367642Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.367654Z] [2018-01-24T17:04:12.367745Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.367841Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.367910Z] that was used when compiling the application program: [2018-01-24T17:04:12.367977Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.368043Z] Version included by the application program = 5 [2018-01-24T17:04:12.368055Z] [2018-01-24T17:04:12.368141Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.368180Z] with the CFITSIO library. [2018-01-24T17:04:12.369685Z] _______________________ TestTanSipTestCase.testReadFits ________________________ [2018-01-24T17:04:12.369808Z] [gw4] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.369827Z] [2018-01-24T17:04:12.369925Z] self = [2018-01-24T17:04:12.369941Z] [2018-01-24T17:04:12.369984Z] def testReadFits(self): [2018-01-24T17:04:12.370079Z] dataDir = os.path.join(os.path.split(__file__)[0], "data") [2018-01-24T17:04:12.370184Z] filePath = os.path.join(dataDir, "wcs-0007358-102.fits") [2018-01-24T17:04:12.370218Z] hdu = 1 [2018-01-24T17:04:12.370235Z] [2018-01-24T17:04:12.370300Z] > wcsMetadata = readMetadata(filePath, hdu) [2018-01-24T17:04:12.370333Z] E FitsError: [2018-01-24T17:04:12.370473Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.370653Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/wcs-0007358-102.fits' with mode 'r' [2018-01-24T17:04:12.370698Z] E cfitsio error stack: [2018-01-24T17:04:12.370723Z] E {0} [2018-01-24T17:04:12.370930Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/wcs-0007358-102.fits' with mode 'r' [2018-01-24T17:04:12.370974Z] E cfitsio error stack: [2018-01-24T17:04:12.371023Z] E ' [2018-01-24T17:04:12.371039Z] [2018-01-24T17:04:12.371089Z] tests/test_skyWcs.py:727: FitsError [2018-01-24T17:04:12.371188Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.371200Z] [2018-01-24T17:04:12.371290Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.371386Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.371455Z] that was used when compiling the application program: [2018-01-24T17:04:12.371521Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.371588Z] Version included by the application program = 5 [2018-01-24T17:04:12.371601Z] [2018-01-24T17:04:12.371686Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.371726Z] with the CFITSIO library. [2018-01-24T17:04:12.373219Z] _____________________________ WCSTestRaWrap.test1 ______________________________ [2018-01-24T17:04:12.373373Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.373392Z] [2018-01-24T17:04:12.373481Z] self = [2018-01-24T17:04:12.373498Z] [2018-01-24T17:04:12.373534Z] def test1(self): [2018-01-24T17:04:12.373632Z] wcsfn = os.path.join(self.datadir, 'imsim-v85518312-fu-R43-S12.wcs2') [2018-01-24T17:04:12.373692Z] > hdr = afwImage.readMetadata(wcsfn) [2018-01-24T17:04:12.373725Z] E FitsError: [2018-01-24T17:04:12.373869Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.374062Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/imsim-v85518312-fu-R43-S12.wcs2' with mode 'r' [2018-01-24T17:04:12.374107Z] E cfitsio error stack: [2018-01-24T17:04:12.374134Z] E {0} [2018-01-24T17:04:12.374364Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/imsim-v85518312-fu-R43-S12.wcs2' with mode 'r' [2018-01-24T17:04:12.374409Z] E cfitsio error stack: [2018-01-24T17:04:12.374431Z] E ' [2018-01-24T17:04:12.374443Z] [2018-01-24T17:04:12.374492Z] tests/test_raWrap.py:44: FitsError [2018-01-24T17:04:12.374591Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.374603Z] [2018-01-24T17:04:12.374697Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.374794Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.374863Z] that was used when compiling the application program: [2018-01-24T17:04:12.374930Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.374996Z] Version included by the application program = 5 [2018-01-24T17:04:12.375009Z] [2018-01-24T17:04:12.375094Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.375134Z] with the CFITSIO library. [2018-01-24T17:04:12.376609Z] ___________________ GetApproximateFitsWcsTestCase.testTanSip ___________________ [2018-01-24T17:04:12.376740Z] [gw2] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.376759Z] [2018-01-24T17:04:12.376853Z] self = [2018-01-24T17:04:12.376867Z] [2018-01-24T17:04:12.376908Z] def testTanSip(self): [2018-01-24T17:04:12.377034Z] filePath = os.path.join(self.dataPath, "HSC-0908120-056-small.fits") [2018-01-24T17:04:12.377157Z] # TODO: DM-10765 replace with the following when Exposure contains a SkyWcs: [2018-01-24T17:04:12.377216Z] # exposure = ExposureF(filePath) [2018-01-24T17:04:12.377267Z] # wcs = exposure.getWcs() [2018-01-24T17:04:12.377326Z] > metadata = readMetadata(filePath) [2018-01-24T17:04:12.377360Z] E FitsError: [2018-01-24T17:04:12.377505Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.377700Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.377746Z] E cfitsio error stack: [2018-01-24T17:04:12.377772Z] E {0} [2018-01-24T17:04:12.378001Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/HSC-0908120-056-small.fits' with mode 'r' [2018-01-24T17:04:12.378046Z] E cfitsio error stack: [2018-01-24T17:04:12.378068Z] E ' [2018-01-24T17:04:12.378081Z] [2018-01-24T17:04:12.378131Z] tests/test_skyWcs.py:813: FitsError [2018-01-24T17:04:12.378230Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.378243Z] [2018-01-24T17:04:12.378333Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.378429Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.378499Z] that was used when compiling the application program: [2018-01-24T17:04:12.378566Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.378632Z] Version included by the application program = 5 [2018-01-24T17:04:12.378644Z] [2018-01-24T17:04:12.378730Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.378770Z] with the CFITSIO library. [2018-01-24T17:04:12.380096Z] ____________________________ ImageIoTestCase.testIo ____________________________ [2018-01-24T17:04:12.380222Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.380237Z] [2018-01-24T17:04:12.380335Z] self = [2018-01-24T17:04:12.380352Z] [2018-01-24T17:04:12.380389Z] def testIo(self): [2018-01-24T17:04:12.380470Z] for Image in (afwImage.ImageU, [2018-01-24T17:04:12.380606Z] afwImage.ImageL, [2018-01-24T17:04:12.380679Z] afwImage.ImageI, [2018-01-24T17:04:12.380738Z] afwImage.ImageF, [2018-01-24T17:04:12.380794Z] afwImage.ImageD, [2018-01-24T17:04:12.380834Z] ): [2018-01-24T17:04:12.380899Z] image = Image(self.cols, self.rows) [2018-01-24T17:04:12.380958Z] for x in range(0, self.cols): [2018-01-24T17:04:12.381021Z] for y in range(0, self.rows): [2018-01-24T17:04:12.381081Z] image.set(x, y, x + y) [2018-01-24T17:04:12.381098Z] [2018-01-24T17:04:12.381218Z] with lsst.utils.tests.getTempFilePath("_%s.fits" % (Image.__name__,)) as filename: [2018-01-24T17:04:12.381277Z] image.writeFits(filename) [2018-01-24T17:04:12.381338Z] > readImage = Image(filename) [2018-01-24T17:04:12.381381Z] E FitsError: [2018-01-24T17:04:12.381536Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.381756Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo2_testIo-MpZfam_ImageU.fits' with mode 'r' [2018-01-24T17:04:12.381811Z] E cfitsio error stack: [2018-01-24T17:04:12.381846Z] E {0} [2018-01-24T17:04:12.382094Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_imageIo2_testIo-MpZfam_ImageU.fits' with mode 'r' [2018-01-24T17:04:12.382160Z] E cfitsio error stack: [2018-01-24T17:04:12.382191Z] E ' [2018-01-24T17:04:12.382203Z] [2018-01-24T17:04:12.382254Z] tests/test_imageIo2.py:64: FitsError [2018-01-24T17:04:12.382354Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.382393Z] [2018-01-24T17:04:12.382487Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.382584Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.382654Z] that was used when compiling the application program: [2018-01-24T17:04:12.382721Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.382789Z] Version included by the application program = 5 [2018-01-24T17:04:12.382801Z] [2018-01-24T17:04:12.382887Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.382927Z] with the CFITSIO library. [2018-01-24T17:04:12.383831Z] _______________ SourceTableTestCase.testOldFootprintPersistence ________________ [2018-01-24T17:04:12.383942Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.383957Z] [2018-01-24T17:04:12.384091Z] self = [2018-01-24T17:04:12.384114Z] [2018-01-24T17:04:12.384174Z] def testOldFootprintPersistence(self): [2018-01-24T17:04:12.384304Z] """Test that we can still read SourceCatalogs with (Heavy)Footprints saved by an older [2018-01-24T17:04:12.384397Z] version of the pipeline with a different format. [2018-01-24T17:04:12.384430Z] """ [2018-01-24T17:04:12.384495Z] filename = os.path.join(testPath, "data", [2018-01-24T17:04:12.384578Z] "old-footprint-persistence.fits") [2018-01-24T17:04:12.384662Z] > catalog1 = lsst.afw.table.SourceCatalog.readFits(filename) [2018-01-24T17:04:12.384696Z] E FitsError: [2018-01-24T17:04:12.384836Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.385029Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/old-footprint-persistence.fits' with mode 'r' [2018-01-24T17:04:12.385073Z] E cfitsio error stack: [2018-01-24T17:04:12.385099Z] E {0} [2018-01-24T17:04:12.385319Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/old-footprint-persistence.fits' with mode 'r' [2018-01-24T17:04:12.385364Z] E cfitsio error stack: [2018-01-24T17:04:12.385386Z] E ' [2018-01-24T17:04:12.385398Z] [2018-01-24T17:04:12.385453Z] tests/test_sourceTable.py:535: FitsError [2018-01-24T17:04:12.385552Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.385564Z] [2018-01-24T17:04:12.385654Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.385750Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.385820Z] that was used when compiling the application program: [2018-01-24T17:04:12.385887Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.385954Z] Version included by the application program = 5 [2018-01-24T17:04:12.385966Z] [2018-01-24T17:04:12.386052Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.386091Z] with the CFITSIO library. [2018-01-24T17:04:12.387342Z] ______________________ SourceTableTestCase.testFootprints ______________________ [2018-01-24T17:04:12.387472Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.387498Z] [2018-01-24T17:04:12.387593Z] self = [2018-01-24T17:04:12.387607Z] [2018-01-24T17:04:12.387666Z] def testFootprints(self): [2018-01-24T17:04:12.387811Z] '''Test round-tripping Footprints (inc. HeavyFootprints) to FITS [2018-01-24T17:04:12.387858Z] ''' [2018-01-24T17:04:12.387924Z] src1 = self.catalog.addNew() [2018-01-24T17:04:12.388006Z] src2 = self.catalog.addNew() [2018-01-24T17:04:12.388067Z] src3 = self.catalog.addNew() [2018-01-24T17:04:12.388126Z] self.fillRecord(src1) [2018-01-24T17:04:12.388184Z] self.fillRecord(src2) [2018-01-24T17:04:12.388231Z] self.fillRecord(src3) [2018-01-24T17:04:12.388301Z] src2.setParent(src1.getId()) [2018-01-24T17:04:12.388322Z] [2018-01-24T17:04:12.388361Z] W, H = 100, 100 [2018-01-24T17:04:12.388437Z] mim = lsst.afw.image.MaskedImageF(W, H) [2018-01-24T17:04:12.388487Z] im = mim.getImage() [2018-01-24T17:04:12.388530Z] msk = mim.getMask() [2018-01-24T17:04:12.388578Z] var = mim.getVariance() [2018-01-24T17:04:12.388619Z] for y in range(H): [2018-01-24T17:04:12.388665Z] for x in range(W): [2018-01-24T17:04:12.388731Z] im.set(x, y, y * 1e6 + x * 1e3) [2018-01-24T17:04:12.388791Z] msk.set(x, y, (y << 8) | x) [2018-01-24T17:04:12.388851Z] var.set(x, y, y * 1e2 + x) [2018-01-24T17:04:12.388943Z] spanSet = lsst.afw.geom.SpanSet.fromShape(20).shiftedBy(50, 50) [2018-01-24T17:04:12.389025Z] circ = lsst.afw.detection.Footprint(spanSet) [2018-01-24T17:04:12.389122Z] heavy = lsst.afw.detection.makeHeavyFootprint(circ, mim) [2018-01-24T17:04:12.389170Z] src2.setFootprint(heavy) [2018-01-24T17:04:12.389187Z] [2018-01-24T17:04:12.389251Z] for i, src in enumerate(self.catalog): [2018-01-24T17:04:12.389295Z] if src != src2: [2018-01-24T17:04:12.389384Z] spanSet = lsst.afw.geom.SpanSet.fromShape( [2018-01-24T17:04:12.389457Z] 1+i*2).shiftedBy(50, 50) [2018-01-24T17:04:12.389541Z] src.setFootprint(lsst.afw.detection.Footprint(spanSet)) [2018-01-24T17:04:12.389557Z] [2018-01-24T17:04:12.389665Z] # insert this HeavyFootprint into an otherwise blank image (for comparing the results) [2018-01-24T17:04:12.389726Z] mim2 = lsst.afw.image.MaskedImageF(W, H) [2018-01-24T17:04:12.389764Z] heavy.insert(mim2) [2018-01-24T17:04:12.389780Z] [2018-01-24T17:04:12.389854Z] with lsst.utils.tests.getTempFilePath(".fits") as fn: [2018-01-24T17:04:12.389918Z] self.catalog.writeFits(fn) [2018-01-24T17:04:12.389935Z] [2018-01-24T17:04:12.390012Z] > cat2 = lsst.afw.table.SourceCatalog.readFits(fn) [2018-01-24T17:04:12.390050Z] E FitsError: [2018-01-24T17:04:12.390195Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.390413Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_sourceTable_testFootprints-dq5QmA.fits' with mode 'r' [2018-01-24T17:04:12.390460Z] E cfitsio error stack: [2018-01-24T17:04:12.390488Z] E {0} [2018-01-24T17:04:12.390730Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_sourceTable_testFootprints-dq5QmA.fits' with mode 'r' [2018-01-24T17:04:12.390778Z] E cfitsio error stack: [2018-01-24T17:04:12.390805Z] E ' [2018-01-24T17:04:12.390817Z] [2018-01-24T17:04:12.390873Z] tests/test_sourceTable.py:343: FitsError [2018-01-24T17:04:12.390972Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.390984Z] [2018-01-24T17:04:12.391085Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.391176Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.391242Z] that was used when compiling the application program: [2018-01-24T17:04:12.391305Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.391369Z] Version included by the application program = 5 [2018-01-24T17:04:12.391381Z] [2018-01-24T17:04:12.391519Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.391605Z] with the CFITSIO library. [2018-01-24T17:04:12.391713Z] ______________________ SourceTableTestCase.testPersisted _______________________ [2018-01-24T17:04:12.391826Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.391843Z] [2018-01-24T17:04:12.391948Z] self = [2018-01-24T17:04:12.391962Z] [2018-01-24T17:04:12.392004Z] def testPersisted(self): [2018-01-24T17:04:12.392057Z] self.table.definePsfFlux("a") [2018-01-24T17:04:12.392121Z] self.table.defineCentroid("b") [2018-01-24T17:04:12.392169Z] self.table.defineShape("c") [2018-01-24T17:04:12.392249Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.392306Z] self.catalog.writeFits(filename) [2018-01-24T17:04:12.392403Z] > catalog = lsst.afw.table.SourceCatalog.readFits(filename) [2018-01-24T17:04:12.392441Z] E FitsError: [2018-01-24T17:04:12.392586Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.392809Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_sourceTable_testPersisted-Dvo0Od.fits' with mode 'r' [2018-01-24T17:04:12.392855Z] E cfitsio error stack: [2018-01-24T17:04:12.392884Z] E {0} [2018-01-24T17:04:12.393112Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_sourceTable_testPersisted-Dvo0Od.fits' with mode 'r' [2018-01-24T17:04:12.393158Z] E cfitsio error stack: [2018-01-24T17:04:12.393183Z] E ' [2018-01-24T17:04:12.393207Z] [2018-01-24T17:04:12.393263Z] tests/test_sourceTable.py:164: FitsError [2018-01-24T17:04:12.393363Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.393375Z] [2018-01-24T17:04:12.393465Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.393562Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.393632Z] that was used when compiling the application program: [2018-01-24T17:04:12.393699Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.393766Z] Version included by the application program = 5 [2018-01-24T17:04:12.393791Z] [2018-01-24T17:04:12.393879Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.393921Z] with the CFITSIO library. [2018-01-24T17:04:12.395047Z] _______________ SimpleTableTestCase.testUnsignedFitsPersistence ________________ [2018-01-24T17:04:12.395176Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.395196Z] [2018-01-24T17:04:12.395317Z] self = [2018-01-24T17:04:12.395342Z] [2018-01-24T17:04:12.395404Z] def testUnsignedFitsPersistence(self): [2018-01-24T17:04:12.395558Z] """Test FITS round-trip of unsigned short ints, since FITS handles unsigned columns differently [2018-01-24T17:04:12.395619Z] from signed columns [2018-01-24T17:04:12.395656Z] """ [2018-01-24T17:04:12.395714Z] schema = lsst.afw.table.Schema() [2018-01-24T17:04:12.395804Z] k1 = schema.addField("f1", type=np.uint16, doc="scalar uint16") [2018-01-24T17:04:12.395899Z] k2 = schema.addField("f2", type="ArrayU", doc="array uint16", size=4) [2018-01-24T17:04:12.395965Z] cat1 = lsst.afw.table.BaseCatalog(schema) [2018-01-24T17:04:12.396011Z] record1 = cat1.addNew() [2018-01-24T17:04:12.396052Z] record1.set(k1, 4) [2018-01-24T17:04:12.396133Z] record1.set(k2, np.array([5, 6, 7, 8], dtype=np.uint16)) [2018-01-24T17:04:12.396218Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.396275Z] cat1.writeFits(filename) [2018-01-24T17:04:12.396377Z] > cat2 = lsst.afw.table.BaseCatalog.readFits(filename) [2018-01-24T17:04:12.396417Z] E FitsError: [2018-01-24T17:04:12.396571Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.396806Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_simpleTable_testUnsignedFitsPersistence-vgUGQO.fits' with mode 'r' [2018-01-24T17:04:12.396856Z] E cfitsio error stack: [2018-01-24T17:04:12.396957Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.396989Z] E END [2018-01-24T17:04:12.397064Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.397095Z] E {0} [2018-01-24T17:04:12.397367Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_simpleTable_testUnsignedFitsPersistence-vgUGQO.fits' with mode 'r' [2018-01-24T17:04:12.397429Z] E cfitsio error stack: [2018-01-24T17:04:12.397556Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.397589Z] E END [2018-01-24T17:04:12.397664Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.397691Z] E ' [2018-01-24T17:04:12.397704Z] [2018-01-24T17:04:12.397761Z] tests/test_simpleTable.py:287: FitsError [2018-01-24T17:04:12.397874Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.397886Z] [2018-01-24T17:04:12.397991Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.398089Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.398161Z] that was used when compiling the application program: [2018-01-24T17:04:12.398229Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.398298Z] Version included by the application program = 5 [2018-01-24T17:04:12.398310Z] [2018-01-24T17:04:12.398409Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.398449Z] with the CFITSIO library. [2018-01-24T17:04:12.398954Z] _________________ SimpleTableTestCase.testVariableLengthArrays _________________ [2018-01-24T17:04:12.399067Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.399096Z] [2018-01-24T17:04:12.399209Z] self = [2018-01-24T17:04:12.399226Z] [2018-01-24T17:04:12.399294Z] def testVariableLengthArrays(self): [2018-01-24T17:04:12.399364Z] schema = lsst.afw.table.Schema() [2018-01-24T17:04:12.399496Z] kArrayB = schema.addField("fArrayB", doc="uint8", type="ArrayB", size=0) [2018-01-24T17:04:12.399612Z] kArrayU = schema.addField("fArrayU", doc="uint16", type="ArrayU", size=0) [2018-01-24T17:04:12.399762Z] kArrayI = schema.addField("fArrayI", doc="int32", type="ArrayI", size=0) [2018-01-24T17:04:12.399900Z] kArrayF = schema.addField("fArrayF", doc="single-precision", type="ArrayF") [2018-01-24T17:04:12.400021Z] kArrayD = schema.addField("fArrayD", doc="double-precision", type="ArrayD") [2018-01-24T17:04:12.400128Z] kString = schema.addField("fString", doc="string", type="String", size=0) [2018-01-24T17:04:12.400209Z] cat1 = lsst.afw.table.BaseCatalog(schema) [2018-01-24T17:04:12.400263Z] record1 = cat1.addNew() [2018-01-24T17:04:12.400365Z] self.assertEqual(list(record1.get(kArrayB)), []) [2018-01-24T17:04:12.400481Z] self.assertEqual(list(record1.get(kArrayU)), []) [2018-01-24T17:04:12.400561Z] self.assertEqual(list(record1.get(kArrayI)), []) [2018-01-24T17:04:12.400660Z] self.assertEqual(list(record1.get(kArrayF)), []) [2018-01-24T17:04:12.400784Z] self.assertEqual(list(record1.get(kArrayD)), []) [2018-01-24T17:04:12.400858Z] self.assertEqual(record1.get(kString), "") [2018-01-24T17:04:12.400954Z] dataB = np.random.randint(low=3, high=6, size=4).astype(np.uint8) [2018-01-24T17:04:12.401063Z] dataU = np.random.randint(low=3, high=6, size=4).astype(np.uint16) [2018-01-24T17:04:12.401164Z] dataI = np.random.randint(low=3, high=6, size=4).astype(np.int32) [2018-01-24T17:04:12.401232Z] dataF = np.random.randn(5).astype(np.float32) [2018-01-24T17:04:12.401299Z] dataD = np.random.randn(6).astype(np.float64) [2018-01-24T17:04:12.401381Z] dataString = "the\nquick\tbrown\rfox jumps over the lazy dog" [2018-01-24T17:04:12.401416Z] # Test get/set [2018-01-24T17:04:12.401478Z] record1.set(kArrayB, dataB) [2018-01-24T17:04:12.401529Z] record1.set(kArrayU, dataU) [2018-01-24T17:04:12.401580Z] record1.set(kArrayI, dataI) [2018-01-24T17:04:12.401630Z] record1.set(kArrayF, dataF) [2018-01-24T17:04:12.401681Z] record1.set(kArrayD, dataD) [2018-01-24T17:04:12.401736Z] record1.set(kString, dataString) [2018-01-24T17:04:12.401813Z] self.assertFloatsEqual(record1.get(kArrayB), dataB) [2018-01-24T17:04:12.401899Z] self.assertFloatsEqual(record1.get(kArrayU), dataU) [2018-01-24T17:04:12.401972Z] self.assertFloatsEqual(record1.get(kArrayI), dataI) [2018-01-24T17:04:12.402045Z] self.assertFloatsEqual(record1.get(kArrayF), dataF) [2018-01-24T17:04:12.402118Z] self.assertFloatsEqual(record1.get(kArrayD), dataD) [2018-01-24T17:04:12.402189Z] self.assertEqual(record1.get(kString), dataString) [2018-01-24T17:04:12.402247Z] # Test __getitem__ and view semantics [2018-01-24T17:04:12.402308Z] record1[kArrayF][2] = 3.5 [2018-01-24T17:04:12.402364Z] self.assertEqual(dataF[2], 3.5) [2018-01-24T17:04:12.402461Z] # Check that we throw when we try to index a variable-length array Key [2018-01-24T17:04:12.402542Z] with self.assertRaises(lsst.pex.exceptions.LogicError): [2018-01-24T17:04:12.402580Z] kArrayI[0] [2018-01-24T17:04:12.402672Z] with self.assertRaises(lsst.pex.exceptions.LogicError): [2018-01-24T17:04:12.402708Z] kArrayI[0:1] [2018-01-24T17:04:12.402805Z] # Test copying records, both with and without SchemaMapper [2018-01-24T17:04:12.402851Z] record2 = cat1.addNew() [2018-01-24T17:04:12.402897Z] record2.assign(record1) [2018-01-24T17:04:12.402974Z] self.assertFloatsEqual(record2.get(kArrayB), dataB) [2018-01-24T17:04:12.403051Z] self.assertFloatsEqual(record2.get(kArrayU), dataU) [2018-01-24T17:04:12.403128Z] self.assertFloatsEqual(record2.get(kArrayI), dataI) [2018-01-24T17:04:12.403205Z] self.assertFloatsEqual(record2.get(kArrayF), dataF) [2018-01-24T17:04:12.403282Z] self.assertFloatsEqual(record2.get(kArrayD), dataD) [2018-01-24T17:04:12.403358Z] self.assertEqual(record2.get(kString), dataString) [2018-01-24T17:04:12.403406Z] record1[kArrayF][2] = 4.5 [2018-01-24T17:04:12.403463Z] # copy in assign() should be deep [2018-01-24T17:04:12.403530Z] self.assertEqual(record2[kArrayF][2], 3.5) [2018-01-24T17:04:12.403599Z] mapper = lsst.afw.table.SchemaMapper(schema) [2018-01-24T17:04:12.403657Z] kb2 = mapper.addMapping(kArrayF) [2018-01-24T17:04:12.403757Z] cat2 = lsst.afw.table.BaseCatalog(mapper.getOutputSchema()) [2018-01-24T17:04:12.403814Z] record3 = cat2.addNew() [2018-01-24T17:04:12.403872Z] record3.assign(record1, mapper) [2018-01-24T17:04:12.403947Z] self.assertFloatsEqual(record3.get(kb2), dataF) [2018-01-24T17:04:12.404088Z] # Test that we throw if we try to get a column view of a [2018-01-24T17:04:12.404142Z] # variable-length arry [2018-01-24T17:04:12.404261Z] with self.assertRaises(lsst.pex.exceptions.LogicError): [2018-01-24T17:04:12.404334Z] cat1.get(kArrayI) [2018-01-24T17:04:12.404461Z] # Test that we can round-trip variable-length arrays through FITS [2018-01-24T17:04:12.404561Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.404616Z] cat1.writeFits(filename) [2018-01-24T17:04:12.404700Z] > cat3 = lsst.afw.table.BaseCatalog.readFits(filename) [2018-01-24T17:04:12.404738Z] E FitsError: [2018-01-24T17:04:12.404886Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.405117Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_simpleTable_testVariableLengthArrays-fNLnb7.fits' with mode 'r' [2018-01-24T17:04:12.405167Z] E cfitsio error stack: [2018-01-24T17:04:12.405212Z] E {0} [2018-01-24T17:04:12.405462Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_simpleTable_testVariableLengthArrays-fNLnb7.fits' with mode 'r' [2018-01-24T17:04:12.405530Z] E cfitsio error stack: [2018-01-24T17:04:12.405559Z] E ' [2018-01-24T17:04:12.405572Z] [2018-01-24T17:04:12.405629Z] tests/test_simpleTable.py:714: FitsError [2018-01-24T17:04:12.405731Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.405743Z] [2018-01-24T17:04:12.405836Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.405934Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.406006Z] that was used when compiling the application program: [2018-01-24T17:04:12.406074Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.406142Z] Version included by the application program = 5 [2018-01-24T17:04:12.406155Z] [2018-01-24T17:04:12.406243Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.406284Z] with the CFITSIO library. [2018-01-24T17:04:12.406385Z] ___________________ StatisticsTestCase.testSampleImageStats ____________________ [2018-01-24T17:04:12.406479Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.406491Z] [2018-01-24T17:04:12.406587Z] self = [2018-01-24T17:04:12.406600Z] [2018-01-24T17:04:12.406680Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.406732Z] def testSampleImageStats(self): [2018-01-24T17:04:12.406816Z] """ Compare our results to known values in test data """ [2018-01-24T17:04:12.406833Z] [2018-01-24T17:04:12.406881Z] imgfiles = [] [2018-01-24T17:04:12.406947Z] imgfiles.append("v1_i1_g_m400_s20_f.fits") [2018-01-24T17:04:12.407015Z] imgfiles.append("v1_i1_g_m400_s20_u16.fits") [2018-01-24T17:04:12.407082Z] imgfiles.append("v1_i2_g_m400_s20_f.fits") [2018-01-24T17:04:12.407150Z] imgfiles.append("v1_i2_g_m400_s20_u16.fits") [2018-01-24T17:04:12.407211Z] imgfiles.append("v2_i1_p_m9_f.fits") [2018-01-24T17:04:12.407273Z] imgfiles.append("v2_i1_p_m9_u16.fits") [2018-01-24T17:04:12.407332Z] imgfiles.append("v2_i2_p_m9_f.fits") [2018-01-24T17:04:12.407394Z] imgfiles.append("v2_i2_p_m9_u16.fits") [2018-01-24T17:04:12.407411Z] [2018-01-24T17:04:12.407472Z] afwdataDir = os.getenv("AFWDATA_DIR") [2018-01-24T17:04:12.407489Z] [2018-01-24T17:04:12.407537Z] for imgfile in imgfiles: [2018-01-24T17:04:12.407554Z] [2018-01-24T17:04:12.407657Z] imgPath = os.path.join(afwdataDir, "Statistics", imgfile) [2018-01-24T17:04:12.407674Z] [2018-01-24T17:04:12.407730Z] # get the image and header [2018-01-24T17:04:12.407816Z] > dimg = afwImage.DecoratedImageF(imgPath) [2018-01-24T17:04:12.407865Z] E FitsError: [2018-01-24T17:04:12.408044Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.408264Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/Statistics/v1_i1_g_m400_s20_f.fits' with mode 'r' [2018-01-24T17:04:12.408315Z] E cfitsio error stack: [2018-01-24T17:04:12.408346Z] E {0} [2018-01-24T17:04:12.408601Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/Statistics/v1_i1_g_m400_s20_f.fits' with mode 'r' [2018-01-24T17:04:12.408650Z] E cfitsio error stack: [2018-01-24T17:04:12.408676Z] E ' [2018-01-24T17:04:12.408688Z] [2018-01-24T17:04:12.408742Z] tests/test_statistics.py:261: FitsError [2018-01-24T17:04:12.408841Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.408854Z] [2018-01-24T17:04:12.408943Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.409041Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.409111Z] that was used when compiling the application program: [2018-01-24T17:04:12.409178Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.409244Z] Version included by the application program = 5 [2018-01-24T17:04:12.409256Z] [2018-01-24T17:04:12.409343Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.409382Z] with the CFITSIO library. [2018-01-24T17:04:12.409481Z] ___________________ ArchiveImportTestCase.testArchiveImports ___________________ [2018-01-24T17:04:12.409572Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.409585Z] [2018-01-24T17:04:12.409687Z] self = [2018-01-24T17:04:12.409699Z] [2018-01-24T17:04:12.409746Z] def testArchiveImports(self): [2018-01-24T17:04:12.409861Z] # This file was saved with a Psf defined in testTableArchivesLib, so we'll only be able [2018-01-24T17:04:12.409938Z] # to load it if the module-importer mechanism works. [2018-01-24T17:04:12.410031Z] filename = os.path.join(testPath, "data", "archiveImportTest.fits") [2018-01-24T17:04:12.410094Z] > exposure = afwImage.ExposureF(filename) [2018-01-24T17:04:12.410127Z] E FitsError: [2018-01-24T17:04:12.410266Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.410449Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/archiveImportTest.fits' with mode 'r' [2018-01-24T17:04:12.410493Z] E cfitsio error stack: [2018-01-24T17:04:12.410518Z] E {0} [2018-01-24T17:04:12.410728Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/archiveImportTest.fits' with mode 'r' [2018-01-24T17:04:12.410771Z] E cfitsio error stack: [2018-01-24T17:04:12.410794Z] E ' [2018-01-24T17:04:12.410807Z] [2018-01-24T17:04:12.410868Z] tests/test_tableArchiveImport.py:39: FitsError [2018-01-24T17:04:12.410981Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.411005Z] [2018-01-24T17:04:12.411108Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.411231Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.411324Z] that was used when compiling the application program: [2018-01-24T17:04:12.411416Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.411508Z] Version included by the application program = 5 [2018-01-24T17:04:12.411524Z] [2018-01-24T17:04:12.411625Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.411680Z] with the CFITSIO library. [2018-01-24T17:04:12.411781Z] ______________________ TableIoTestCase.testSchemaReading _______________________ [2018-01-24T17:04:12.411873Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.411886Z] [2018-01-24T17:04:12.411970Z] self = [2018-01-24T17:04:12.411982Z] [2018-01-24T17:04:12.412029Z] def testSchemaReading(self): [2018-01-24T17:04:12.412105Z] """Test that a Schema can be read from a FITS file [2018-01-24T17:04:12.412121Z] [2018-01-24T17:04:12.412159Z] Per DM-8211. [2018-01-24T17:04:12.412188Z] """ [2018-01-24T17:04:12.412245Z] schema = lsst.afw.table.Schema() [2018-01-24T17:04:12.412318Z] aa = schema.addField("a", type=np.int64, doc="a") [2018-01-24T17:04:12.412395Z] bb = schema.addField("b", type=np.float64, doc="b") [2018-01-24T17:04:12.412453Z] schema.getAliasMap().set("c", "a") [2018-01-24T17:04:12.412510Z] schema.getAliasMap().set("d", "b") [2018-01-24T17:04:12.412575Z] cat = lsst.afw.table.BaseCatalog(schema) [2018-01-24T17:04:12.412615Z] row = cat.addNew() [2018-01-24T17:04:12.412656Z] row.set(aa, 12345) [2018-01-24T17:04:12.412697Z] row.set(bb, 1.2345) [2018-01-24T17:04:12.412777Z] with lsst.utils.tests.getTempFilePath(".fits") as temp: [2018-01-24T17:04:12.412823Z] cat.writeFits(temp) [2018-01-24T17:04:12.412915Z] > self.assertEqual(lsst.afw.table.Schema.readFits(temp), schema) [2018-01-24T17:04:12.412952Z] E FitsError: [2018-01-24T17:04:12.413114Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.413334Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_tableIO_testSchemaReading-wdH9Yw.fits' with mode 'r' [2018-01-24T17:04:12.413384Z] E cfitsio error stack: [2018-01-24T17:04:12.413415Z] E {0} [2018-01-24T17:04:12.413669Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_tableIO_testSchemaReading-wdH9Yw.fits' with mode 'r' [2018-01-24T17:04:12.413717Z] E cfitsio error stack: [2018-01-24T17:04:12.413743Z] E ' [2018-01-24T17:04:12.413756Z] [2018-01-24T17:04:12.413806Z] tests/test_tableIO.py:68: FitsError [2018-01-24T17:04:12.413904Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.413917Z] [2018-01-24T17:04:12.414007Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.414116Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.414188Z] that was used when compiling the application program: [2018-01-24T17:04:12.414256Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.414325Z] Version included by the application program = 5 [2018-01-24T17:04:12.414337Z] [2018-01-24T17:04:12.414426Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.414467Z] with the CFITSIO library. [2018-01-24T17:04:12.414757Z] ___________________________ ReadMefTest.testExtName ____________________________ [2018-01-24T17:04:12.414905Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.414929Z] [2018-01-24T17:04:12.415010Z] self = [2018-01-24T17:04:12.415024Z] [2018-01-24T17:04:12.415078Z] def testExtName(self): [2018-01-24T17:04:12.415148Z] > self.checkExtName("ONE", 1, 2) [2018-01-24T17:04:12.415162Z] [2018-01-24T17:04:12.415208Z] tests/test_ticket2352.py:54: [2018-01-24T17:04:12.415340Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.415386Z] [2018-01-24T17:04:12.415493Z] self = , name = 'ONE' [2018-01-24T17:04:12.415536Z] value = 1, extNum = 2 [2018-01-24T17:04:12.415550Z] [2018-01-24T17:04:12.415615Z] def checkExtName(self, name, value, extNum): [2018-01-24T17:04:12.415673Z] filename = DATA + "[%s]" % name [2018-01-24T17:04:12.415690Z] [2018-01-24T17:04:12.415768Z] > header = afwImage.readMetadata(filename) [2018-01-24T17:04:12.415801Z] E FitsError: [2018-01-24T17:04:12.415941Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.416122Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ticket2352.fits[ONE]' with mode 'r' [2018-01-24T17:04:12.416166Z] E cfitsio error stack: [2018-01-24T17:04:12.416191Z] E {0} [2018-01-24T17:04:12.416398Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ticket2352.fits[ONE]' with mode 'r' [2018-01-24T17:04:12.416442Z] E cfitsio error stack: [2018-01-24T17:04:12.416464Z] E ' [2018-01-24T17:04:12.416476Z] [2018-01-24T17:04:12.416530Z] tests/test_ticket2352.py:46: FitsError [2018-01-24T17:04:12.416628Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.416641Z] [2018-01-24T17:04:12.416730Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.416825Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.416894Z] that was used when compiling the application program: [2018-01-24T17:04:12.416961Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.417027Z] Version included by the application program = 5 [2018-01-24T17:04:12.417039Z] [2018-01-24T17:04:12.417138Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.417178Z] with the CFITSIO library. [2018-01-24T17:04:12.418445Z] ____________________________ ReadMefTest.testExtNum ____________________________ [2018-01-24T17:04:12.418595Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.418612Z] [2018-01-24T17:04:12.418704Z] self = [2018-01-24T17:04:12.418719Z] [2018-01-24T17:04:12.418759Z] def testExtNum(self): [2018-01-24T17:04:12.418844Z] # N.b. The test file was written with 1-indexed EXT_NUMs [2018-01-24T17:04:12.418917Z] > self.checkExtNum(None, 2) # Should skip PHU [2018-01-24T17:04:12.418931Z] [2018-01-24T17:04:12.418976Z] tests/test_ticket2352.py:66: [2018-01-24T17:04:12.419103Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.419128Z] [2018-01-24T17:04:12.419226Z] self = , hdu = -2147483648L [2018-01-24T17:04:12.419251Z] extNum = 2 [2018-01-24T17:04:12.419263Z] [2018-01-24T17:04:12.419318Z] def checkExtNum(self, hdu, extNum): [2018-01-24T17:04:12.419355Z] if hdu is None: [2018-01-24T17:04:12.419399Z] hdu = DEFAULT_HDU [2018-01-24T17:04:12.419465Z] > header = afwImage.readMetadata(DATA, hdu) [2018-01-24T17:04:12.419499Z] E FitsError: [2018-01-24T17:04:12.419640Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.419817Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ticket2352.fits' with mode 'r' [2018-01-24T17:04:12.419861Z] E cfitsio error stack: [2018-01-24T17:04:12.419887Z] E {0} [2018-01-24T17:04:12.420091Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ticket2352.fits' with mode 'r' [2018-01-24T17:04:12.420136Z] E cfitsio error stack: [2018-01-24T17:04:12.420158Z] E ' [2018-01-24T17:04:12.420171Z] [2018-01-24T17:04:12.420224Z] tests/test_ticket2352.py:61: FitsError [2018-01-24T17:04:12.420324Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.420337Z] [2018-01-24T17:04:12.420429Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.420525Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.420595Z] that was used when compiling the application program: [2018-01-24T17:04:12.420662Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.420729Z] Version included by the application program = 5 [2018-01-24T17:04:12.420742Z] [2018-01-24T17:04:12.420828Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.420868Z] with the CFITSIO library. [2018-01-24T17:04:12.422203Z] _________________________ WcsFormatterTest.testFormat __________________________ [2018-01-24T17:04:12.422336Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.422361Z] [2018-01-24T17:04:12.422465Z] self = [2018-01-24T17:04:12.422493Z] [2018-01-24T17:04:12.422530Z] def setUp(self): [2018-01-24T17:04:12.422608Z] > exposure = afwImage.ExposureF(DATA) [2018-01-24T17:04:12.422651Z] E FitsError: [2018-01-24T17:04:12.422797Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.422981Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ticket2233.fits' with mode 'r' [2018-01-24T17:04:12.423026Z] E cfitsio error stack: [2018-01-24T17:04:12.423052Z] E {0} [2018-01-24T17:04:12.423273Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ticket2233.fits' with mode 'r' [2018-01-24T17:04:12.423318Z] E cfitsio error stack: [2018-01-24T17:04:12.423340Z] E ' [2018-01-24T17:04:12.423353Z] [2018-01-24T17:04:12.423406Z] tests/test_ticket2233.py:64: FitsError [2018-01-24T17:04:12.423506Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.423518Z] [2018-01-24T17:04:12.423609Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.423705Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.423775Z] that was used when compiling the application program: [2018-01-24T17:04:12.423843Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.423910Z] Version included by the application program = 5 [2018-01-24T17:04:12.423922Z] [2018-01-24T17:04:12.424023Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.424064Z] with the CFITSIO library. [2018-01-24T17:04:12.425615Z] ______________________ SourceTableTestCase.testPersisted _______________________ [2018-01-24T17:04:12.425770Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.425799Z] [2018-01-24T17:04:12.425915Z] self = [2018-01-24T17:04:12.425933Z] [2018-01-24T17:04:12.426073Z] def testPersisted(self): [2018-01-24T17:04:12.426145Z] self.table.definePsfFlux("a") [2018-01-24T17:04:12.426214Z] self.table.defineCentroid("b") [2018-01-24T17:04:12.426265Z] self.table.defineShape("c") [2018-01-24T17:04:12.426350Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.426410Z] self.catalog.writeFits(filename) [2018-01-24T17:04:12.426497Z] > catalog = lsst.afw.table.SourceCatalog.readFits(filename) [2018-01-24T17:04:12.426562Z] E FitsError: [2018-01-24T17:04:12.426710Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.426924Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_ticketDM-433_testPersisted-gmxyIA.fits' with mode 'r' [2018-01-24T17:04:12.426973Z] E cfitsio error stack: [2018-01-24T17:04:12.427003Z] E {0} [2018-01-24T17:04:12.427244Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_ticketDM-433_testPersisted-gmxyIA.fits' with mode 'r' [2018-01-24T17:04:12.427293Z] E cfitsio error stack: [2018-01-24T17:04:12.427319Z] E ' [2018-01-24T17:04:12.427331Z] [2018-01-24T17:04:12.427388Z] tests/test_ticketDM-433.py:167: FitsError [2018-01-24T17:04:12.427487Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.427500Z] [2018-01-24T17:04:12.427590Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.427685Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.427755Z] that was used when compiling the application program: [2018-01-24T17:04:12.427821Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.427888Z] Version included by the application program = 5 [2018-01-24T17:04:12.427900Z] [2018-01-24T17:04:12.427986Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.428025Z] with the CFITSIO library. [2018-01-24T17:04:12.429212Z] _______________________ SimpleTableTestCase.testBaseFits _______________________ [2018-01-24T17:04:12.429326Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.429350Z] [2018-01-24T17:04:12.429451Z] self = [2018-01-24T17:04:12.429479Z] [2018-01-24T17:04:12.429519Z] def testBaseFits(self): [2018-01-24T17:04:12.429603Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.429664Z] > self._testBaseFits(tmpFile) [2018-01-24T17:04:12.429693Z] [2018-01-24T17:04:12.429753Z] tests/test_simpleTable.py:192: [2018-01-24T17:04:12.429860Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.429873Z] [2018-01-24T17:04:12.429976Z] self = [2018-01-24T17:04:12.430118Z] target = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_simpleTable_testBaseFits-6rU7Va.fits' [2018-01-24T17:04:12.430133Z] [2018-01-24T17:04:12.430184Z] def _testBaseFits(self, target): [2018-01-24T17:04:12.430241Z] schema = lsst.afw.table.Schema() [2018-01-24T17:04:12.430298Z] k = schema.addField("f", type="D") [2018-01-24T17:04:12.430363Z] cat1 = lsst.afw.table.BaseCatalog(schema) [2018-01-24T17:04:12.430405Z] for i in range(50): [2018-01-24T17:04:12.430454Z] record = cat1.addNew() [2018-01-24T17:04:12.430513Z] record.set(k, np.random.randn()) [2018-01-24T17:04:12.430558Z] cat1.writeFits(target) [2018-01-24T17:04:12.430633Z] > cat2 = lsst.afw.table.BaseCatalog.readFits(target) [2018-01-24T17:04:12.430665Z] E FitsError: [2018-01-24T17:04:12.430819Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.431031Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_simpleTable_testBaseFits-6rU7Va.fits' with mode 'r' [2018-01-24T17:04:12.431077Z] E cfitsio error stack: [2018-01-24T17:04:12.431103Z] E {0} [2018-01-24T17:04:12.431342Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_simpleTable_testBaseFits-6rU7Va.fits' with mode 'r' [2018-01-24T17:04:12.431388Z] E cfitsio error stack: [2018-01-24T17:04:12.431411Z] E ' [2018-01-24T17:04:12.431423Z] [2018-01-24T17:04:12.431480Z] tests/test_simpleTable.py:185: FitsError [2018-01-24T17:04:12.431582Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.431596Z] [2018-01-24T17:04:12.431688Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.431786Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.431858Z] that was used when compiling the application program: [2018-01-24T17:04:12.431926Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.431995Z] Version included by the application program = 5 [2018-01-24T17:04:12.432007Z] [2018-01-24T17:04:12.432095Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.432135Z] with the CFITSIO library. [2018-01-24T17:04:12.433058Z] _______________________ TransformTestCase.testTransforms _______________________ [2018-01-24T17:04:12.433171Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.433186Z] [2018-01-24T17:04:12.433287Z] self = [2018-01-24T17:04:12.433309Z] [2018-01-24T17:04:12.433363Z] def testTransforms(self): [2018-01-24T17:04:12.433442Z] for fromName in self.endpointPrefixes: [2018-01-24T17:04:12.433524Z] for toName in self.endpointPrefixes: [2018-01-24T17:04:12.433620Z] self.checkTransformFromMapping(fromName, toName) [2018-01-24T17:04:12.433712Z] > self.checkTransformFromFrameSet(fromName, toName) [2018-01-24T17:04:12.433726Z] [2018-01-24T17:04:12.433774Z] tests/test_transform.py:39: [2018-01-24T17:04:12.433902Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.434018Z] python/lsst/afw/geom/testUtils.py:816: in checkTransformFromFrameSet [2018-01-24T17:04:12.434093Z] self.checkPersistence(transform) [2018-01-24T17:04:12.434217Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.434234Z] [2018-01-24T17:04:12.434336Z] self = [2018-01-24T17:04:12.434408Z] transform = lsst.afw.geom.TransformGenericToGeneric[1->1] [2018-01-24T17:04:12.434420Z] [2018-01-24T17:04:12.434474Z] def checkPersistence(self, transform): [2018-01-24T17:04:12.434530Z] """Check persistence of a transform [2018-01-24T17:04:12.434557Z] """ [2018-01-24T17:04:12.434613Z] className = type(transform).__name__ [2018-01-24T17:04:12.434629Z] [2018-01-24T17:04:12.434698Z] # check writeString and readString [2018-01-24T17:04:12.434760Z] transformStr = transform.writeString() [2018-01-24T17:04:12.434857Z] serialVersion, serialClassName, serialRest = transformStr.split(" ", 2) [2018-01-24T17:04:12.434921Z] self.assertEqual(int(serialVersion), 1) [2018-01-24T17:04:12.434989Z] self.assertEqual(serialClassName, className) [2018-01-24T17:04:12.435079Z] badStr1 = " ".join(["2", serialClassName, serialRest]) [2018-01-24T17:04:12.435166Z] with self.assertRaises(lsst.pex.exceptions.InvalidParameterError): [2018-01-24T17:04:12.435220Z] transform.readString(badStr1) [2018-01-24T17:04:12.435276Z] badClassName = "x" + serialClassName [2018-01-24T17:04:12.435348Z] badStr2 = " ".join(["1", badClassName, serialRest]) [2018-01-24T17:04:12.435435Z] with self.assertRaises(lsst.pex.exceptions.InvalidParameterError): [2018-01-24T17:04:12.435503Z] transform.readString(badStr2) [2018-01-24T17:04:12.435582Z] transformFromStr1 = transform.readString(transformStr) [2018-01-24T17:04:12.435663Z] self.assertTransformsEqual(transform, transformFromStr1) [2018-01-24T17:04:12.435706Z] [2018-01-24T17:04:12.435759Z] # check transformFromString [2018-01-24T17:04:12.435858Z] transformFromStr2 = afwGeom.transformFromString(transformStr) [2018-01-24T17:04:12.435935Z] self.assertTransformsEqual(transform, transformFromStr2) [2018-01-24T17:04:12.435951Z] [2018-01-24T17:04:12.435988Z] # Check pickling [2018-01-24T17:04:12.436109Z] self.assertTransformsEqual(transform, pickle.loads(pickle.dumps(transform))) [2018-01-24T17:04:12.436128Z] [2018-01-24T17:04:12.436199Z] # Check afw::table::io persistence round-trip [2018-01-24T17:04:12.436287Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.436346Z] transform.writeFits(filename) [2018-01-24T17:04:12.436453Z] > self.assertTransformsEqual(transform, type(transform).readFits(filename)) [2018-01-24T17:04:12.436492Z] E FitsError: [2018-01-24T17:04:12.436640Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.436825Z] E cfitsio error: could not open the named file (104) : Opening file 'testUtils_checkTransformFromFrameSet-hYtpqo.fits' with mode 'r' [2018-01-24T17:04:12.436872Z] E cfitsio error stack: [2018-01-24T17:04:12.436902Z] E {0} [2018-01-24T17:04:12.437100Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file 'testUtils_checkTransformFromFrameSet-hYtpqo.fits' with mode 'r' [2018-01-24T17:04:12.437162Z] E cfitsio error stack: [2018-01-24T17:04:12.437189Z] E ' [2018-01-24T17:04:12.437201Z] [2018-01-24T17:04:12.437268Z] python/lsst/afw/geom/testUtils.py:1127: FitsError [2018-01-24T17:04:12.437387Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.437416Z] [2018-01-24T17:04:12.437514Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.437722Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.437803Z] that was used when compiling the application program: [2018-01-24T17:04:12.437886Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.437969Z] Version included by the application program = 5 [2018-01-24T17:04:12.437984Z] [2018-01-24T17:04:12.438073Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.438114Z] with the CFITSIO library. [2018-01-24T17:04:12.438216Z] ___________ TransformBoundedFieldTestCase.testPersistenceAndEquality ___________ [2018-01-24T17:04:12.438311Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.438324Z] [2018-01-24T17:04:12.438461Z] self = [2018-01-24T17:04:12.438475Z] [2018-01-24T17:04:12.438532Z] def testPersistenceAndEquality(self): [2018-01-24T17:04:12.438605Z] """Test persistence using writeFits and readFits [2018-01-24T17:04:12.438622Z] [2018-01-24T17:04:12.438669Z] Also test operator== [2018-01-24T17:04:12.438698Z] """ [2018-01-24T17:04:12.438782Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.438860Z] self.boundedField.writeFits(filename) [2018-01-24T17:04:12.438947Z] > readField = TransformBoundedField.readFits(filename) [2018-01-24T17:04:12.438987Z] E FitsError: [2018-01-24T17:04:12.439135Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.439379Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transformBoundedField_testPersistenceAndEquality-wpqz_e.fits' with mode 'r' [2018-01-24T17:04:12.439429Z] E cfitsio error stack: [2018-01-24T17:04:12.439460Z] E {0} [2018-01-24T17:04:12.439730Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transformBoundedField_testPersistenceAndEquality-wpqz_e.fits' with mode 'r' [2018-01-24T17:04:12.439781Z] E cfitsio error stack: [2018-01-24T17:04:12.439808Z] E ' [2018-01-24T17:04:12.439821Z] [2018-01-24T17:04:12.439889Z] tests/test_transformBoundedField.py:147: FitsError [2018-01-24T17:04:12.439990Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.440003Z] [2018-01-24T17:04:12.440108Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.440203Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.440273Z] that was used when compiling the application program: [2018-01-24T17:04:12.440339Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.440405Z] Version included by the application program = 5 [2018-01-24T17:04:12.440418Z] [2018-01-24T17:04:12.440503Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.440542Z] with the CFITSIO library. [2018-01-24T17:04:12.440978Z] _____________ TransformBoundedFieldTestCase.testComplexPersistence _____________ [2018-01-24T17:04:12.441083Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.441097Z] [2018-01-24T17:04:12.441293Z] self = [2018-01-24T17:04:12.441317Z] [2018-01-24T17:04:12.441388Z] def testComplexPersistence(self): [2018-01-24T17:04:12.441509Z] """Test persistence of a TransformBoundedField whose string representation is huge [2018-01-24T17:04:12.441549Z] """ [2018-01-24T17:04:12.441659Z] # DM-11964 shows that CFITSIO cannot handle string fields [2018-01-24T17:04:12.441769Z] # in binary tables that have more than 28799 characters [2018-01-24T17:04:12.441848Z] # make sure the test has plenty of margin [2018-01-24T17:04:12.441895Z] minChars = 10 * 28799 [2018-01-24T17:04:12.442005Z] degree = 100 # make large enough that len(transform.writeString()) > minChars [2018-01-24T17:04:12.442075Z] n_coeffs = (degree + 1) * (degree + 2) // 2 [2018-01-24T17:04:12.442147Z] coeffs = np.zeros((n_coeffs, 4), dtype=float) [2018-01-24T17:04:12.442175Z] k = 0 [2018-01-24T17:04:12.442224Z] for j in range(degree+1): [2018-01-24T17:04:12.442281Z] for i in range(degree-j+1): [2018-01-24T17:04:12.442348Z] coeffs[k][0] = np.random.random() [2018-01-24T17:04:12.442397Z] coeffs[k][1] = 1 [2018-01-24T17:04:12.442446Z] coeffs[k][2] = i [2018-01-24T17:04:12.442494Z] coeffs[k][3] = j [2018-01-24T17:04:12.442531Z] k += 1 [2018-01-24T17:04:12.442594Z] chebyMap = astshim.PolyMap(coeffs, 1) [2018-01-24T17:04:12.442684Z] transform = lsst.afw.geom.TransformPoint2ToGeneric(chebyMap) [2018-01-24T17:04:12.442787Z] print("nchar=%s; minChar=%s" % (len(transform.writeString()), minChars)) [2018-01-24T17:04:12.442874Z] self.assertGreater(len(transform.writeString()), minChars) [2018-01-24T17:04:12.442969Z] complexBoundedField = TransformBoundedField(self.bbox, transform) [2018-01-24T17:04:12.443056Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.443126Z] complexBoundedField.writeFits(filename) [2018-01-24T17:04:12.443211Z] > readField = TransformBoundedField.readFits(filename) [2018-01-24T17:04:12.443249Z] E FitsError: [2018-01-24T17:04:12.443399Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.443640Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transformBoundedField_testComplexPersistence-VfPIrc.fits' with mode 'r' [2018-01-24T17:04:12.443721Z] E cfitsio error stack: [2018-01-24T17:04:12.443755Z] E {0} [2018-01-24T17:04:12.444024Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transformBoundedField_testComplexPersistence-VfPIrc.fits' with mode 'r' [2018-01-24T17:04:12.444076Z] E cfitsio error stack: [2018-01-24T17:04:12.444103Z] E ' [2018-01-24T17:04:12.444117Z] [2018-01-24T17:04:12.444185Z] tests/test_transformBoundedField.py:183: FitsError [2018-01-24T17:04:12.444288Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.444332Z] nchar=420529; minChar=287990 [2018-01-24T17:04:12.444345Z] [2018-01-24T17:04:12.444438Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.444537Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.444609Z] that was used when compiling the application program: [2018-01-24T17:04:12.444678Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.444746Z] Version included by the application program = 5 [2018-01-24T17:04:12.444759Z] [2018-01-24T17:04:12.444874Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.444942Z] with the CFITSIO library. [2018-01-24T17:04:12.445066Z] ________ ValidPolygonTestCase.testExposureCatalogBackwardsCompatibility ________ [2018-01-24T17:04:12.445185Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.445208Z] [2018-01-24T17:04:12.445345Z] self = [2018-01-24T17:04:12.445365Z] [2018-01-24T17:04:12.445440Z] def testExposureCatalogBackwardsCompatibility(self): [2018-01-24T17:04:12.445560Z] """Test that we can read an ExposureCatalog written with an old version of the code.""" [2018-01-24T17:04:12.445641Z] testPath = os.path.abspath(os.path.dirname(__file__)) [2018-01-24T17:04:12.445748Z] filename = os.path.join(testPath, "data", "version-0-ExposureCatalog.fits") [2018-01-24T17:04:12.445825Z] > cat = afwTable.ExposureCatalog.readFits(filename) [2018-01-24T17:04:12.445859Z] E FitsError: [2018-01-24T17:04:12.446004Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.446204Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/version-0-ExposureCatalog.fits' with mode 'r' [2018-01-24T17:04:12.446249Z] E cfitsio error stack: [2018-01-24T17:04:12.446276Z] E {0} [2018-01-24T17:04:12.446504Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/version-0-ExposureCatalog.fits' with mode 'r' [2018-01-24T17:04:12.446550Z] E cfitsio error stack: [2018-01-24T17:04:12.446573Z] E ' [2018-01-24T17:04:12.446587Z] [2018-01-24T17:04:12.446644Z] tests/test_validPolygon.py:88: FitsError [2018-01-24T17:04:12.446746Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.446759Z] [2018-01-24T17:04:12.446852Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.446951Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.447023Z] that was used when compiling the application program: [2018-01-24T17:04:12.447091Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.447160Z] Version included by the application program = 5 [2018-01-24T17:04:12.447173Z] [2018-01-24T17:04:12.447261Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.447303Z] with the CFITSIO library. [2018-01-24T17:04:12.448526Z] _________________ ValidPolygonTestCase.testExposurePersistence _________________ [2018-01-24T17:04:12.448688Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.448716Z] [2018-01-24T17:04:12.448838Z] self = [2018-01-24T17:04:12.448867Z] [2018-01-24T17:04:12.448948Z] def testExposurePersistence(self): [2018-01-24T17:04:12.449057Z] """Test that the ValidPolygon is saved with an Exposure""" [2018-01-24T17:04:12.449151Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.449224Z] exposure1 = afwImage.ExposureF(self.bbox) [2018-01-24T17:04:12.449305Z] exposure1.getInfo().setValidPolygon(self.polygon) [2018-01-24T17:04:12.449364Z] exposure1.writeFits(filename) [2018-01-24T17:04:12.449437Z] > exposure2 = afwImage.ExposureF(filename) [2018-01-24T17:04:12.449476Z] E FitsError: [2018-01-24T17:04:12.449625Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.449857Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_validPolygon_testExposurePersistence-bUGnig.fits' with mode 'r' [2018-01-24T17:04:12.449908Z] E cfitsio error stack: [2018-01-24T17:04:12.449939Z] E {0} [2018-01-24T17:04:12.450198Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_validPolygon_testExposurePersistence-bUGnig.fits' with mode 'r' [2018-01-24T17:04:12.450249Z] E cfitsio error stack: [2018-01-24T17:04:12.450277Z] E ' [2018-01-24T17:04:12.450289Z] [2018-01-24T17:04:12.450346Z] tests/test_validPolygon.py:67: FitsError [2018-01-24T17:04:12.450449Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.450462Z] [2018-01-24T17:04:12.450555Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.450654Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.450726Z] that was used when compiling the application program: [2018-01-24T17:04:12.450795Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.450863Z] Version included by the application program = 5 [2018-01-24T17:04:12.450876Z] [2018-01-24T17:04:12.450965Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.451005Z] with the CFITSIO library. [2018-01-24T17:04:12.452154Z] ____________________ VisitInfoTestCase.testTablePersistence ____________________ [2018-01-24T17:04:12.452297Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.452327Z] [2018-01-24T17:04:12.452435Z] self = [2018-01-24T17:04:12.452456Z] [2018-01-24T17:04:12.452510Z] def testTablePersistence(self): [2018-01-24T17:04:12.452586Z] for item in (self.data1, self.data2): [2018-01-24T17:04:12.452655Z] tablePath = os.path.join( [2018-01-24T17:04:12.452756Z] self.testDir, "testVisitInfo_testTablePersistence.fits") [2018-01-24T17:04:12.452817Z] v1 = afwImage.VisitInfo(*item) [2018-01-24T17:04:12.452870Z] v1.writeFits(tablePath) [2018-01-24T17:04:12.452944Z] > v2 = afwImage.VisitInfo.readFits(tablePath) [2018-01-24T17:04:12.452983Z] E FitsError: [2018-01-24T17:04:12.453133Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.453342Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/testVisitInfo_testTablePersistence.fits' with mode 'r' [2018-01-24T17:04:12.453392Z] E cfitsio error stack: [2018-01-24T17:04:12.453454Z] E {0} [2018-01-24T17:04:12.453693Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/testVisitInfo_testTablePersistence.fits' with mode 'r' [2018-01-24T17:04:12.453744Z] E cfitsio error stack: [2018-01-24T17:04:12.453772Z] E ' [2018-01-24T17:04:12.453784Z] [2018-01-24T17:04:12.453841Z] tests/test_visitInfo.py:165: FitsError [2018-01-24T17:04:12.453944Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.453957Z] [2018-01-24T17:04:12.454050Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.454149Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.454221Z] that was used when compiling the application program: [2018-01-24T17:04:12.454290Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.454359Z] Version included by the application program = 5 [2018-01-24T17:04:12.454372Z] [2018-01-24T17:04:12.454461Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.454501Z] with the CFITSIO library. [2018-01-24T17:04:12.455720Z] ______________ ValidPolygonTestCase.testExposureRecordPersistence ______________ [2018-01-24T17:04:12.455842Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.455870Z] [2018-01-24T17:04:12.456042Z] self = [2018-01-24T17:04:12.456070Z] [2018-01-24T17:04:12.456149Z] def testExposureRecordPersistence(self): [2018-01-24T17:04:12.456278Z] """Test that the ValidPolygon is saved with an ExposureRecord""" [2018-01-24T17:04:12.456373Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.456436Z] cat1 = afwTable.ExposureCatalog( [2018-01-24T17:04:12.456514Z] afwTable.ExposureTable.makeMinimalSchema()) [2018-01-24T17:04:12.456567Z] record1 = cat1.addNew() [2018-01-24T17:04:12.456634Z] record1.setValidPolygon(self.polygon) [2018-01-24T17:04:12.456687Z] cat1.writeFits(filename) [2018-01-24T17:04:12.456768Z] > cat2 = afwTable.ExposureCatalog.readFits(filename) [2018-01-24T17:04:12.456806Z] E FitsError: [2018-01-24T17:04:12.456955Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.457192Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_validPolygon_testExposureRecordPersistence-3f29DC.fits' with mode 'r' [2018-01-24T17:04:12.457242Z] E cfitsio error stack: [2018-01-24T17:04:12.457273Z] E {0} [2018-01-24T17:04:12.457537Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_validPolygon_testExposureRecordPersistence-3f29DC.fits' with mode 'r' [2018-01-24T17:04:12.457588Z] E cfitsio error stack: [2018-01-24T17:04:12.457615Z] E ' [2018-01-24T17:04:12.457628Z] [2018-01-24T17:04:12.457684Z] tests/test_validPolygon.py:79: FitsError [2018-01-24T17:04:12.457786Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.457799Z] [2018-01-24T17:04:12.457891Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.457989Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.458061Z] that was used when compiling the application program: [2018-01-24T17:04:12.458129Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.458197Z] Version included by the application program = 5 [2018-01-24T17:04:12.458210Z] [2018-01-24T17:04:12.458298Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.458338Z] with the CFITSIO library. [2018-01-24T17:04:12.459316Z] ____________________ TransmissionCurveTestCase.testExposure ____________________ [2018-01-24T17:04:12.459440Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.459464Z] [2018-01-24T17:04:12.459581Z] self = [2018-01-24T17:04:12.459610Z] [2018-01-24T17:04:12.459661Z] def testExposure(self): [2018-01-24T17:04:12.459831Z] """Test that we can attach a TransmissionCurve to an Exposure and round-trip it through I/O.""" [2018-01-24T17:04:12.459928Z] wavelengths = np.linspace(6200, 6400, 100) [2018-01-24T17:04:12.460027Z] curve = makeTestCurve(self.random, 6200, 6400, 0.0, 0.0) [2018-01-24T17:04:12.460130Z] tc1 = self.makeAndCheckSpatiallyConstant(curve, wavelengths, 0.0, 0.0) [2018-01-24T17:04:12.460211Z] exposure1 = lsst.afw.image.ExposureF(4, 5) [2018-01-24T17:04:12.460282Z] exposure1.getInfo().setTransmissionCurve(tc1) [2018-01-24T17:04:12.460367Z] self.assertTrue(exposure1.getInfo().hasTransmissionCurve()) [2018-01-24T17:04:12.460453Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.460510Z] exposure1.writeFits(filename) [2018-01-24T17:04:12.460609Z] > exposure2 = lsst.afw.image.ExposureF(filename) [2018-01-24T17:04:12.460646Z] E FitsError: [2018-01-24T17:04:12.460792Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.461019Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testExposure-d0ACjD.fits' with mode 'r' [2018-01-24T17:04:12.461066Z] E cfitsio error stack: [2018-01-24T17:04:12.461095Z] E {0} [2018-01-24T17:04:12.461327Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testExposure-d0ACjD.fits' with mode 'r' [2018-01-24T17:04:12.461374Z] E cfitsio error stack: [2018-01-24T17:04:12.461414Z] E ' [2018-01-24T17:04:12.461426Z] [2018-01-24T17:04:12.461488Z] tests/test_transmissionCurve.py:371: FitsError [2018-01-24T17:04:12.461588Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.461601Z] [2018-01-24T17:04:12.461691Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.461798Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.461864Z] that was used when compiling the application program: [2018-01-24T17:04:12.461928Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.461991Z] Version included by the application program = 5 [2018-01-24T17:04:12.462002Z] [2018-01-24T17:04:12.462084Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.462121Z] with the CFITSIO library. [2018-01-24T17:04:12.462941Z] _______________ WarpExposureTestCase.testMatchSwarpLanczos2Image _______________ [2018-01-24T17:04:12.463061Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.463084Z] [2018-01-24T17:04:12.463209Z] self = [2018-01-24T17:04:12.463223Z] [2018-01-24T17:04:12.463297Z] def testMatchSwarpLanczos2Image(self): [2018-01-24T17:04:12.463412Z] """Test that warpExposure matches swarp using a lanczos2 warping kernel [2018-01-24T17:04:12.463444Z] """ [2018-01-24T17:04:12.463550Z] > self.compareToSwarp("lanczos2", useWarpExposure=False) [2018-01-24T17:04:12.463568Z] [2018-01-24T17:04:12.463617Z] tests/test_warpExposure.py:348: [2018-01-24T17:04:12.463719Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.463761Z] [2018-01-24T17:04:12.463911Z] self = [2018-01-24T17:04:12.464039Z] kernelName = 'lanczos2', useWarpExposure = False, useSubregion = False [2018-01-24T17:04:12.464177Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.464229Z] atol = 0.01 [2018-01-24T17:04:12.464250Z] [2018-01-24T17:04:12.464344Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.464410Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.464530Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.464621Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.464687Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.464775Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.464792Z] [2018-01-24T17:04:12.464895Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.464912Z] [2018-01-24T17:04:12.464946Z] Inputs: [2018-01-24T17:04:12.465049Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.465163Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.465276Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.465388Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.465497Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.465597Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.465691Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.465794Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.465890Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.465942Z] 0 disables the cache [2018-01-24T17:04:12.466067Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.466170Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.466249Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.466329Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.466358Z] """ [2018-01-24T17:04:12.466422Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.466460Z] kernelName, [2018-01-24T17:04:12.466583Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.466620Z] cacheSize, [2018-01-24T17:04:12.466660Z] interpLength, [2018-01-24T17:04:12.466682Z] ) [2018-01-24T17:04:12.466721Z] if useSubregion: [2018-01-24T17:04:12.466816Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.466939Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.467015Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.467093Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.467160Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.467251Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.467338Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.467365Z] else: [2018-01-24T17:04:12.467454Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.467493Z] E FitsError: [2018-01-24T17:04:12.467676Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.467937Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.468005Z] E cfitsio error stack: [2018-01-24T17:04:12.468049Z] E {0} [2018-01-24T17:04:12.468317Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.468371Z] E cfitsio error stack: [2018-01-24T17:04:12.468400Z] E ' [2018-01-24T17:04:12.468413Z] [2018-01-24T17:04:12.468472Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.468573Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.468586Z] [2018-01-24T17:04:12.468677Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.468775Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.468845Z] that was used when compiling the application program: [2018-01-24T17:04:12.468913Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.468980Z] Version included by the application program = 5 [2018-01-24T17:04:12.468992Z] [2018-01-24T17:04:12.469079Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.469119Z] with the CFITSIO library. [2018-01-24T17:04:12.469219Z] _________ TransmissionCurveTestCase.testSpatiallyConstantUnevenSpacing _________ [2018-01-24T17:04:12.469311Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.469324Z] [2018-01-24T17:04:12.469449Z] self = [2018-01-24T17:04:12.469461Z] [2018-01-24T17:04:12.469527Z] def testSpatiallyConstantUnevenSpacing(self): [2018-01-24T17:04:12.469605Z] """Invoke all SpatiallyConstantUnevenSpacing tests. [2018-01-24T17:04:12.469622Z] [2018-01-24T17:04:12.469722Z] Should be updated to use subTest when Python < 3.4 support is ended. [2018-01-24T17:04:12.469751Z] """ [2018-01-24T17:04:12.469826Z] > self.checkSpatiallyConstantUnevenSpacing(0.0, 0.0) [2018-01-24T17:04:12.469839Z] [2018-01-24T17:04:12.469891Z] tests/test_transmissionCurve.py:187: [2018-01-24T17:04:12.469991Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.470086Z] tests/test_transmissionCurve.py:180: in checkSpatiallyConstantUnevenSpacing [2018-01-24T17:04:12.470130Z] self.checkPersistence(tc) [2018-01-24T17:04:12.470230Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.470243Z] [2018-01-24T17:04:12.470368Z] self = [2018-01-24T17:04:12.470467Z] tc = [2018-01-24T17:04:12.470696Z] points = [Point2D(0.4170220047, 0.7203244934), Point2D(0.0001143748173, 0.3023325726), Point2D(0.1467558908, 0.09233859477), Point2D(0.1862602114, 0.345560727), Point2D(0.3967674742, 0.538816734)] [2018-01-24T17:04:12.470710Z] [2018-01-24T17:04:12.470776Z] def checkPersistence(self, tc, points=None): [2018-01-24T17:04:12.470872Z] """Test that a TransmissionCurve round-trips through persistence.""" [2018-01-24T17:04:12.470913Z] if points is None: [2018-01-24T17:04:12.470960Z] points = self.points [2018-01-24T17:04:12.471046Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.471096Z] tc.writeFits(filename) [2018-01-24T17:04:12.471184Z] > tc2 = lsst.afw.image.TransmissionCurve.readFits(filename) [2018-01-24T17:04:12.471248Z] E FitsError: [2018-01-24T17:04:12.471413Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.471681Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testSpatiallyConstantUnevenSpacing-8ciE01.fits' with mode 'r' [2018-01-24T17:04:12.471744Z] E cfitsio error stack: [2018-01-24T17:04:12.471789Z] E {0} [2018-01-24T17:04:12.472135Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testSpatiallyConstantUnevenSpacing-8ciE01.fits' with mode 'r' [2018-01-24T17:04:12.472195Z] E cfitsio error stack: [2018-01-24T17:04:12.472224Z] E ' [2018-01-24T17:04:12.472237Z] [2018-01-24T17:04:12.472302Z] tests/test_transmissionCurve.py:124: FitsError [2018-01-24T17:04:12.472404Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.472417Z] [2018-01-24T17:04:12.472509Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.472607Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.472679Z] that was used when compiling the application program: [2018-01-24T17:04:12.472759Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.472825Z] Version included by the application program = 5 [2018-01-24T17:04:12.472838Z] [2018-01-24T17:04:12.472924Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.472966Z] with the CFITSIO library. [2018-01-24T17:04:12.473065Z] _____________________ ValidPolygonTestCase.testPersistence _____________________ [2018-01-24T17:04:12.473158Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.473170Z] [2018-01-24T17:04:12.473261Z] self = [2018-01-24T17:04:12.473274Z] [2018-01-24T17:04:12.473318Z] def testPersistence(self): [2018-01-24T17:04:12.473421Z] """Test that we can round-trip an ValidPolygon through FITS persistence.""" [2018-01-24T17:04:12.473506Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.473566Z] self.polygon.writeFits(filename) [2018-01-24T17:04:12.473653Z] > polygon2 = afwGeom.Polygon.readFits(filename) [2018-01-24T17:04:12.473691Z] E FitsError: [2018-01-24T17:04:12.473839Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.474068Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_validPolygon_testPersistence-9BpC_a.fits' with mode 'r' [2018-01-24T17:04:12.474117Z] E cfitsio error stack: [2018-01-24T17:04:12.474147Z] E {0} [2018-01-24T17:04:12.474388Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_validPolygon_testPersistence-9BpC_a.fits' with mode 'r' [2018-01-24T17:04:12.474437Z] E cfitsio error stack: [2018-01-24T17:04:12.474463Z] E ' [2018-01-24T17:04:12.474475Z] [2018-01-24T17:04:12.474530Z] tests/test_validPolygon.py:58: FitsError [2018-01-24T17:04:12.474641Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.474655Z] [2018-01-24T17:04:12.474745Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.474840Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.474910Z] that was used when compiling the application program: [2018-01-24T17:04:12.474976Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.475067Z] Version included by the application program = 5 [2018-01-24T17:04:12.475088Z] [2018-01-24T17:04:12.475178Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.475219Z] with the CFITSIO library. [2018-01-24T17:04:12.475330Z] _______________ WarpExposureTestCase.testMatchSwarpBilinearImage _______________ [2018-01-24T17:04:12.475439Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.475455Z] [2018-01-24T17:04:12.475576Z] self = [2018-01-24T17:04:12.475603Z] [2018-01-24T17:04:12.475664Z] def testMatchSwarpBilinearImage(self): [2018-01-24T17:04:12.475804Z] """Test that warpExposure matches swarp using a bilinear warping kernel [2018-01-24T17:04:12.475842Z] """ [2018-01-24T17:04:12.475945Z] > self.compareToSwarp("bilinear", useWarpExposure=False, atol=0.15) [2018-01-24T17:04:12.475966Z] [2018-01-24T17:04:12.476014Z] tests/test_warpExposure.py:337: [2018-01-24T17:04:12.476144Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.476167Z] [2018-01-24T17:04:12.476278Z] self = [2018-01-24T17:04:12.476431Z] kernelName = 'bilinear', useWarpExposure = False, useSubregion = False [2018-01-24T17:04:12.476547Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.476577Z] atol = 0.15 [2018-01-24T17:04:12.476590Z] [2018-01-24T17:04:12.476687Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.476746Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.476848Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.476938Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.477002Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.477090Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.477107Z] [2018-01-24T17:04:12.477209Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.477226Z] [2018-01-24T17:04:12.477260Z] Inputs: [2018-01-24T17:04:12.477362Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.477474Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.477585Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.477696Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.477804Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.477903Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.477996Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.478098Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.478194Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.478245Z] 0 disables the cache [2018-01-24T17:04:12.478367Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.478470Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.478548Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.478627Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.478655Z] """ [2018-01-24T17:04:12.478719Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.478756Z] kernelName, [2018-01-24T17:04:12.478905Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.478945Z] cacheSize, [2018-01-24T17:04:12.478985Z] interpLength, [2018-01-24T17:04:12.479007Z] ) [2018-01-24T17:04:12.479046Z] if useSubregion: [2018-01-24T17:04:12.479140Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.479261Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.479337Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.479414Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.479481Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.479572Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.479673Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.479709Z] else: [2018-01-24T17:04:12.479834Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.479890Z] E FitsError: [2018-01-24T17:04:12.480051Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.480278Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.480355Z] E cfitsio error stack: [2018-01-24T17:04:12.480406Z] E {0} [2018-01-24T17:04:12.480656Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.480708Z] E cfitsio error stack: [2018-01-24T17:04:12.480736Z] E ' [2018-01-24T17:04:12.480749Z] [2018-01-24T17:04:12.480817Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.480942Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.480974Z] [2018-01-24T17:04:12.481128Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.481244Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.481317Z] that was used when compiling the application program: [2018-01-24T17:04:12.481386Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.481454Z] Version included by the application program = 5 [2018-01-24T17:04:12.481467Z] [2018-01-24T17:04:12.481555Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.481596Z] with the CFITSIO library. [2018-01-24T17:04:12.481697Z] _____________ WarpExposureTestCase.testMatchSwarpLanczos2Exposure ______________ [2018-01-24T17:04:12.481791Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.481806Z] [2018-01-24T17:04:12.481917Z] self = [2018-01-24T17:04:12.481931Z] [2018-01-24T17:04:12.481993Z] def testMatchSwarpLanczos2Exposure(self): [2018-01-24T17:04:12.482094Z] """Test that warpExposure matches swarp using a lanczos2 warping kernel. [2018-01-24T17:04:12.482124Z] """ [2018-01-24T17:04:12.482204Z] > self.compareToSwarp("lanczos2", useWarpExposure=True) [2018-01-24T17:04:12.482217Z] [2018-01-24T17:04:12.482265Z] tests/test_warpExposure.py:353: [2018-01-24T17:04:12.482367Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.482379Z] [2018-01-24T17:04:12.482491Z] self = [2018-01-24T17:04:12.482580Z] kernelName = 'lanczos2', useWarpExposure = True, useSubregion = False [2018-01-24T17:04:12.482684Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.482709Z] atol = 0.01 [2018-01-24T17:04:12.482721Z] [2018-01-24T17:04:12.482799Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.482854Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.482955Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.483029Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.483091Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.483175Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.483191Z] [2018-01-24T17:04:12.483291Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.483307Z] [2018-01-24T17:04:12.483340Z] Inputs: [2018-01-24T17:04:12.483440Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.483538Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.483648Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.483759Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.483866Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.483964Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.484057Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.484158Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.484268Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.484333Z] 0 disables the cache [2018-01-24T17:04:12.484473Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.484607Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.484703Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.484798Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.484832Z] """ [2018-01-24T17:04:12.484897Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.484934Z] kernelName, [2018-01-24T17:04:12.485055Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.485091Z] cacheSize, [2018-01-24T17:04:12.485130Z] interpLength, [2018-01-24T17:04:12.485155Z] ) [2018-01-24T17:04:12.485194Z] if useSubregion: [2018-01-24T17:04:12.485287Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.485408Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.485483Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.485560Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.485626Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.485717Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.485802Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.485829Z] else: [2018-01-24T17:04:12.485917Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.485954Z] E FitsError: [2018-01-24T17:04:12.486098Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.486289Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.486363Z] E cfitsio error stack: [2018-01-24T17:04:12.486396Z] E {0} [2018-01-24T17:04:12.486613Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.486662Z] E cfitsio error stack: [2018-01-24T17:04:12.486689Z] E ' [2018-01-24T17:04:12.486702Z] [2018-01-24T17:04:12.486758Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.486857Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.486869Z] [2018-01-24T17:04:12.486959Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.487054Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.487124Z] that was used when compiling the application program: [2018-01-24T17:04:12.487190Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.487256Z] Version included by the application program = 5 [2018-01-24T17:04:12.487269Z] [2018-01-24T17:04:12.487354Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.487394Z] with the CFITSIO library. [2018-01-24T17:04:12.487492Z] _________________ TransmissionCurveTestCase.testExposureRecord _________________ [2018-01-24T17:04:12.487584Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.487596Z] [2018-01-24T17:04:12.487714Z] self = [2018-01-24T17:04:12.487738Z] [2018-01-24T17:04:12.487788Z] def testExposureRecord(self): [2018-01-24T17:04:12.487942Z] """Test that we can attach a TransmissionCurve to an ExposureRecord and round-trip it through I/O.""" [2018-01-24T17:04:12.488023Z] wavelengths = np.linspace(6200, 6400, 100) [2018-01-24T17:04:12.488113Z] curve = makeTestCurve(self.random, 6200, 6400, 0.0, 0.0) [2018-01-24T17:04:12.488236Z] tc1 = self.makeAndCheckSpatiallyConstant(curve, wavelengths, 0.0, 0.0) [2018-01-24T17:04:12.488381Z] cat1 = lsst.afw.table.ExposureCatalog(lsst.afw.table.ExposureTable.makeMinimalSchema()) [2018-01-24T17:04:12.488469Z] cat1.addNew().setTransmissionCurve(tc1) [2018-01-24T17:04:12.488576Z] self.assertTrue(cat1[0].getTransmissionCurve() is not None) [2018-01-24T17:04:12.488688Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.488748Z] cat1.writeFits(filename) [2018-01-24T17:04:12.488840Z] > cat2 = lsst.afw.table.ExposureCatalog.readFits(filename) [2018-01-24T17:04:12.488880Z] E FitsError: [2018-01-24T17:04:12.489052Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.489301Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testExposureRecord-x1Pf_a.fits' with mode 'r' [2018-01-24T17:04:12.489366Z] E cfitsio error stack: [2018-01-24T17:04:12.489399Z] E {0} [2018-01-24T17:04:12.489658Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testExposureRecord-x1Pf_a.fits' with mode 'r' [2018-01-24T17:04:12.489708Z] E cfitsio error stack: [2018-01-24T17:04:12.489736Z] E ' [2018-01-24T17:04:12.489748Z] [2018-01-24T17:04:12.489812Z] tests/test_transmissionCurve.py:386: FitsError [2018-01-24T17:04:12.489926Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.489939Z] [2018-01-24T17:04:12.490029Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.490125Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.490195Z] that was used when compiling the application program: [2018-01-24T17:04:12.490261Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.490328Z] Version included by the application program = 5 [2018-01-24T17:04:12.490340Z] [2018-01-24T17:04:12.490425Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.490465Z] with the CFITSIO library. [2018-01-24T17:04:12.490563Z] _____________________ TransmissionCurveTestCase.testRadial _____________________ [2018-01-24T17:04:12.490656Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.490668Z] [2018-01-24T17:04:12.490766Z] self = [2018-01-24T17:04:12.490778Z] [2018-01-24T17:04:12.490817Z] def testRadial(self): [2018-01-24T17:04:12.490901Z] """Test the functionality of radial TransmissionCurves.""" [2018-01-24T17:04:12.490977Z] tc, wavelengths, radii, curve2d = self.makeRadial() [2018-01-24T17:04:12.491007Z] [2018-01-24T17:04:12.491099Z] # Test at exactly the radii and wavelengths we initialized with. [2018-01-24T17:04:12.491159Z] for n, radius in enumerate(radii): [2018-01-24T17:04:12.491240Z] rot = lsst.afw.geom.LinearTransform.makeRotation( [2018-01-24T17:04:12.491337Z] 2.0*np.pi*self.random.rand()*lsst.afw.geom.radians [2018-01-24T17:04:12.491364Z] ) [2018-01-24T17:04:12.491431Z] p0 = lsst.afw.geom.Point2D(0.0, radius) [2018-01-24T17:04:12.491470Z] p1 = rot(p0) [2018-01-24T17:04:12.491526Z] self.assertFloatsAlmostEqual( [2018-01-24T17:04:12.491587Z] curve2d(wavelengths, radius), [2018-01-24T17:04:12.491648Z] tc.sampleAt(p0, wavelengths), [2018-01-24T17:04:12.491689Z] rtol=1E-13 [2018-01-24T17:04:12.491715Z] ) [2018-01-24T17:04:12.491772Z] self.assertFloatsAlmostEqual( [2018-01-24T17:04:12.491833Z] curve2d(wavelengths, radius), [2018-01-24T17:04:12.491894Z] tc.sampleAt(p1, wavelengths), [2018-01-24T17:04:12.491935Z] rtol=1E-13 [2018-01-24T17:04:12.491961Z] ) [2018-01-24T17:04:12.491977Z] [2018-01-24T17:04:12.492063Z] # Test at some other random points in radius and wavelength. [2018-01-24T17:04:12.492167Z] wl2 = np.linspace(self.minWavelength, self.maxWavelength, 151) [2018-01-24T17:04:12.492229Z] for point in self.points: [2018-01-24T17:04:12.492312Z] radius = (point.getX()**2 + point.getY()**2)**0.5 [2018-01-24T17:04:12.492371Z] self.assertFloatsAlmostEqual( [2018-01-24T17:04:12.492437Z] curve2d(wl2, radius), [2018-01-24T17:04:12.492491Z] tc.sampleAt(point, wl2), [2018-01-24T17:04:12.492567Z] rtol=1E-2, atol=1E-2 [2018-01-24T17:04:12.492604Z] ) [2018-01-24T17:04:12.492623Z] [2018-01-24T17:04:12.492699Z] # Test persistence for radial TransmissionCurves [2018-01-24T17:04:12.492749Z] > self.checkPersistence(tc) [2018-01-24T17:04:12.492761Z] [2018-01-24T17:04:12.492814Z] tests/test_transmissionCurve.py:323: [2018-01-24T17:04:12.492926Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.492950Z] [2018-01-24T17:04:12.493048Z] self = [2018-01-24T17:04:12.493146Z] tc = [2018-01-24T17:04:12.493371Z] points = [Point2D(0.4170220047, 0.7203244934), Point2D(0.0001143748173, 0.3023325726), Point2D(0.1467558908, 0.09233859477), Point2D(0.1862602114, 0.345560727), Point2D(0.3967674742, 0.538816734)] [2018-01-24T17:04:12.493386Z] [2018-01-24T17:04:12.493450Z] def checkPersistence(self, tc, points=None): [2018-01-24T17:04:12.493544Z] """Test that a TransmissionCurve round-trips through persistence.""" [2018-01-24T17:04:12.493611Z] if points is None: [2018-01-24T17:04:12.493661Z] points = self.points [2018-01-24T17:04:12.493746Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.493795Z] tc.writeFits(filename) [2018-01-24T17:04:12.493882Z] > tc2 = lsst.afw.image.TransmissionCurve.readFits(filename) [2018-01-24T17:04:12.493920Z] E FitsError: [2018-01-24T17:04:12.494064Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.494278Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testRadial-2ndm0e.fits' with mode 'r' [2018-01-24T17:04:12.494327Z] E cfitsio error stack: [2018-01-24T17:04:12.494357Z] E {0} [2018-01-24T17:04:12.494597Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testRadial-2ndm0e.fits' with mode 'r' [2018-01-24T17:04:12.494645Z] E cfitsio error stack: [2018-01-24T17:04:12.494671Z] E ' [2018-01-24T17:04:12.494683Z] [2018-01-24T17:04:12.494745Z] tests/test_transmissionCurve.py:124: FitsError [2018-01-24T17:04:12.494844Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.494856Z] [2018-01-24T17:04:12.494947Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.495042Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.495112Z] that was used when compiling the application program: [2018-01-24T17:04:12.495178Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.495244Z] Version included by the application program = 5 [2018-01-24T17:04:12.495257Z] [2018-01-24T17:04:12.495342Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.495381Z] with the CFITSIO library. [2018-01-24T17:04:12.495479Z] __________________ WarpExposureTestCase.testNullWarpExposure ___________________ [2018-01-24T17:04:12.495572Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.495585Z] [2018-01-24T17:04:12.495682Z] self = [2018-01-24T17:04:12.495713Z] interpLength = 10 [2018-01-24T17:04:12.495725Z] [2018-01-24T17:04:12.495804Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.495873Z] def testNullWarpExposure(self, interpLength=10): [2018-01-24T17:04:12.495966Z] """Test that warpExposure maps an image onto itself. [2018-01-24T17:04:12.496006Z] [2018-01-24T17:04:12.496055Z] Note: [2018-01-24T17:04:12.496166Z] - NO_DATA and off-CCD pixels must be ignored [2018-01-24T17:04:12.496287Z] - bad mask pixels get smeared out so we have to excluded all bad mask pixels [2018-01-24T17:04:12.496385Z] from the output image when comparing masks. [2018-01-24T17:04:12.496419Z] """ [2018-01-24T17:04:12.496520Z] filterPolicyFile = pexPolicy.DefaultPolicyFile( [2018-01-24T17:04:12.496607Z] "afw", "SdssFilters.paf", "tests") [2018-01-24T17:04:12.496683Z] filterPolicy = pexPolicy.Policy.createPolicy( [2018-01-24T17:04:12.496779Z] filterPolicyFile, filterPolicyFile.getRepositoryPath(), True) [2018-01-24T17:04:12.496873Z] imageUtils.defineFiltersFromPolicy(filterPolicy, reset=True) [2018-01-24T17:04:12.496904Z] [2018-01-24T17:04:12.497006Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.497055Z] E FitsError: [2018-01-24T17:04:12.497223Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.497416Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.497461Z] E cfitsio error stack: [2018-01-24T17:04:12.497487Z] E {0} [2018-01-24T17:04:12.497702Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.497746Z] E cfitsio error stack: [2018-01-24T17:04:12.497781Z] E ' [2018-01-24T17:04:12.497798Z] [2018-01-24T17:04:12.497857Z] tests/test_warpExposure.py:137: FitsError [2018-01-24T17:04:12.497959Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.497972Z] [2018-01-24T17:04:12.498065Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.498164Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.498237Z] that was used when compiling the application program: [2018-01-24T17:04:12.498306Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.498375Z] Version included by the application program = 5 [2018-01-24T17:04:12.498387Z] [2018-01-24T17:04:12.498476Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.498516Z] with the CFITSIO library. [2018-01-24T17:04:12.498619Z] ____________ WarpExposureTestCase.testMatchSwarpLanczos2SubExposure ____________ [2018-01-24T17:04:12.498713Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.498726Z] [2018-01-24T17:04:12.498841Z] self = [2018-01-24T17:04:12.498854Z] [2018-01-24T17:04:12.498920Z] def testMatchSwarpLanczos2SubExposure(self): [2018-01-24T17:04:12.499043Z] """Test that warpExposure matches swarp using a lanczos2 warping kernel with a subexposure [2018-01-24T17:04:12.499073Z] """ [2018-01-24T17:04:12.499131Z] for useDeepCopy in (False, True): [2018-01-24T17:04:12.499217Z] self.compareToSwarp("lanczos2", useWarpExposure=True, [2018-01-24T17:04:12.499313Z] > useSubregion=True, useDeepCopy=useDeepCopy) [2018-01-24T17:04:12.499326Z] [2018-01-24T17:04:12.499375Z] tests/test_warpExposure.py:360: [2018-01-24T17:04:12.499477Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.499490Z] [2018-01-24T17:04:12.499606Z] self = [2018-01-24T17:04:12.499695Z] kernelName = 'lanczos2', useWarpExposure = True, useSubregion = True [2018-01-24T17:04:12.499788Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.499813Z] atol = 0.01 [2018-01-24T17:04:12.499826Z] [2018-01-24T17:04:12.499907Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.499977Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.500096Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.500173Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.500238Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.500324Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.500354Z] [2018-01-24T17:04:12.500456Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.500473Z] [2018-01-24T17:04:12.500507Z] Inputs: [2018-01-24T17:04:12.500609Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.500708Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.500821Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.500963Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.501098Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.501232Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.501358Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.501468Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.501586Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.501658Z] 0 disables the cache [2018-01-24T17:04:12.501805Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.501925Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.502009Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.502088Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.502117Z] """ [2018-01-24T17:04:12.502180Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.502217Z] kernelName, [2018-01-24T17:04:12.502339Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.502375Z] cacheSize, [2018-01-24T17:04:12.502414Z] interpLength, [2018-01-24T17:04:12.502436Z] ) [2018-01-24T17:04:12.502475Z] if useSubregion: [2018-01-24T17:04:12.502568Z] > originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.502619Z] E FitsError: [2018-01-24T17:04:12.502767Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.502973Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.503022Z] E cfitsio error stack: [2018-01-24T17:04:12.503051Z] E {0} [2018-01-24T17:04:12.503268Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.503317Z] E cfitsio error stack: [2018-01-24T17:04:12.503343Z] E ' [2018-01-24T17:04:12.503355Z] [2018-01-24T17:04:12.503412Z] tests/test_warpExposure.py:666: FitsError [2018-01-24T17:04:12.503510Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.503522Z] [2018-01-24T17:04:12.503612Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.503707Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.503776Z] that was used when compiling the application program: [2018-01-24T17:04:12.503843Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.503910Z] Version included by the application program = 5 [2018-01-24T17:04:12.503922Z] [2018-01-24T17:04:12.504007Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.504047Z] with the CFITSIO library. [2018-01-24T17:04:12.504145Z] _______________ WarpExposureTestCase.testMatchSwarpLanczos3Image _______________ [2018-01-24T17:04:12.504237Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.504249Z] [2018-01-24T17:04:12.504354Z] self = [2018-01-24T17:04:12.504366Z] [2018-01-24T17:04:12.504424Z] def testMatchSwarpLanczos3Image(self): [2018-01-24T17:04:12.504521Z] """Test that warpExposure matches swarp using a lanczos2 warping kernel [2018-01-24T17:04:12.504550Z] """ [2018-01-24T17:04:12.504629Z] > self.compareToSwarp("lanczos3", useWarpExposure=False) [2018-01-24T17:04:12.504642Z] [2018-01-24T17:04:12.504688Z] tests/test_warpExposure.py:365: [2018-01-24T17:04:12.504787Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.504799Z] [2018-01-24T17:04:12.504930Z] self = [2018-01-24T17:04:12.505036Z] kernelName = 'lanczos3', useWarpExposure = False, useSubregion = False [2018-01-24T17:04:12.505160Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.505206Z] atol = 0.01 [2018-01-24T17:04:12.505221Z] [2018-01-24T17:04:12.505315Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.505389Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.505527Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.505628Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.505693Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.505813Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.505839Z] [2018-01-24T17:04:12.505958Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.505976Z] [2018-01-24T17:04:12.506012Z] Inputs: [2018-01-24T17:04:12.506136Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.506271Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.506433Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.506565Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.506680Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.506780Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.506874Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.506975Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.507071Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.507122Z] 0 disables the cache [2018-01-24T17:04:12.507243Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.507344Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.507422Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.507501Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.507529Z] """ [2018-01-24T17:04:12.507593Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.507631Z] kernelName, [2018-01-24T17:04:12.507752Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.507789Z] cacheSize, [2018-01-24T17:04:12.507828Z] interpLength, [2018-01-24T17:04:12.507850Z] ) [2018-01-24T17:04:12.507889Z] if useSubregion: [2018-01-24T17:04:12.507982Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.508103Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.508178Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.508255Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.508321Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.508411Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.508523Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.508553Z] else: [2018-01-24T17:04:12.508643Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.508680Z] E FitsError: [2018-01-24T17:04:12.508824Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.509016Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.509065Z] E cfitsio error stack: [2018-01-24T17:04:12.509095Z] E {0} [2018-01-24T17:04:12.509312Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.509361Z] E cfitsio error stack: [2018-01-24T17:04:12.509387Z] E ' [2018-01-24T17:04:12.509399Z] [2018-01-24T17:04:12.509456Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.509555Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.509568Z] [2018-01-24T17:04:12.509672Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.509799Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.509877Z] that was used when compiling the application program: [2018-01-24T17:04:12.509945Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.510026Z] Version included by the application program = 5 [2018-01-24T17:04:12.510047Z] [2018-01-24T17:04:12.510138Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.510180Z] with the CFITSIO library. [2018-01-24T17:04:12.510294Z] _____________ WarpExposureTestCase.testMatchSwarpBilinearExposure ______________ [2018-01-24T17:04:12.510411Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.510431Z] [2018-01-24T17:04:12.510581Z] self = [2018-01-24T17:04:12.510615Z] [2018-01-24T17:04:12.510680Z] def testMatchSwarpBilinearExposure(self): [2018-01-24T17:04:12.510793Z] """Test that warpExposure matches swarp using a bilinear warping kernel [2018-01-24T17:04:12.510840Z] """ [2018-01-24T17:04:12.510943Z] self.compareToSwarp("bilinear", useWarpExposure=True, [2018-01-24T17:04:12.511041Z] > useSubregion=False, useDeepCopy=True) [2018-01-24T17:04:12.511064Z] [2018-01-24T17:04:12.511113Z] tests/test_warpExposure.py:343: [2018-01-24T17:04:12.511212Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.511226Z] [2018-01-24T17:04:12.511334Z] self = [2018-01-24T17:04:12.511422Z] kernelName = 'bilinear', useWarpExposure = True, useSubregion = False [2018-01-24T17:04:12.511511Z] useDeepCopy = True, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.511536Z] atol = 0.01 [2018-01-24T17:04:12.511548Z] [2018-01-24T17:04:12.511627Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.511683Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.511786Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.511860Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.511922Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.512008Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.512025Z] [2018-01-24T17:04:12.512123Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.512140Z] [2018-01-24T17:04:12.512173Z] Inputs: [2018-01-24T17:04:12.512272Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.512384Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.512499Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.512613Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.512725Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.512827Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.512946Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.513043Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.513133Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.513182Z] 0 disables the cache [2018-01-24T17:04:12.513330Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.513435Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.513516Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.513609Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.513638Z] """ [2018-01-24T17:04:12.513702Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.513740Z] kernelName, [2018-01-24T17:04:12.513869Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.513904Z] cacheSize, [2018-01-24T17:04:12.513941Z] interpLength, [2018-01-24T17:04:12.513962Z] ) [2018-01-24T17:04:12.513998Z] if useSubregion: [2018-01-24T17:04:12.514087Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.514204Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.514294Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.514375Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.514443Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.514571Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.514674Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.514715Z] else: [2018-01-24T17:04:12.514805Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.514843Z] E FitsError: [2018-01-24T17:04:12.514988Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.515179Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.515228Z] E cfitsio error stack: [2018-01-24T17:04:12.515258Z] E {0} [2018-01-24T17:04:12.515483Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.515529Z] E cfitsio error stack: [2018-01-24T17:04:12.515554Z] E ' [2018-01-24T17:04:12.515566Z] [2018-01-24T17:04:12.515619Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.515713Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.515724Z] [2018-01-24T17:04:12.515809Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.515957Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.516033Z] that was used when compiling the application program: [2018-01-24T17:04:12.516101Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.516170Z] Version included by the application program = 5 [2018-01-24T17:04:12.516195Z] [2018-01-24T17:04:12.516291Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.516328Z] with the CFITSIO library. [2018-01-24T17:04:12.516421Z] _________________ WarpExposureTestCase.testMatchSwarpLanczos3 __________________ [2018-01-24T17:04:12.516508Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.516520Z] [2018-01-24T17:04:12.516614Z] self = [2018-01-24T17:04:12.516626Z] [2018-01-24T17:04:12.516689Z] def testMatchSwarpLanczos3(self): [2018-01-24T17:04:12.516802Z] """Test that warpExposure matches swarp using a lanczos4 warping kernel. [2018-01-24T17:04:12.516831Z] """ [2018-01-24T17:04:12.516911Z] > self.compareToSwarp("lanczos3", useWarpExposure=True) [2018-01-24T17:04:12.516924Z] [2018-01-24T17:04:12.516972Z] tests/test_warpExposure.py:370: [2018-01-24T17:04:12.517097Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.517109Z] [2018-01-24T17:04:12.517203Z] self = [2018-01-24T17:04:12.517285Z] kernelName = 'lanczos3', useWarpExposure = True, useSubregion = False [2018-01-24T17:04:12.517370Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.517393Z] atol = 0.01 [2018-01-24T17:04:12.517404Z] [2018-01-24T17:04:12.517478Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.517546Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.517693Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.517782Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.517874Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.517989Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.518010Z] [2018-01-24T17:04:12.518128Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.518149Z] [2018-01-24T17:04:12.518182Z] Inputs: [2018-01-24T17:04:12.518293Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.518430Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.518555Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.518687Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.518812Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.518933Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.519049Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.519163Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.519278Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.519336Z] 0 disables the cache [2018-01-24T17:04:12.519482Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.519642Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.519759Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.519859Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.519895Z] """ [2018-01-24T17:04:12.520008Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.520049Z] kernelName, [2018-01-24T17:04:12.520189Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.520244Z] cacheSize, [2018-01-24T17:04:12.520301Z] interpLength, [2018-01-24T17:04:12.520330Z] ) [2018-01-24T17:04:12.520371Z] if useSubregion: [2018-01-24T17:04:12.520469Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.520595Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.520675Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.520755Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.520825Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.520919Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.521009Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.521049Z] else: [2018-01-24T17:04:12.521139Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.521176Z] E FitsError: [2018-01-24T17:04:12.521325Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.521520Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.521570Z] E cfitsio error stack: [2018-01-24T17:04:12.521600Z] E {0} [2018-01-24T17:04:12.521836Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.521886Z] E cfitsio error stack: [2018-01-24T17:04:12.521914Z] E ' [2018-01-24T17:04:12.521927Z] [2018-01-24T17:04:12.521986Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.522089Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.522102Z] [2018-01-24T17:04:12.522196Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.522295Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.522368Z] that was used when compiling the application program: [2018-01-24T17:04:12.522437Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.522507Z] Version included by the application program = 5 [2018-01-24T17:04:12.522519Z] [2018-01-24T17:04:12.522609Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.522650Z] with the CFITSIO library. [2018-01-24T17:04:12.522753Z] _______________________ WarpExposureTestCase.testNullWcs _______________________ [2018-01-24T17:04:12.522849Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.522862Z] [2018-01-24T17:04:12.522955Z] self = [2018-01-24T17:04:12.522988Z] interpLength = 10 [2018-01-24T17:04:12.523013Z] [2018-01-24T17:04:12.523092Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.523152Z] def testNullWcs(self, interpLength=10): [2018-01-24T17:04:12.523248Z] """Cannot warp from or into an exposure without a Wcs. [2018-01-24T17:04:12.523292Z] """ [2018-01-24T17:04:12.523381Z] > exposureWithWcs = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.523427Z] E FitsError: [2018-01-24T17:04:12.523617Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.523849Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.523903Z] E cfitsio error stack: [2018-01-24T17:04:12.523930Z] E {0} [2018-01-24T17:04:12.524159Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.524205Z] E cfitsio error stack: [2018-01-24T17:04:12.524228Z] E ' [2018-01-24T17:04:12.524241Z] [2018-01-24T17:04:12.524299Z] tests/test_warpExposure.py:204: FitsError [2018-01-24T17:04:12.524412Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.524425Z] [2018-01-24T17:04:12.524515Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.524610Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.524680Z] that was used when compiling the application program: [2018-01-24T17:04:12.524746Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.524812Z] Version included by the application program = 5 [2018-01-24T17:04:12.524824Z] [2018-01-24T17:04:12.524909Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.524950Z] with the CFITSIO library. [2018-01-24T17:04:12.525048Z] ____________________ PersistenceTestCase.testLosslessFloat _____________________ [2018-01-24T17:04:12.525139Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.525151Z] [2018-01-24T17:04:12.525247Z] self = [2018-01-24T17:04:12.525260Z] [2018-01-24T17:04:12.525306Z] def testLosslessFloat(self): [2018-01-24T17:04:12.525386Z] """Test lossless compression of floating-point image""" [2018-01-24T17:04:12.525470Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.525581Z] algorithmList = ("GZIP", "GZIP_SHUFFLE") # Lossless float compression requires GZIP [2018-01-24T17:04:12.525674Z] for cls, algorithm in itertools.product(classList, algorithmList): [2018-01-24T17:04:12.525729Z] image = self.makeImage(cls) [2018-01-24T17:04:12.525855Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm)) [2018-01-24T17:04:12.525946Z] > self.checkCompressedImage(cls, image, compression, atol=0.0) [2018-01-24T17:04:12.525958Z] [2018-01-24T17:04:12.526007Z] tests/test_fitsCompression.py:512: [2018-01-24T17:04:12.526106Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.526181Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.526274Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.526343Z] tests/test_fitsCompression.py:816: in readWriteImage [2018-01-24T17:04:12.526433Z] return persistUnpersist(ImageClass, image, filename, additionalData) [2018-01-24T17:04:12.526531Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.526543Z] [2018-01-24T17:04:12.526615Z] ImageClass = [2018-01-24T17:04:12.526713Z] image = [2018-01-24T17:04:12.526895Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessFloat-8unh_q.PersistenceTestCase.fits' [2018-01-24T17:04:12.527050Z] additionalData = [2018-01-24T17:04:12.527074Z] [2018-01-24T17:04:12.527211Z] def persistUnpersist(ImageClass, image, filename, additionalData): [2018-01-24T17:04:12.527324Z] """Use the persistence framework to persist and unpersist an image [2018-01-24T17:04:12.527353Z] [2018-01-24T17:04:12.527388Z] Parameters [2018-01-24T17:04:12.527421Z] ---------- [2018-01-24T17:04:12.527512Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.527554Z] Class of image. [2018-01-24T17:04:12.527643Z] image : `lsst.afw.image.Image` or `lsst.afw.image.MaskedImage` [2018-01-24T17:04:12.527688Z] Image to compress. [2018-01-24T17:04:12.527726Z] filename : `str` [2018-01-24T17:04:12.527771Z] Filename to write. [2018-01-24T17:04:12.527839Z] additionalData : `lsst.daf.base.PropertySet` [2018-01-24T17:04:12.527909Z] Additionl data for persistence framework. [2018-01-24T17:04:12.527926Z] [2018-01-24T17:04:12.527955Z] Returns [2018-01-24T17:04:12.527984Z] ------- [2018-01-24T17:04:12.528033Z] unpersisted : `ImageClass` [2018-01-24T17:04:12.528082Z] The unpersisted image. [2018-01-24T17:04:12.528105Z] """ [2018-01-24T17:04:12.528163Z] additionalData.set("visit", 12345) [2018-01-24T17:04:12.528215Z] additionalData.set("ccd", 67) [2018-01-24T17:04:12.528232Z] [2018-01-24T17:04:12.528346Z] persistence = lsst.daf.persistence.Persistence.getPersistence(lsst.pex.policy.Policy()) [2018-01-24T17:04:12.528437Z] logicalLocation = lsst.daf.persistence.LogicalLocation(filename) [2018-01-24T17:04:12.528536Z] storage = persistence.getRetrieveStorage("FitsStorage", logicalLocation) [2018-01-24T17:04:12.528619Z] storageList = lsst.daf.persistence.StorageList([storage]) [2018-01-24T17:04:12.528635Z] [2018-01-24T17:04:12.528716Z] persistence.persist(image, storageList, additionalData) [2018-01-24T17:04:12.528734Z] [2018-01-24T17:04:12.528769Z] classMenu = { [2018-01-24T17:04:12.528829Z] lsst.afw.image.ImageU: "ImageU", [2018-01-24T17:04:12.528889Z] lsst.afw.image.ImageI: "ImageI", [2018-01-24T17:04:12.528949Z] lsst.afw.image.ImageL: "ImageL", [2018-01-24T17:04:12.529009Z] lsst.afw.image.ImageF: "ImageF", [2018-01-24T17:04:12.529068Z] lsst.afw.image.ImageD: "ImageD", [2018-01-24T17:04:12.529124Z] lsst.afw.image.Mask: "Mask", [2018-01-24T17:04:12.529197Z] lsst.afw.image.MaskedImageF: "MaskedImageF", [2018-01-24T17:04:12.529223Z] } [2018-01-24T17:04:12.529351Z] > return persistence.unsafeRetrieve(classMenu[ImageClass], storageList, lsst.daf.base.PropertySet()) [2018-01-24T17:04:12.529384Z] E FitsError: [2018-01-24T17:04:12.529524Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.529763Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessFloat-8unh_q.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.529807Z] E cfitsio error stack: [2018-01-24T17:04:12.529876Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.529986Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.530013Z] E END [2018-01-24T17:04:12.530083Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.530191Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.530218Z] E END [2018-01-24T17:04:12.530358Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.530474Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.530506Z] E END [2018-01-24T17:04:12.530588Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.530692Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.530721Z] E END [2018-01-24T17:04:12.530805Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.530924Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.531003Z] E END [2018-01-24T17:04:12.531085Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.531185Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.531213Z] E END [2018-01-24T17:04:12.531287Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.531315Z] E {0} [2018-01-24T17:04:12.531609Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessFloat-8unh_q.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.531667Z] E cfitsio error stack: [2018-01-24T17:04:12.531742Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.531864Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.531899Z] E END [2018-01-24T17:04:12.531971Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.532068Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.532107Z] E END [2018-01-24T17:04:12.532176Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.532269Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.532296Z] E END [2018-01-24T17:04:12.532365Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.532459Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.532485Z] E END [2018-01-24T17:04:12.532554Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.532647Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.532673Z] E END [2018-01-24T17:04:12.532742Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.532835Z] E Extension doesn't start with SIMPLE or XTENSION keyword. (ffrhdu) [2018-01-24T17:04:12.532862Z] E END [2018-01-24T17:04:12.532931Z] E Error while closing HDU number 0 (ffchdu). [2018-01-24T17:04:12.532953Z] E ' [2018-01-24T17:04:12.532965Z] [2018-01-24T17:04:12.533025Z] tests/test_fitsCompression.py:785: FitsError [2018-01-24T17:04:12.533124Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.533136Z] [2018-01-24T17:04:12.533226Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.533322Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.533394Z] that was used when compiling the application program: [2018-01-24T17:04:12.533461Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.533543Z] Version included by the application program = 5 [2018-01-24T17:04:12.533556Z] [2018-01-24T17:04:12.533644Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.533685Z] with the CFITSIO library. [2018-01-24T17:04:12.533787Z] ____________________ WarpExposureTestCase.testNullWarpImage ____________________ [2018-01-24T17:04:12.533881Z] [gw13] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.533894Z] [2018-01-24T17:04:12.533991Z] self = [2018-01-24T17:04:12.534022Z] interpLength = 10 [2018-01-24T17:04:12.534035Z] [2018-01-24T17:04:12.534115Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.534183Z] def testNullWarpImage(self, interpLength=10): [2018-01-24T17:04:12.534259Z] """Test that warpImage maps an image onto itself. [2018-01-24T17:04:12.534288Z] """ [2018-01-24T17:04:12.534375Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.534409Z] E FitsError: [2018-01-24T17:04:12.534553Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.534758Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.534803Z] E cfitsio error stack: [2018-01-24T17:04:12.534828Z] E {0} [2018-01-24T17:04:12.535057Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.535118Z] E cfitsio error stack: [2018-01-24T17:04:12.535153Z] E ' [2018-01-24T17:04:12.535173Z] [2018-01-24T17:04:12.535232Z] tests/test_warpExposure.py:181: FitsError [2018-01-24T17:04:12.535341Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.535361Z] [2018-01-24T17:04:12.535453Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.535552Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.535625Z] that was used when compiling the application program: [2018-01-24T17:04:12.535713Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.535785Z] Version included by the application program = 5 [2018-01-24T17:04:12.535798Z] [2018-01-24T17:04:12.535896Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.535945Z] with the CFITSIO library. [2018-01-24T17:04:12.536049Z] _______________________ WarpExposureTestCase.testNonIcrs _______________________ [2018-01-24T17:04:12.536143Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.536157Z] [2018-01-24T17:04:12.536259Z] self = [2018-01-24T17:04:12.536283Z] [2018-01-24T17:04:12.536383Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.536443Z] def testNonIcrs(self): [2018-01-24T17:04:12.536572Z] """Test that warping to a non-ICRS-like coordinate system produces different results [2018-01-24T17:04:12.536597Z] [2018-01-24T17:04:12.536708Z] It would be better to also test that the results are as expected, [2018-01-24T17:04:12.536808Z] but I have not been able to get swarp to perform this operation, [2018-01-24T17:04:12.536914Z] so have not found an independent means of generating the expected results. [2018-01-24T17:04:12.536943Z] """ [2018-01-24T17:04:12.536989Z] kernelName = "lanczos3" [2018-01-24T17:04:12.537023Z] rtol = 4e-5 [2018-01-24T17:04:12.537056Z] atol = 1e-2 [2018-01-24T17:04:12.537120Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.537158Z] kernelName, [2018-01-24T17:04:12.537181Z] ) [2018-01-24T17:04:12.537197Z] [2018-01-24T17:04:12.537295Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.537329Z] E FitsError: [2018-01-24T17:04:12.537474Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.537687Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.537729Z] E cfitsio error stack: [2018-01-24T17:04:12.537754Z] E {0} [2018-01-24T17:04:12.537957Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.537999Z] E cfitsio error stack: [2018-01-24T17:04:12.538020Z] E ' [2018-01-24T17:04:12.538031Z] [2018-01-24T17:04:12.538085Z] tests/test_warpExposure.py:402: FitsError [2018-01-24T17:04:12.538210Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.538249Z] [2018-01-24T17:04:12.538344Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.538444Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.538516Z] that was used when compiling the application program: [2018-01-24T17:04:12.538585Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.538654Z] Version included by the application program = 5 [2018-01-24T17:04:12.538667Z] [2018-01-24T17:04:12.538755Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.538796Z] with the CFITSIO library. [2018-01-24T17:04:12.538898Z] _________________ WarpExposureTestCase.testMatchSwarpLanczos4 __________________ [2018-01-24T17:04:12.538993Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.539006Z] [2018-01-24T17:04:12.539109Z] self = [2018-01-24T17:04:12.539122Z] [2018-01-24T17:04:12.539176Z] def testMatchSwarpLanczos4(self): [2018-01-24T17:04:12.539291Z] """Test that warpExposure matches swarp using a lanczos4 warping kernel. [2018-01-24T17:04:12.539319Z] """ [2018-01-24T17:04:12.539399Z] > self.compareToSwarp("lanczos4", useWarpExposure=True) [2018-01-24T17:04:12.539412Z] [2018-01-24T17:04:12.539458Z] tests/test_warpExposure.py:380: [2018-01-24T17:04:12.539558Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.539570Z] [2018-01-24T17:04:12.539684Z] self = [2018-01-24T17:04:12.539801Z] kernelName = 'lanczos4', useWarpExposure = True, useSubregion = False [2018-01-24T17:04:12.539902Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.539928Z] atol = 0.01 [2018-01-24T17:04:12.539941Z] [2018-01-24T17:04:12.540033Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.540129Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.540239Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.540317Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.540381Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.540467Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.540484Z] [2018-01-24T17:04:12.540593Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.540627Z] [2018-01-24T17:04:12.540667Z] Inputs: [2018-01-24T17:04:12.540782Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.540925Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.541059Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.541178Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.541286Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.541385Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.541479Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.541580Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.541675Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.541726Z] 0 disables the cache [2018-01-24T17:04:12.541849Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.541950Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.542028Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.542106Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.542135Z] """ [2018-01-24T17:04:12.542199Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.542236Z] kernelName, [2018-01-24T17:04:12.542358Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.542394Z] cacheSize, [2018-01-24T17:04:12.542434Z] interpLength, [2018-01-24T17:04:12.542456Z] ) [2018-01-24T17:04:12.542494Z] if useSubregion: [2018-01-24T17:04:12.542587Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.542708Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.542783Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.542861Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.542927Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.543016Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.543102Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.543129Z] else: [2018-01-24T17:04:12.543218Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.543255Z] E FitsError: [2018-01-24T17:04:12.543399Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.543590Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.543638Z] E cfitsio error stack: [2018-01-24T17:04:12.543668Z] E {0} [2018-01-24T17:04:12.543886Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.543934Z] E cfitsio error stack: [2018-01-24T17:04:12.543960Z] E ' [2018-01-24T17:04:12.543973Z] [2018-01-24T17:04:12.544041Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.544168Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.544190Z] [2018-01-24T17:04:12.544294Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.544400Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.544473Z] that was used when compiling the application program: [2018-01-24T17:04:12.544541Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.544620Z] Version included by the application program = 5 [2018-01-24T17:04:12.544632Z] [2018-01-24T17:04:12.544733Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.544773Z] with the CFITSIO library. [2018-01-24T17:04:12.544910Z] ______________ WarpExposureTestCase.testMatchSwarpNearestExposure ______________ [2018-01-24T17:04:12.545039Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.545065Z] [2018-01-24T17:04:12.545178Z] self = [2018-01-24T17:04:12.545191Z] [2018-01-24T17:04:12.545253Z] def testMatchSwarpNearestExposure(self): [2018-01-24T17:04:12.545375Z] """Test that warpExposure matches swarp using a nearest neighbor warping kernel [2018-01-24T17:04:12.545404Z] """ [2018-01-24T17:04:12.545490Z] > self.compareToSwarp("nearest", useWarpExposure=True, atol=60) [2018-01-24T17:04:12.545517Z] [2018-01-24T17:04:12.545565Z] tests/test_warpExposure.py:385: [2018-01-24T17:04:12.545693Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.545709Z] [2018-01-24T17:04:12.545833Z] self = [2018-01-24T17:04:12.545919Z] kernelName = 'nearest', useWarpExposure = True, useSubregion = False [2018-01-24T17:04:12.546009Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.546032Z] atol = 60 [2018-01-24T17:04:12.546044Z] [2018-01-24T17:04:12.546122Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.546192Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.546297Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.546374Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.546437Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.546535Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.546552Z] [2018-01-24T17:04:12.546650Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.546667Z] [2018-01-24T17:04:12.546713Z] Inputs: [2018-01-24T17:04:12.546816Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.546917Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.547031Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.547144Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.547255Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.547356Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.547452Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.547555Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.547653Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.547706Z] 0 disables the cache [2018-01-24T17:04:12.547832Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.547935Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.548016Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.548097Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.548126Z] """ [2018-01-24T17:04:12.548192Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.548230Z] kernelName, [2018-01-24T17:04:12.548374Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.548426Z] cacheSize, [2018-01-24T17:04:12.548472Z] interpLength, [2018-01-24T17:04:12.548497Z] ) [2018-01-24T17:04:12.548538Z] if useSubregion: [2018-01-24T17:04:12.548650Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.548814Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.548913Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.549003Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.549075Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.549181Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.549303Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.549335Z] else: [2018-01-24T17:04:12.549442Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.549492Z] E FitsError: [2018-01-24T17:04:12.549643Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.549842Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.549892Z] E cfitsio error stack: [2018-01-24T17:04:12.549923Z] E {0} [2018-01-24T17:04:12.550149Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.550199Z] E cfitsio error stack: [2018-01-24T17:04:12.550226Z] E ' [2018-01-24T17:04:12.550239Z] [2018-01-24T17:04:12.550297Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.550411Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.550425Z] [2018-01-24T17:04:12.550515Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.550612Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.550694Z] that was used when compiling the application program: [2018-01-24T17:04:12.550763Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.550832Z] Version included by the application program = 5 [2018-01-24T17:04:12.550845Z] [2018-01-24T17:04:12.550933Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.550974Z] with the CFITSIO library. [2018-01-24T17:04:12.551088Z] ___________________ TransmissionCurveTestCase.testTransform ____________________ [2018-01-24T17:04:12.551180Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.551205Z] [2018-01-24T17:04:12.551310Z] self = [2018-01-24T17:04:12.551323Z] [2018-01-24T17:04:12.551367Z] def testTransform(self): [2018-01-24T17:04:12.551468Z] """Test that we can transform a spatially-varying TransmissionCurve.""" [2018-01-24T17:04:12.551559Z] tc, wavelengths, radii, curve2d = self.makeRadial() [2018-01-24T17:04:12.551575Z] [2018-01-24T17:04:12.551679Z] # If we transform by a pure rotation, what we get back should be equivalent. [2018-01-24T17:04:12.551743Z] affine1 = lsst.afw.geom.AffineTransform( [2018-01-24T17:04:12.551816Z] lsst.afw.geom.LinearTransform.makeRotation( [2018-01-24T17:04:12.551900Z] 2.0*np.pi*self.random.rand()*lsst.afw.geom.radians [2018-01-24T17:04:12.551926Z] ) [2018-01-24T17:04:12.551948Z] ) [2018-01-24T17:04:12.552022Z] transform1 = lsst.afw.geom.makeTransform(affine1) [2018-01-24T17:04:12.552111Z] wl2 = np.linspace(self.minWavelength, self.maxWavelength, 151) [2018-01-24T17:04:12.552169Z] tc1 = tc.transformedBy(transform1) [2018-01-24T17:04:12.552250Z] self.assertTransmissionCurvesEqual(tc, tc1, rtol=1E-13) [2018-01-24T17:04:12.552267Z] [2018-01-24T17:04:12.552341Z] # Test transforming by a random affine transform. [2018-01-24T17:04:12.552419Z] affine2 = lsst.afw.geom.AffineTransform( [2018-01-24T17:04:12.552602Z] lsst.afw.geom.LinearTransform.makeScaling(1.0 + self.random.rand()), [2018-01-24T17:04:12.552729Z] lsst.afw.geom.Extent2D(self.random.randn(), self.random.randn()) [2018-01-24T17:04:12.552770Z] ) [2018-01-24T17:04:12.552870Z] transform2 = lsst.afw.geom.makeTransform(affine2) [2018-01-24T17:04:12.552941Z] tc2 = tc.transformedBy(transform2) [2018-01-24T17:04:12.552998Z] for point in self.points: [2018-01-24T17:04:12.553060Z] self.assertFloatsAlmostEqual( [2018-01-24T17:04:12.553132Z] tc.sampleAt(point, wl2), [2018-01-24T17:04:12.553231Z] tc2.sampleAt(affine2(point), wl2), [2018-01-24T17:04:12.553277Z] rtol=1E-13 [2018-01-24T17:04:12.553314Z] ) [2018-01-24T17:04:12.553348Z] [2018-01-24T17:04:12.553444Z] # Test further transforming the rotated transmission curve [2018-01-24T17:04:12.553516Z] tc3 = tc1.transformedBy(transform2) [2018-01-24T17:04:12.553591Z] self.assertTransmissionCurvesEqual(tc2, tc3) [2018-01-24T17:04:12.553610Z] [2018-01-24T17:04:12.553684Z] # Test persistence for transformed TransmissionCurves [2018-01-24T17:04:12.553732Z] > self.checkPersistence(tc3) [2018-01-24T17:04:12.553744Z] [2018-01-24T17:04:12.553810Z] tests/test_transmissionCurve.py:359: [2018-01-24T17:04:12.553908Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.553920Z] [2018-01-24T17:04:12.554021Z] self = [2018-01-24T17:04:12.554131Z] tc = [2018-01-24T17:04:12.554344Z] points = [Point2D(0.4170220047, 0.7203244934), Point2D(0.0001143748173, 0.3023325726), Point2D(0.1467558908, 0.09233859477), Point2D(0.1862602114, 0.345560727), Point2D(0.3967674742, 0.538816734)] [2018-01-24T17:04:12.554358Z] [2018-01-24T17:04:12.554419Z] def checkPersistence(self, tc, points=None): [2018-01-24T17:04:12.554508Z] """Test that a TransmissionCurve round-trips through persistence.""" [2018-01-24T17:04:12.554547Z] if points is None: [2018-01-24T17:04:12.554607Z] points = self.points [2018-01-24T17:04:12.554707Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.554758Z] tc.writeFits(filename) [2018-01-24T17:04:12.554846Z] > tc2 = lsst.afw.image.TransmissionCurve.readFits(filename) [2018-01-24T17:04:12.554885Z] E FitsError: [2018-01-24T17:04:12.555033Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.555289Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testTransform-2R_p1m.fits' with mode 'r' [2018-01-24T17:04:12.555352Z] E cfitsio error stack: [2018-01-24T17:04:12.555382Z] E {0} [2018-01-24T17:04:12.555634Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testTransform-2R_p1m.fits' with mode 'r' [2018-01-24T17:04:12.555684Z] E cfitsio error stack: [2018-01-24T17:04:12.555711Z] E ' [2018-01-24T17:04:12.555724Z] [2018-01-24T17:04:12.555787Z] tests/test_transmissionCurve.py:124: FitsError [2018-01-24T17:04:12.555889Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.555902Z] [2018-01-24T17:04:12.555995Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.556093Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.556164Z] that was used when compiling the application program: [2018-01-24T17:04:12.556232Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.556300Z] Version included by the application program = 5 [2018-01-24T17:04:12.556313Z] [2018-01-24T17:04:12.556401Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.556441Z] with the CFITSIO library. [2018-01-24T17:04:12.556542Z] ________________________ WarpExposureTestCase.testBBox _________________________ [2018-01-24T17:04:12.556636Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.556649Z] [2018-01-24T17:04:12.556745Z] self = [2018-01-24T17:04:12.556773Z] [2018-01-24T17:04:12.556869Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.556917Z] def testBBox(self): [2018-01-24T17:04:12.557031Z] """Test that the default bounding box includes all warped pixels [2018-01-24T17:04:12.557093Z] """ [2018-01-24T17:04:12.557151Z] kernelName = "lanczos2" [2018-01-24T17:04:12.557218Z] warper = afwMath.Warper(kernelName) [2018-01-24T17:04:12.557311Z] originalExposure, swarpedImage, swarpedWcs = self.getSwarpedImage( [2018-01-24T17:04:12.557402Z] > kernelName=kernelName, useSubregion=True, useDeepCopy=False) [2018-01-24T17:04:12.557415Z] [2018-01-24T17:04:12.557455Z] tests/test_warper.py:82: [2018-01-24T17:04:12.557555Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.557567Z] [2018-01-24T17:04:12.557645Z] self = [2018-01-24T17:04:12.557728Z] kernelName = 'lanczos2', useSubregion = True, useDeepCopy = False [2018-01-24T17:04:12.557741Z] [2018-01-24T17:04:12.557815Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.557916Z] def getSwarpedImage(self, kernelName, useSubregion=False, useDeepCopy=False): [2018-01-24T17:04:12.557940Z] """ [2018-01-24T17:04:12.557973Z] Inputs: [2018-01-24T17:04:12.558071Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.558182Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.558291Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.558390Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.558484Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.558501Z] [2018-01-24T17:04:12.558534Z] Returns: [2018-01-24T17:04:12.558579Z] - originalExposure [2018-01-24T17:04:12.558619Z] - swarpedImage [2018-01-24T17:04:12.558658Z] - swarpedWcs [2018-01-24T17:04:12.558686Z] """ [2018-01-24T17:04:12.558724Z] if useSubregion: [2018-01-24T17:04:12.558832Z] > originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.558870Z] E FitsError: [2018-01-24T17:04:12.559019Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.559217Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.559267Z] E cfitsio error stack: [2018-01-24T17:04:12.559297Z] E {0} [2018-01-24T17:04:12.559522Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.559572Z] E cfitsio error stack: [2018-01-24T17:04:12.559599Z] E ' [2018-01-24T17:04:12.559612Z] [2018-01-24T17:04:12.559663Z] tests/test_warper.py:161: FitsError [2018-01-24T17:04:12.559765Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.559778Z] [2018-01-24T17:04:12.559870Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.559968Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.560040Z] that was used when compiling the application program: [2018-01-24T17:04:12.560108Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.560219Z] Version included by the application program = 5 [2018-01-24T17:04:12.560246Z] [2018-01-24T17:04:12.560335Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.560379Z] with the CFITSIO library. [2018-01-24T17:04:12.560525Z] ______________________ WarpExposureTestCase.testDestBBox _______________________ [2018-01-24T17:04:12.560632Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.560646Z] [2018-01-24T17:04:12.560757Z] self = [2018-01-24T17:04:12.560777Z] [2018-01-24T17:04:12.560868Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.560934Z] def testDestBBox(self): [2018-01-24T17:04:12.561017Z] """Test that the destBBox argument works [2018-01-24T17:04:12.561053Z] """ [2018-01-24T17:04:12.561103Z] kernelName = "lanczos2" [2018-01-24T17:04:12.561165Z] warper = afwMath.Warper(kernelName) [2018-01-24T17:04:12.561275Z] originalExposure, swarpedImage, swarpedWcs = self.getSwarpedImage( [2018-01-24T17:04:12.561380Z] > kernelName=kernelName, useSubregion=True, useDeepCopy=False) [2018-01-24T17:04:12.561399Z] [2018-01-24T17:04:12.561454Z] tests/test_warper.py:130: [2018-01-24T17:04:12.561611Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.561641Z] [2018-01-24T17:04:12.561731Z] self = [2018-01-24T17:04:12.561839Z] kernelName = 'lanczos2', useSubregion = True, useDeepCopy = False [2018-01-24T17:04:12.561855Z] [2018-01-24T17:04:12.561944Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.562045Z] def getSwarpedImage(self, kernelName, useSubregion=False, useDeepCopy=False): [2018-01-24T17:04:12.562070Z] """ [2018-01-24T17:04:12.562102Z] Inputs: [2018-01-24T17:04:12.562202Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.562313Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.562423Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.562522Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.562617Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.562633Z] [2018-01-24T17:04:12.562667Z] Returns: [2018-01-24T17:04:12.562712Z] - originalExposure [2018-01-24T17:04:12.562752Z] - swarpedImage [2018-01-24T17:04:12.562790Z] - swarpedWcs [2018-01-24T17:04:12.562819Z] """ [2018-01-24T17:04:12.562857Z] if useSubregion: [2018-01-24T17:04:12.562951Z] > originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.562988Z] E FitsError: [2018-01-24T17:04:12.563134Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.563339Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.563389Z] E cfitsio error stack: [2018-01-24T17:04:12.563419Z] E {0} [2018-01-24T17:04:12.563645Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.563695Z] E cfitsio error stack: [2018-01-24T17:04:12.563734Z] E ' [2018-01-24T17:04:12.563746Z] [2018-01-24T17:04:12.563796Z] tests/test_warper.py:161: FitsError [2018-01-24T17:04:12.563896Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.563908Z] [2018-01-24T17:04:12.563999Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.564095Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.564165Z] that was used when compiling the application program: [2018-01-24T17:04:12.564231Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.564298Z] Version included by the application program = 5 [2018-01-24T17:04:12.564310Z] [2018-01-24T17:04:12.564396Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.564435Z] with the CFITSIO library. [2018-01-24T17:04:12.564535Z] ____________ WarpExposureTestCase.testMatchSwarpLanczos2SubExposure ____________ [2018-01-24T17:04:12.564627Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.564641Z] [2018-01-24T17:04:12.564759Z] self = [2018-01-24T17:04:12.564772Z] [2018-01-24T17:04:12.564854Z] def testMatchSwarpLanczos2SubExposure(self): [2018-01-24T17:04:12.565011Z] """Test that warpExposure matches swarp using a lanczos2 warping kernel with a subexposure [2018-01-24T17:04:12.565048Z] """ [2018-01-24T17:04:12.565126Z] for useDeepCopy in (False, True): [2018-01-24T17:04:12.565214Z] self.compareToSwarp("lanczos2", useSubregion=True, [2018-01-24T17:04:12.565291Z] > useDeepCopy=useDeepCopy) [2018-01-24T17:04:12.565304Z] [2018-01-24T17:04:12.565356Z] tests/test_warper.py:73: [2018-01-24T17:04:12.565480Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.565561Z] tests/test_warper.py:205: in compareToSwarp [2018-01-24T17:04:12.565669Z] kernelName=kernelName, useSubregion=useSubregion, useDeepCopy=useDeepCopy) [2018-01-24T17:04:12.565775Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.565788Z] [2018-01-24T17:04:12.565927Z] self = [2018-01-24T17:04:12.566054Z] kernelName = 'lanczos2', useSubregion = True, useDeepCopy = False [2018-01-24T17:04:12.566074Z] [2018-01-24T17:04:12.566153Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.566256Z] def getSwarpedImage(self, kernelName, useSubregion=False, useDeepCopy=False): [2018-01-24T17:04:12.566281Z] """ [2018-01-24T17:04:12.566327Z] Inputs: [2018-01-24T17:04:12.566425Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.566536Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.566644Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.566744Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.566837Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.566854Z] [2018-01-24T17:04:12.566890Z] Returns: [2018-01-24T17:04:12.566937Z] - originalExposure [2018-01-24T17:04:12.566979Z] - swarpedImage [2018-01-24T17:04:12.567017Z] - swarpedWcs [2018-01-24T17:04:12.567045Z] """ [2018-01-24T17:04:12.567083Z] if useSubregion: [2018-01-24T17:04:12.567176Z] > originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.567214Z] E FitsError: [2018-01-24T17:04:12.567372Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.567570Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.567620Z] E cfitsio error stack: [2018-01-24T17:04:12.567651Z] E {0} [2018-01-24T17:04:12.567884Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.567958Z] E cfitsio error stack: [2018-01-24T17:04:12.567988Z] E ' [2018-01-24T17:04:12.568000Z] [2018-01-24T17:04:12.568050Z] tests/test_warper.py:161: FitsError [2018-01-24T17:04:12.568149Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.568162Z] [2018-01-24T17:04:12.568252Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.568347Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.568417Z] that was used when compiling the application program: [2018-01-24T17:04:12.568484Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.568550Z] Version included by the application program = 5 [2018-01-24T17:04:12.568562Z] [2018-01-24T17:04:12.568648Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.568687Z] with the CFITSIO library. [2018-01-24T17:04:12.568786Z] ____________________________ WCSTestCaseSDSS.testCD ____________________________ [2018-01-24T17:04:12.568877Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.568889Z] [2018-01-24T17:04:12.568972Z] self = [2018-01-24T17:04:12.568987Z] [2018-01-24T17:04:12.569021Z] def setUp(self): [2018-01-24T17:04:12.569082Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.569185Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.569238Z] E FitsError: [2018-01-24T17:04:12.569421Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.569696Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.569772Z] E cfitsio error stack: [2018-01-24T17:04:12.569809Z] E {0} [2018-01-24T17:04:12.570074Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.570137Z] E cfitsio error stack: [2018-01-24T17:04:12.570166Z] E ' [2018-01-24T17:04:12.570179Z] [2018-01-24T17:04:12.570229Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.570343Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.570355Z] [2018-01-24T17:04:12.570445Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.570541Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.570626Z] that was used when compiling the application program: [2018-01-24T17:04:12.570695Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.570764Z] Version included by the application program = 5 [2018-01-24T17:04:12.570776Z] [2018-01-24T17:04:12.570864Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.570905Z] with the CFITSIO library. [2018-01-24T17:04:12.571007Z] _______________ WarpExposureTestCase.testMatchSwarpLanczos4Image _______________ [2018-01-24T17:04:12.571101Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.571113Z] [2018-01-24T17:04:12.571221Z] self = [2018-01-24T17:04:12.571234Z] [2018-01-24T17:04:12.571293Z] def testMatchSwarpLanczos4Image(self): [2018-01-24T17:04:12.571394Z] """Test that warpExposure matches swarp using a lanczos2 warping kernel [2018-01-24T17:04:12.571424Z] """ [2018-01-24T17:04:12.571505Z] > self.compareToSwarp("lanczos4", useWarpExposure=False) [2018-01-24T17:04:12.571518Z] [2018-01-24T17:04:12.571566Z] tests/test_warpExposure.py:375: [2018-01-24T17:04:12.571667Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.571680Z] [2018-01-24T17:04:12.571801Z] self = [2018-01-24T17:04:12.571902Z] kernelName = 'lanczos4', useWarpExposure = False, useSubregion = False [2018-01-24T17:04:12.571995Z] useDeepCopy = False, interpLength = 10, cacheSize = 100000, rtol = 4e-05 [2018-01-24T17:04:12.572020Z] atol = 0.01 [2018-01-24T17:04:12.572040Z] [2018-01-24T17:04:12.572129Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.572188Z] def compareToSwarp(self, kernelName, [2018-01-24T17:04:12.572293Z] useWarpExposure=True, useSubregion=False, useDeepCopy=False, [2018-01-24T17:04:12.572369Z] interpLength=10, cacheSize=100000, [2018-01-24T17:04:12.572433Z] rtol=4e-05, atol=1e-2): [2018-01-24T17:04:12.572520Z] """Compare warpExposure to swarp for given warping kernel. [2018-01-24T17:04:12.572537Z] [2018-01-24T17:04:12.572639Z] Note that swarp only warps the image plane, so only test that plane. [2018-01-24T17:04:12.572656Z] [2018-01-24T17:04:12.572690Z] Inputs: [2018-01-24T17:04:12.572792Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.572892Z] - useWarpExposure: if True, call warpExposure to warp an ExposureF, [2018-01-24T17:04:12.573007Z] else call warpImage to warp an ImageF and also call the XYTransform version [2018-01-24T17:04:12.573122Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.573249Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.573390Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.573514Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.573647Z] - interpLength: interpLength argument for lsst.afw.math.WarpingControl [2018-01-24T17:04:12.573767Z] - cacheSize: cacheSize argument for lsst.afw.math.WarpingControl; [2018-01-24T17:04:12.573828Z] 0 disables the cache [2018-01-24T17:04:12.573981Z] 10000 gives some speed improvement but less accurate results (atol must be increased) [2018-01-24T17:04:12.574108Z] 100000 gives better accuracy but no speed improvement in this test [2018-01-24T17:04:12.574193Z] - rtol: relative tolerance as used by np.allclose [2018-01-24T17:04:12.574274Z] - atol: absolute tolerance as used by np.allclose [2018-01-24T17:04:12.574303Z] """ [2018-01-24T17:04:12.574369Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.574407Z] kernelName, [2018-01-24T17:04:12.574532Z] "", # there is no point to a separate mask kernel since we aren't testing the mask plane [2018-01-24T17:04:12.574570Z] cacheSize, [2018-01-24T17:04:12.574611Z] interpLength, [2018-01-24T17:04:12.574634Z] ) [2018-01-24T17:04:12.574673Z] if useSubregion: [2018-01-24T17:04:12.574768Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.574892Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.574969Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.575049Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.575117Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.575209Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.575297Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.575324Z] else: [2018-01-24T17:04:12.575415Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.575482Z] E FitsError: [2018-01-24T17:04:12.575634Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.575832Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.575894Z] E cfitsio error stack: [2018-01-24T17:04:12.575924Z] E {0} [2018-01-24T17:04:12.576141Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.576190Z] E cfitsio error stack: [2018-01-24T17:04:12.576216Z] E ' [2018-01-24T17:04:12.576228Z] [2018-01-24T17:04:12.576285Z] tests/test_warpExposure.py:674: FitsError [2018-01-24T17:04:12.576384Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.576396Z] [2018-01-24T17:04:12.576485Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.576580Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.576650Z] that was used when compiling the application program: [2018-01-24T17:04:12.576716Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.576782Z] Version included by the application program = 5 [2018-01-24T17:04:12.576795Z] [2018-01-24T17:04:12.576880Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.576920Z] with the CFITSIO library. [2018-01-24T17:04:12.577018Z] _____________ WarpExposureTestCase.testMatchSwarpLanczos2Exposure ______________ [2018-01-24T17:04:12.577123Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.577151Z] [2018-01-24T17:04:12.577265Z] self = [2018-01-24T17:04:12.577283Z] [2018-01-24T17:04:12.577376Z] def testMatchSwarpLanczos2Exposure(self): [2018-01-24T17:04:12.577500Z] """Test that warpExposure matches swarp using a lanczos2 warping kernel. [2018-01-24T17:04:12.577535Z] """ [2018-01-24T17:04:12.577590Z] > self.compareToSwarp("lanczos2") [2018-01-24T17:04:12.577602Z] [2018-01-24T17:04:12.577641Z] tests/test_warper.py:66: [2018-01-24T17:04:12.577739Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.577798Z] tests/test_warper.py:205: in compareToSwarp [2018-01-24T17:04:12.577894Z] kernelName=kernelName, useSubregion=useSubregion, useDeepCopy=useDeepCopy) [2018-01-24T17:04:12.577993Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.578005Z] [2018-01-24T17:04:12.578107Z] self = [2018-01-24T17:04:12.578190Z] kernelName = 'lanczos2', useSubregion = False, useDeepCopy = False [2018-01-24T17:04:12.578203Z] [2018-01-24T17:04:12.578278Z] @unittest.skipIf(dataDir is None, "afwdata not setup") [2018-01-24T17:04:12.578378Z] def getSwarpedImage(self, kernelName, useSubregion=False, useDeepCopy=False): [2018-01-24T17:04:12.578401Z] """ [2018-01-24T17:04:12.578434Z] Inputs: [2018-01-24T17:04:12.578532Z] - kernelName: name of kernel in the form used by afwImage.makeKernel [2018-01-24T17:04:12.578655Z] - useSubregion: if True then the original source exposure (from which the usual [2018-01-24T17:04:12.578768Z] test exposure was extracted) is read and the correct subregion extracted [2018-01-24T17:04:12.578869Z] - useDeepCopy: if True then the copy of the subimage is a deep copy, [2018-01-24T17:04:12.578965Z] else it is a shallow copy; ignored if useSubregion is False [2018-01-24T17:04:12.578982Z] [2018-01-24T17:04:12.579017Z] Returns: [2018-01-24T17:04:12.579063Z] - originalExposure [2018-01-24T17:04:12.579104Z] - swarpedImage [2018-01-24T17:04:12.579143Z] - swarpedWcs [2018-01-24T17:04:12.579172Z] """ [2018-01-24T17:04:12.579211Z] if useSubregion: [2018-01-24T17:04:12.579309Z] originalFullExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.579434Z] # "medsub" is a subregion of med starting at 0-indexed pixel (40, 150) of size 145 x 200 [2018-01-24T17:04:12.579511Z] bbox = afwGeom.Box2I(afwGeom.Point2I(40, 150), [2018-01-24T17:04:12.579601Z] afwGeom.Extent2I(145, 200)) [2018-01-24T17:04:12.579668Z] originalExposure = afwImage.ExposureF( [2018-01-24T17:04:12.579758Z] originalFullExposure, bbox, afwImage.LOCAL, useDeepCopy) [2018-01-24T17:04:12.579856Z] swarpedImageName = "medsubswarp1%s.fits" % (kernelName,) [2018-01-24T17:04:12.579880Z] else: [2018-01-24T17:04:12.579964Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.579999Z] E FitsError: [2018-01-24T17:04:12.580168Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.580364Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.580426Z] E cfitsio error stack: [2018-01-24T17:04:12.580455Z] E {0} [2018-01-24T17:04:12.580730Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.580809Z] E cfitsio error stack: [2018-01-24T17:04:12.580861Z] E ' [2018-01-24T17:04:12.580882Z] [2018-01-24T17:04:12.580937Z] tests/test_warper.py:169: FitsError [2018-01-24T17:04:12.581040Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.581052Z] [2018-01-24T17:04:12.581146Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.581245Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.581317Z] that was used when compiling the application program: [2018-01-24T17:04:12.581385Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.581454Z] Version included by the application program = 5 [2018-01-24T17:04:12.581467Z] [2018-01-24T17:04:12.581556Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.581597Z] with the CFITSIO library. [2018-01-24T17:04:12.581699Z] ____________________ TransmissionCurveTestCase.testProduct _____________________ [2018-01-24T17:04:12.581793Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.581806Z] [2018-01-24T17:04:12.581908Z] self = [2018-01-24T17:04:12.581920Z] [2018-01-24T17:04:12.581963Z] def testProduct(self): [2018-01-24T17:04:12.582022Z] """Invoke all checkProduct tests. [2018-01-24T17:04:12.582039Z] [2018-01-24T17:04:12.582141Z] Should be updated to use subTest when Python < 3.4 support is ended. [2018-01-24T17:04:12.582170Z] """ [2018-01-24T17:04:12.582234Z] > self.checkProduct(0.0, 0.0, 0.0, 0.0) [2018-01-24T17:04:12.582246Z] [2018-01-24T17:04:12.582300Z] tests/test_transmissionCurve.py:250: [2018-01-24T17:04:12.582402Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.582473Z] tests/test_transmissionCurve.py:243: in checkProduct [2018-01-24T17:04:12.582536Z] self.checkPersistence(product) [2018-01-24T17:04:12.582635Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.582674Z] [2018-01-24T17:04:12.582776Z] self = [2018-01-24T17:04:12.582875Z] tc = [2018-01-24T17:04:12.583101Z] points = [Point2D(0.4170220047, 0.7203244934), Point2D(0.0001143748173, 0.3023325726), Point2D(0.1467558908, 0.09233859477), Point2D(0.1862602114, 0.345560727), Point2D(0.3967674742, 0.538816734)] [2018-01-24T17:04:12.583115Z] [2018-01-24T17:04:12.583181Z] def checkPersistence(self, tc, points=None): [2018-01-24T17:04:12.583276Z] """Test that a TransmissionCurve round-trips through persistence.""" [2018-01-24T17:04:12.583317Z] if points is None: [2018-01-24T17:04:12.583364Z] points = self.points [2018-01-24T17:04:12.583450Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.583500Z] tc.writeFits(filename) [2018-01-24T17:04:12.583602Z] > tc2 = lsst.afw.image.TransmissionCurve.readFits(filename) [2018-01-24T17:04:12.583641Z] E FitsError: [2018-01-24T17:04:12.583791Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.584037Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testProduct-VE0rsp.fits' with mode 'r' [2018-01-24T17:04:12.584104Z] E cfitsio error stack: [2018-01-24T17:04:12.584135Z] E {0} [2018-01-24T17:04:12.584427Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testProduct-VE0rsp.fits' with mode 'r' [2018-01-24T17:04:12.584479Z] E cfitsio error stack: [2018-01-24T17:04:12.584506Z] E ' [2018-01-24T17:04:12.584518Z] [2018-01-24T17:04:12.584581Z] tests/test_transmissionCurve.py:124: FitsError [2018-01-24T17:04:12.584680Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.584692Z] [2018-01-24T17:04:12.584783Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.584888Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.584955Z] that was used when compiling the application program: [2018-01-24T17:04:12.585018Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.585082Z] Version included by the application program = 5 [2018-01-24T17:04:12.585093Z] [2018-01-24T17:04:12.585174Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.585212Z] with the CFITSIO library. [2018-01-24T17:04:12.585322Z] __________ TransmissionCurveTestCase.testSpatiallyConstantEvenSpacing __________ [2018-01-24T17:04:12.585415Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.585428Z] [2018-01-24T17:04:12.585550Z] self = [2018-01-24T17:04:12.585563Z] [2018-01-24T17:04:12.585626Z] def testSpatiallyConstantEvenSpacing(self): [2018-01-24T17:04:12.585700Z] """Invoke all SpatiallyConstantEvenSpacing tests. [2018-01-24T17:04:12.585717Z] [2018-01-24T17:04:12.585816Z] Should be updated to use subTest when Python < 3.4 support is ended. [2018-01-24T17:04:12.585844Z] """ [2018-01-24T17:04:12.585917Z] > self.checkSpatiallyConstantEvenSpacing(0.0, 0.0) [2018-01-24T17:04:12.585930Z] [2018-01-24T17:04:12.585982Z] tests/test_transmissionCurve.py:163: [2018-01-24T17:04:12.586081Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.586173Z] tests/test_transmissionCurve.py:156: in checkSpatiallyConstantEvenSpacing [2018-01-24T17:04:12.586218Z] self.checkPersistence(tc) [2018-01-24T17:04:12.586317Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.586329Z] [2018-01-24T17:04:12.586463Z] self = [2018-01-24T17:04:12.586556Z] tc = [2018-01-24T17:04:12.586771Z] points = [Point2D(0.4170220047, 0.7203244934), Point2D(0.0001143748173, 0.3023325726), Point2D(0.1467558908, 0.09233859477), Point2D(0.1862602114, 0.345560727), Point2D(0.3967674742, 0.538816734)] [2018-01-24T17:04:12.586784Z] [2018-01-24T17:04:12.586845Z] def checkPersistence(self, tc, points=None): [2018-01-24T17:04:12.586951Z] """Test that a TransmissionCurve round-trips through persistence.""" [2018-01-24T17:04:12.586992Z] if points is None: [2018-01-24T17:04:12.587039Z] points = self.points [2018-01-24T17:04:12.587124Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.587175Z] tc.writeFits(filename) [2018-01-24T17:04:12.587273Z] > tc2 = lsst.afw.image.TransmissionCurve.readFits(filename) [2018-01-24T17:04:12.587308Z] E FitsError: [2018-01-24T17:04:12.587498Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.587878Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testSpatiallyConstantEvenSpacing-0AKuh5.fits' with mode 'r' [2018-01-24T17:04:12.587948Z] E cfitsio error stack: [2018-01-24T17:04:12.587982Z] E {0} [2018-01-24T17:04:12.588255Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_transmissionCurve_testSpatiallyConstantEvenSpacing-0AKuh5.fits' with mode 'r' [2018-01-24T17:04:12.588306Z] E cfitsio error stack: [2018-01-24T17:04:12.588334Z] E ' [2018-01-24T17:04:12.588346Z] [2018-01-24T17:04:12.588410Z] tests/test_transmissionCurve.py:124: FitsError [2018-01-24T17:04:12.588511Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.588524Z] [2018-01-24T17:04:12.588617Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.588716Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.588787Z] that was used when compiling the application program: [2018-01-24T17:04:12.588855Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.588923Z] Version included by the application program = 5 [2018-01-24T17:04:12.588936Z] [2018-01-24T17:04:12.589023Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.589064Z] with the CFITSIO library. [2018-01-24T17:04:12.589166Z] __________________________ WCSTestCaseSDSS.testCrpix ___________________________ [2018-01-24T17:04:12.589259Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.589272Z] [2018-01-24T17:04:12.589346Z] self = [2018-01-24T17:04:12.589358Z] [2018-01-24T17:04:12.589393Z] def setUp(self): [2018-01-24T17:04:12.589453Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.589550Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.589588Z] E FitsError: [2018-01-24T17:04:12.589732Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.589926Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.589974Z] E cfitsio error stack: [2018-01-24T17:04:12.590004Z] E {0} [2018-01-24T17:04:12.590250Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.590301Z] E cfitsio error stack: [2018-01-24T17:04:12.590328Z] E ' [2018-01-24T17:04:12.590340Z] [2018-01-24T17:04:12.590388Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.590487Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.590499Z] [2018-01-24T17:04:12.590589Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.590687Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.590758Z] that was used when compiling the application program: [2018-01-24T17:04:12.590824Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.590891Z] Version included by the application program = 5 [2018-01-24T17:04:12.590904Z] [2018-01-24T17:04:12.591006Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.591059Z] with the CFITSIO library. [2018-01-24T17:04:12.591203Z] _____________________ WCSTestCaseSDSS.testAffineTransform ______________________ [2018-01-24T17:04:12.591330Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.591356Z] [2018-01-24T17:04:12.591446Z] self = [2018-01-24T17:04:12.591460Z] [2018-01-24T17:04:12.591496Z] def setUp(self): [2018-01-24T17:04:12.591589Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.591692Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.591742Z] E FitsError: [2018-01-24T17:04:12.591900Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.592099Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.592149Z] E cfitsio error stack: [2018-01-24T17:04:12.592179Z] E {0} [2018-01-24T17:04:12.592406Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.592451Z] E cfitsio error stack: [2018-01-24T17:04:12.592476Z] E ' [2018-01-24T17:04:12.592488Z] [2018-01-24T17:04:12.592533Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.592627Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.592638Z] [2018-01-24T17:04:12.592739Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.592835Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.592905Z] that was used when compiling the application program: [2018-01-24T17:04:12.592971Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.593038Z] Version included by the application program = 5 [2018-01-24T17:04:12.593050Z] [2018-01-24T17:04:12.593144Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.593181Z] with the CFITSIO library. [2018-01-24T17:04:12.593275Z] ______________________ WCSTestCaseSDSS.testCreateCDMatrix ______________________ [2018-01-24T17:04:12.593362Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.593374Z] [2018-01-24T17:04:12.593451Z] self = [2018-01-24T17:04:12.593463Z] [2018-01-24T17:04:12.593509Z] def setUp(self): [2018-01-24T17:04:12.593568Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.593652Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.593689Z] E FitsError: [2018-01-24T17:04:12.593834Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.594032Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.594078Z] E cfitsio error stack: [2018-01-24T17:04:12.594106Z] E {0} [2018-01-24T17:04:12.594330Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.594378Z] E cfitsio error stack: [2018-01-24T17:04:12.594404Z] E ' [2018-01-24T17:04:12.594417Z] [2018-01-24T17:04:12.594464Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.594563Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.594575Z] [2018-01-24T17:04:12.594677Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.594806Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.594898Z] that was used when compiling the application program: [2018-01-24T17:04:12.594986Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.595091Z] Version included by the application program = 5 [2018-01-24T17:04:12.595109Z] [2018-01-24T17:04:12.595216Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.595283Z] with the CFITSIO library. [2018-01-24T17:04:12.595402Z] _________________________ WCSTestCaseSDSS.testIdentity _________________________ [2018-01-24T17:04:12.595513Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.595538Z] [2018-01-24T17:04:12.595616Z] self = [2018-01-24T17:04:12.595629Z] [2018-01-24T17:04:12.595677Z] def setUp(self): [2018-01-24T17:04:12.595736Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.595829Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.595864Z] E FitsError: [2018-01-24T17:04:12.596030Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.596231Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.596281Z] E cfitsio error stack: [2018-01-24T17:04:12.596312Z] E {0} [2018-01-24T17:04:12.596547Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.596595Z] E cfitsio error stack: [2018-01-24T17:04:12.596622Z] E ' [2018-01-24T17:04:12.596634Z] [2018-01-24T17:04:12.596682Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.596795Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.596807Z] [2018-01-24T17:04:12.596900Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.596999Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.597071Z] that was used when compiling the application program: [2018-01-24T17:04:12.597140Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.597220Z] Version included by the application program = 5 [2018-01-24T17:04:12.597244Z] [2018-01-24T17:04:12.597339Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.597391Z] with the CFITSIO library. [2018-01-24T17:04:12.597494Z] ______________________ WarpExposureTestCase.testSmallSrc _______________________ [2018-01-24T17:04:12.597614Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.597631Z] [2018-01-24T17:04:12.597723Z] self = [2018-01-24T17:04:12.597736Z] [2018-01-24T17:04:12.597779Z] def testSmallSrc(self): [2018-01-24T17:04:12.597885Z] """Verify that a source image that is too small will not raise an exception [2018-01-24T17:04:12.597903Z] [2018-01-24T17:04:12.597987Z] This tests another bug that was fixed in ticket #2441 [2018-01-24T17:04:12.598017Z] """ [2018-01-24T17:04:12.598059Z] fromWcs = makeWcs( [2018-01-24T17:04:12.598140Z] pixelScale=afwGeom.Angle(1.0e-8, afwGeom.degrees), [2018-01-24T17:04:12.598186Z] projection="TAN", [2018-01-24T17:04:12.598229Z] crPixPos=(0, 0), [2018-01-24T17:04:12.598289Z] crValCoord=afwCoord.IcrsCoord( [2018-01-24T17:04:12.598366Z] afwGeom.Point2D(359, 0), afwGeom.degrees), [2018-01-24T17:04:12.598389Z] ) [2018-01-24T17:04:12.598484Z] fromExp = afwImage.ExposureF(afwImage.MaskedImageF(1, 1), fromWcs) [2018-01-24T17:04:12.598502Z] [2018-01-24T17:04:12.598541Z] toWcs = makeWcs( [2018-01-24T17:04:12.598661Z] pixelScale=afwGeom.Angle(1.1e-8, afwGeom.degrees), [2018-01-24T17:04:12.598725Z] projection="TAN", [2018-01-24T17:04:12.598787Z] crPixPos=(0, 0), [2018-01-24T17:04:12.598873Z] crValCoord=afwCoord.IcrsCoord( [2018-01-24T17:04:12.598967Z] afwGeom.Point2D(358, 0), afwGeom.degrees), [2018-01-24T17:04:12.598992Z] ) [2018-01-24T17:04:12.599086Z] toExp = afwImage.ExposureF(afwImage.MaskedImageF(10, 10), toWcs) [2018-01-24T17:04:12.599105Z] [2018-01-24T17:04:12.599204Z] warpControl = afwMath.WarpingControl("lanczos3") [2018-01-24T17:04:12.599300Z] # if a bug described in ticket #2441 is present, this will raise an [2018-01-24T17:04:12.599336Z] # exception: [2018-01-24T17:04:12.599426Z] numGoodPix = afwMath.warpExposure(toExp, fromExp, warpControl) [2018-01-24T17:04:12.599482Z] self.assertEqual(numGoodPix, 0) [2018-01-24T17:04:12.599569Z] imArr, maskArr, varArr = toExp.getMaskedImage().getArrays() [2018-01-24T17:04:12.599648Z] self.assertTrue(np.all(np.isnan(imArr))) [2018-01-24T17:04:12.599726Z] self.assertTrue(np.all(np.isinf(varArr))) [2018-01-24T17:04:12.599809Z] > noDataBitMask = afwImage.Mask.getPlaneBitMask("NO_DATA") [2018-01-24T17:04:12.599858Z] E InvalidParameterError: [2018-01-24T17:04:12.600028Z] E File "src/image/Mask.cc", line 682, in static int lsst::afw::image::Mask::getMaskPlane(const std::string &) [MaskPixelT = int] [2018-01-24T17:04:12.600095Z] E Invalid mask plane name: NO_DATA {0} [2018-01-24T17:04:12.600205Z] E lsst::pex::exceptions::InvalidParameterError: 'Invalid mask plane name: NO_DATA' [2018-01-24T17:04:12.600218Z] [2018-01-24T17:04:12.600289Z] tests/test_warpExposure.py:552: InvalidParameterError [2018-01-24T17:04:12.600390Z] _________________ WarpExposureTestCase.testTransformBasedWarp __________________ [2018-01-24T17:04:12.600485Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.600498Z] [2018-01-24T17:04:12.600600Z] self = [2018-01-24T17:04:12.600613Z] [2018-01-24T17:04:12.600693Z] @unittest.skipIf(afwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.600747Z] def testTransformBasedWarp(self): [2018-01-24T17:04:12.600818Z] """Test warping using TransformPoint2ToPoint2 [2018-01-24T17:04:12.600848Z] """ [2018-01-24T17:04:12.600906Z] for interpLength in (0, 1, 2, 4): [2018-01-24T17:04:12.600957Z] kernelName = "lanczos3" [2018-01-24T17:04:12.600995Z] rtol = 4e-5 [2018-01-24T17:04:12.601032Z] atol = 1e-2 [2018-01-24T17:04:12.601105Z] warpingControl = afwMath.WarpingControl( [2018-01-24T17:04:12.601171Z] warpingKernelName = kernelName, [2018-01-24T17:04:12.601233Z] interpLength = interpLength, [2018-01-24T17:04:12.601259Z] ) [2018-01-24T17:04:12.601277Z] [2018-01-24T17:04:12.601368Z] > originalExposure = afwImage.ExposureF(originalExposurePath) [2018-01-24T17:04:12.601406Z] E FitsError: [2018-01-24T17:04:12.601566Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.601757Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.601804Z] E cfitsio error stack: [2018-01-24T17:04:12.601834Z] E {0} [2018-01-24T17:04:12.602051Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/medexp.fits' with mode 'r' [2018-01-24T17:04:12.602114Z] E cfitsio error stack: [2018-01-24T17:04:12.602167Z] E ' [2018-01-24T17:04:12.602186Z] [2018-01-24T17:04:12.602244Z] tests/test_warpExposure.py:449: FitsError [2018-01-24T17:04:12.602381Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.602397Z] [2018-01-24T17:04:12.602499Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.602605Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.602677Z] that was used when compiling the application program: [2018-01-24T17:04:12.602744Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.602812Z] Version included by the application program = 5 [2018-01-24T17:04:12.602824Z] [2018-01-24T17:04:12.602911Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.602951Z] with the CFITSIO library. [2018-01-24T17:04:12.603052Z] ______________________ WCSTestCaseSDSS.testStripKeywords _______________________ [2018-01-24T17:04:12.603148Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.603162Z] [2018-01-24T17:04:12.603243Z] self = [2018-01-24T17:04:12.603255Z] [2018-01-24T17:04:12.603289Z] def setUp(self): [2018-01-24T17:04:12.603348Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.603435Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.603474Z] E FitsError: [2018-01-24T17:04:12.603620Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.603817Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.603866Z] E cfitsio error stack: [2018-01-24T17:04:12.603896Z] E {0} [2018-01-24T17:04:12.604119Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.604168Z] E cfitsio error stack: [2018-01-24T17:04:12.604194Z] E ' [2018-01-24T17:04:12.604206Z] [2018-01-24T17:04:12.604255Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.604355Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.604367Z] [2018-01-24T17:04:12.604458Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.604554Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.604624Z] that was used when compiling the application program: [2018-01-24T17:04:12.604691Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.604785Z] Version included by the application program = 5 [2018-01-24T17:04:12.604801Z] [2018-01-24T17:04:12.604888Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.604928Z] with the CFITSIO library. [2018-01-24T17:04:12.605029Z] ___________________________ WCSTestCaseSDSS.testXY0 ____________________________ [2018-01-24T17:04:12.605122Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.605135Z] [2018-01-24T17:04:12.605205Z] self = [2018-01-24T17:04:12.605218Z] [2018-01-24T17:04:12.605253Z] def setUp(self): [2018-01-24T17:04:12.605312Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.605398Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.605449Z] E FitsError: [2018-01-24T17:04:12.605609Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.605883Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.605954Z] E cfitsio error stack: [2018-01-24T17:04:12.605989Z] E {0} [2018-01-24T17:04:12.606216Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.606267Z] E cfitsio error stack: [2018-01-24T17:04:12.606294Z] E ' [2018-01-24T17:04:12.606306Z] [2018-01-24T17:04:12.606355Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.606456Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.606469Z] [2018-01-24T17:04:12.606561Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.606659Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.606732Z] that was used when compiling the application program: [2018-01-24T17:04:12.606800Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.606868Z] Version included by the application program = 5 [2018-01-24T17:04:12.606881Z] [2018-01-24T17:04:12.606980Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.607019Z] with the CFITSIO library. [2018-01-24T17:04:12.607117Z] ____________________ WCSTestCaseSDSS.testXyToRaDecArguments ____________________ [2018-01-24T17:04:12.607208Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.607221Z] [2018-01-24T17:04:12.607306Z] self = [2018-01-24T17:04:12.607319Z] [2018-01-24T17:04:12.607352Z] def setUp(self): [2018-01-24T17:04:12.607410Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.607495Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.607532Z] E FitsError: [2018-01-24T17:04:12.607676Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.607870Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.607918Z] E cfitsio error stack: [2018-01-24T17:04:12.607948Z] E {0} [2018-01-24T17:04:12.608168Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.608216Z] E cfitsio error stack: [2018-01-24T17:04:12.608243Z] E ' [2018-01-24T17:04:12.608255Z] [2018-01-24T17:04:12.608302Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.608400Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.608412Z] [2018-01-24T17:04:12.608523Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.608632Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.608705Z] that was used when compiling the application program: [2018-01-24T17:04:12.608774Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.608843Z] Version included by the application program = 5 [2018-01-24T17:04:12.608855Z] [2018-01-24T17:04:12.608956Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.608997Z] with the CFITSIO library. [2018-01-24T17:04:12.609109Z] ______________________ WCSTestCaseSDSS.test_RaTan_DecTan _______________________ [2018-01-24T17:04:12.609235Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.609253Z] [2018-01-24T17:04:12.609338Z] self = [2018-01-24T17:04:12.609351Z] [2018-01-24T17:04:12.609387Z] def setUp(self): [2018-01-24T17:04:12.609463Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.609552Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.609591Z] E FitsError: [2018-01-24T17:04:12.609737Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.609934Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.609983Z] E cfitsio error stack: [2018-01-24T17:04:12.610013Z] E {0} [2018-01-24T17:04:12.610237Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.610286Z] E cfitsio error stack: [2018-01-24T17:04:12.610313Z] E ' [2018-01-24T17:04:12.610326Z] [2018-01-24T17:04:12.610374Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.610475Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.610487Z] [2018-01-24T17:04:12.610579Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.610676Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.610746Z] that was used when compiling the application program: [2018-01-24T17:04:12.610814Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.610881Z] Version included by the application program = 5 [2018-01-24T17:04:12.610893Z] [2018-01-24T17:04:12.610980Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.611020Z] with the CFITSIO library. [2018-01-24T17:04:12.612430Z] _____________________ WCSTestCaseCFHT.testAffineTransform ______________________ [2018-01-24T17:04:12.612593Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.612618Z] [2018-01-24T17:04:12.612724Z] self = [2018-01-24T17:04:12.612740Z] [2018-01-24T17:04:12.612776Z] def setUp(self): [2018-01-24T17:04:12.612863Z] if InputImagePath is not None: [2018-01-24T17:04:12.612936Z] path = InputImagePath + ".fits" [2018-01-24T17:04:12.613008Z] > self.metadata = afwImage.readMetadata(path) [2018-01-24T17:04:12.613046Z] E FitsError: [2018-01-24T17:04:12.613190Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.613393Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.613496Z] E cfitsio error stack: [2018-01-24T17:04:12.613532Z] E {0} [2018-01-24T17:04:12.613765Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.613815Z] E cfitsio error stack: [2018-01-24T17:04:12.613843Z] E ' [2018-01-24T17:04:12.613856Z] [2018-01-24T17:04:12.613906Z] tests/test_wcs1.py:513: FitsError [2018-01-24T17:04:12.614007Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.614020Z] [2018-01-24T17:04:12.614113Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.614212Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.614284Z] that was used when compiling the application program: [2018-01-24T17:04:12.614352Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.614421Z] Version included by the application program = 5 [2018-01-24T17:04:12.614433Z] [2018-01-24T17:04:12.614522Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.614562Z] with the CFITSIO library. [2018-01-24T17:04:12.616088Z] ____________________________ WCSTestCaseCFHT.testCD ____________________________ [2018-01-24T17:04:12.616211Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.616240Z] [2018-01-24T17:04:12.616336Z] self = [2018-01-24T17:04:12.616361Z] [2018-01-24T17:04:12.616409Z] def setUp(self): [2018-01-24T17:04:12.616476Z] if InputImagePath is not None: [2018-01-24T17:04:12.616539Z] path = InputImagePath + ".fits" [2018-01-24T17:04:12.616624Z] > self.metadata = afwImage.readMetadata(path) [2018-01-24T17:04:12.616664Z] E FitsError: [2018-01-24T17:04:12.616810Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.617011Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.617060Z] E cfitsio error stack: [2018-01-24T17:04:12.617090Z] E {0} [2018-01-24T17:04:12.617322Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.617368Z] E cfitsio error stack: [2018-01-24T17:04:12.617394Z] E ' [2018-01-24T17:04:12.617405Z] [2018-01-24T17:04:12.617450Z] tests/test_wcs1.py:513: FitsError [2018-01-24T17:04:12.617578Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.617590Z] [2018-01-24T17:04:12.617684Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.617783Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.617869Z] that was used when compiling the application program: [2018-01-24T17:04:12.617936Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.618003Z] Version included by the application program = 5 [2018-01-24T17:04:12.618015Z] [2018-01-24T17:04:12.618102Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.618142Z] with the CFITSIO library. [2018-01-24T17:04:12.619601Z] _________________________ WCSTestCaseCFHT.testCloneWcs _________________________ [2018-01-24T17:04:12.619708Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.619722Z] [2018-01-24T17:04:12.619817Z] self = [2018-01-24T17:04:12.619834Z] [2018-01-24T17:04:12.619879Z] def setUp(self): [2018-01-24T17:04:12.619957Z] if InputImagePath is not None: [2018-01-24T17:04:12.620054Z] path = InputImagePath + ".fits" [2018-01-24T17:04:12.620134Z] > self.metadata = afwImage.readMetadata(path) [2018-01-24T17:04:12.620173Z] E FitsError: [2018-01-24T17:04:12.620323Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.620534Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.620584Z] E cfitsio error stack: [2018-01-24T17:04:12.620615Z] E {0} [2018-01-24T17:04:12.620840Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.620888Z] E cfitsio error stack: [2018-01-24T17:04:12.620915Z] E ' [2018-01-24T17:04:12.620927Z] [2018-01-24T17:04:12.620975Z] tests/test_wcs1.py:513: FitsError [2018-01-24T17:04:12.621086Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.621099Z] [2018-01-24T17:04:12.621192Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.621290Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.621362Z] that was used when compiling the application program: [2018-01-24T17:04:12.621431Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.621499Z] Version included by the application program = 5 [2018-01-24T17:04:12.621512Z] [2018-01-24T17:04:12.621600Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.621641Z] with the CFITSIO library. [2018-01-24T17:04:12.623159Z] _______________________ WCSTestCaseCFHT.testConstructor ________________________ [2018-01-24T17:04:12.623280Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.623303Z] [2018-01-24T17:04:12.623410Z] self = [2018-01-24T17:04:12.623430Z] [2018-01-24T17:04:12.623466Z] def setUp(self): [2018-01-24T17:04:12.623521Z] if InputImagePath is not None: [2018-01-24T17:04:12.623581Z] path = InputImagePath + ".fits" [2018-01-24T17:04:12.623666Z] > self.metadata = afwImage.readMetadata(path) [2018-01-24T17:04:12.623704Z] E FitsError: [2018-01-24T17:04:12.623853Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.624058Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.624109Z] E cfitsio error stack: [2018-01-24T17:04:12.624140Z] E {0} [2018-01-24T17:04:12.624372Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.624422Z] E cfitsio error stack: [2018-01-24T17:04:12.624449Z] E ' [2018-01-24T17:04:12.624462Z] [2018-01-24T17:04:12.624524Z] tests/test_wcs1.py:513: FitsError [2018-01-24T17:04:12.624623Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.624635Z] [2018-01-24T17:04:12.624725Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.624821Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.624891Z] that was used when compiling the application program: [2018-01-24T17:04:12.624958Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.625024Z] Version included by the application program = 5 [2018-01-24T17:04:12.625063Z] [2018-01-24T17:04:12.625152Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.625193Z] with the CFITSIO library. [2018-01-24T17:04:12.626667Z] ________________________ WCSTestCaseCFHT.testPlateScale ________________________ [2018-01-24T17:04:12.626775Z] [gw8] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.626791Z] [2018-01-24T17:04:12.626903Z] self = [2018-01-24T17:04:12.626930Z] [2018-01-24T17:04:12.626974Z] def setUp(self): [2018-01-24T17:04:12.627034Z] if InputImagePath is not None: [2018-01-24T17:04:12.627094Z] path = InputImagePath + ".fits" [2018-01-24T17:04:12.627166Z] > self.metadata = afwImage.readMetadata(path) [2018-01-24T17:04:12.627203Z] E FitsError: [2018-01-24T17:04:12.627348Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.627555Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.627601Z] E cfitsio error stack: [2018-01-24T17:04:12.627630Z] E {0} [2018-01-24T17:04:12.627843Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.627889Z] E cfitsio error stack: [2018-01-24T17:04:12.627927Z] E ' [2018-01-24T17:04:12.627939Z] [2018-01-24T17:04:12.627986Z] tests/test_wcs1.py:513: FitsError [2018-01-24T17:04:12.628085Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.628098Z] [2018-01-24T17:04:12.628188Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.628283Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.628354Z] that was used when compiling the application program: [2018-01-24T17:04:12.628421Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.628488Z] Version included by the application program = 5 [2018-01-24T17:04:12.628501Z] [2018-01-24T17:04:12.628586Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.628625Z] with the CFITSIO library. [2018-01-24T17:04:12.629966Z] _________________________ WCSTestCaseCFHT.testShiftWcs _________________________ [2018-01-24T17:04:12.630127Z] [gw14] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.630155Z] [2018-01-24T17:04:12.630244Z] self = [2018-01-24T17:04:12.630276Z] [2018-01-24T17:04:12.630328Z] def setUp(self): [2018-01-24T17:04:12.630386Z] if InputImagePath is not None: [2018-01-24T17:04:12.630448Z] path = InputImagePath + ".fits" [2018-01-24T17:04:12.630523Z] > self.metadata = afwImage.readMetadata(path) [2018-01-24T17:04:12.630562Z] E FitsError: [2018-01-24T17:04:12.630712Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.630917Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.630967Z] E cfitsio error stack: [2018-01-24T17:04:12.630998Z] E {0} [2018-01-24T17:04:12.631231Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.631282Z] E cfitsio error stack: [2018-01-24T17:04:12.631309Z] E ' [2018-01-24T17:04:12.631322Z] [2018-01-24T17:04:12.631371Z] tests/test_wcs1.py:513: FitsError [2018-01-24T17:04:12.631473Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.631486Z] [2018-01-24T17:04:12.631579Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.631678Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.631750Z] that was used when compiling the application program: [2018-01-24T17:04:12.631819Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.631887Z] Version included by the application program = 5 [2018-01-24T17:04:12.631900Z] [2018-01-24T17:04:12.631989Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.632030Z] with the CFITSIO library. [2018-01-24T17:04:12.633527Z] ______________________ WCSTestCaseCFHT.test_RaTan_DecTan _______________________ [2018-01-24T17:04:12.633652Z] [gw10] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.633679Z] [2018-01-24T17:04:12.633778Z] self = [2018-01-24T17:04:12.633801Z] [2018-01-24T17:04:12.633849Z] def setUp(self): [2018-01-24T17:04:12.633914Z] if InputImagePath is not None: [2018-01-24T17:04:12.633976Z] path = InputImagePath + ".fits" [2018-01-24T17:04:12.634051Z] > self.metadata = afwImage.readMetadata(path) [2018-01-24T17:04:12.634090Z] E FitsError: [2018-01-24T17:04:12.634239Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.634443Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.634507Z] E cfitsio error stack: [2018-01-24T17:04:12.634537Z] E {0} [2018-01-24T17:04:12.634762Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.634811Z] E cfitsio error stack: [2018-01-24T17:04:12.634838Z] E ' [2018-01-24T17:04:12.634850Z] [2018-01-24T17:04:12.634912Z] tests/test_wcs1.py:513: FitsError [2018-01-24T17:04:12.635024Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.635041Z] [2018-01-24T17:04:12.635134Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.635233Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.635305Z] that was used when compiling the application program: [2018-01-24T17:04:12.635385Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.635452Z] Version included by the application program = 5 [2018-01-24T17:04:12.635465Z] [2018-01-24T17:04:12.635551Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.635592Z] with the CFITSIO library. [2018-01-24T17:04:12.637015Z] _________________________ WCSTestCaseCFHT.testReadWcs __________________________ [2018-01-24T17:04:12.637182Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.637212Z] [2018-01-24T17:04:12.637293Z] self = [2018-01-24T17:04:12.637308Z] [2018-01-24T17:04:12.637344Z] def setUp(self): [2018-01-24T17:04:12.637426Z] if InputImagePath is not None: [2018-01-24T17:04:12.637496Z] path = InputImagePath + ".fits" [2018-01-24T17:04:12.637571Z] > self.metadata = afwImage.readMetadata(path) [2018-01-24T17:04:12.637609Z] E FitsError: [2018-01-24T17:04:12.637758Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.637970Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.638045Z] E cfitsio error stack: [2018-01-24T17:04:12.638078Z] E {0} [2018-01-24T17:04:12.638319Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.638369Z] E cfitsio error stack: [2018-01-24T17:04:12.638397Z] E ' [2018-01-24T17:04:12.638410Z] [2018-01-24T17:04:12.638459Z] tests/test_wcs1.py:513: FitsError [2018-01-24T17:04:12.638562Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.638574Z] [2018-01-24T17:04:12.638668Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.638766Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.638838Z] that was used when compiling the application program: [2018-01-24T17:04:12.638906Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.638975Z] Version included by the application program = 5 [2018-01-24T17:04:12.638987Z] [2018-01-24T17:04:12.639076Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.639117Z] with the CFITSIO library. [2018-01-24T17:04:12.640582Z] _____________________ PersistenceTestCase.testLosslessInt ______________________ [2018-01-24T17:04:12.640705Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.640731Z] [2018-01-24T17:04:12.640834Z] self = [2018-01-24T17:04:12.640848Z] [2018-01-24T17:04:12.640896Z] def testLosslessInt(self): [2018-01-24T17:04:12.640981Z] """Test lossless compression of integer image [2018-01-24T17:04:12.641006Z] [2018-01-24T17:04:12.641111Z] We deliberately don't test `lsst.afw.image.ImageL` because [2018-01-24T17:04:12.641227Z] compression of LONGLONG images is unsupported by cfitsio. [2018-01-24T17:04:12.641262Z] """ [2018-01-24T17:04:12.641372Z] classList = (lsst.afw.image.ImageU, lsst.afw.image.ImageI) [2018-01-24T17:04:12.641475Z] algorithmList = ("GZIP", "GZIP_SHUFFLE", "RICE") [2018-01-24T17:04:12.641603Z] for cls, algorithm in itertools.product(classList, algorithmList): [2018-01-24T17:04:12.641763Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm)) [2018-01-24T17:04:12.641826Z] image = self.makeImage(cls) [2018-01-24T17:04:12.641935Z] > self.checkCompressedImage(cls, image, compression, atol=0.0) [2018-01-24T17:04:12.641958Z] [2018-01-24T17:04:12.642024Z] tests/test_fitsCompression.py:525: [2018-01-24T17:04:12.642155Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.642257Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.642369Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.642443Z] tests/test_fitsCompression.py:816: in readWriteImage [2018-01-24T17:04:12.642536Z] return persistUnpersist(ImageClass, image, filename, additionalData) [2018-01-24T17:04:12.642638Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.642651Z] [2018-01-24T17:04:12.642727Z] ImageClass = [2018-01-24T17:04:12.642813Z] image = [2018-01-24T17:04:12.642983Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessInt-UXXBAZ.PersistenceTestCase.fits' [2018-01-24T17:04:12.643124Z] additionalData = [2018-01-24T17:04:12.643138Z] [2018-01-24T17:04:12.643242Z] def persistUnpersist(ImageClass, image, filename, additionalData): [2018-01-24T17:04:12.643338Z] """Use the persistence framework to persist and unpersist an image [2018-01-24T17:04:12.643355Z] [2018-01-24T17:04:12.643400Z] Parameters [2018-01-24T17:04:12.643432Z] ---------- [2018-01-24T17:04:12.643519Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.643558Z] Class of image. [2018-01-24T17:04:12.643641Z] image : `lsst.afw.image.Image` or `lsst.afw.image.MaskedImage` [2018-01-24T17:04:12.643684Z] Image to compress. [2018-01-24T17:04:12.643720Z] filename : `str` [2018-01-24T17:04:12.643762Z] Filename to write. [2018-01-24T17:04:12.643828Z] additionalData : `lsst.daf.base.PropertySet` [2018-01-24T17:04:12.643911Z] Additionl data for persistence framework. [2018-01-24T17:04:12.643928Z] [2018-01-24T17:04:12.643969Z] Returns [2018-01-24T17:04:12.643999Z] ------- [2018-01-24T17:04:12.644049Z] unpersisted : `ImageClass` [2018-01-24T17:04:12.644100Z] The unpersisted image. [2018-01-24T17:04:12.644125Z] """ [2018-01-24T17:04:12.644184Z] additionalData.set("visit", 12345) [2018-01-24T17:04:12.644238Z] additionalData.set("ccd", 67) [2018-01-24T17:04:12.644254Z] [2018-01-24T17:04:12.644384Z] persistence = lsst.daf.persistence.Persistence.getPersistence(lsst.pex.policy.Policy()) [2018-01-24T17:04:12.644475Z] logicalLocation = lsst.daf.persistence.LogicalLocation(filename) [2018-01-24T17:04:12.644574Z] storage = persistence.getRetrieveStorage("FitsStorage", logicalLocation) [2018-01-24T17:04:12.644657Z] storageList = lsst.daf.persistence.StorageList([storage]) [2018-01-24T17:04:12.644673Z] [2018-01-24T17:04:12.644754Z] persistence.persist(image, storageList, additionalData) [2018-01-24T17:04:12.644770Z] [2018-01-24T17:04:12.644805Z] classMenu = { [2018-01-24T17:04:12.644866Z] lsst.afw.image.ImageU: "ImageU", [2018-01-24T17:04:12.644926Z] lsst.afw.image.ImageI: "ImageI", [2018-01-24T17:04:12.644986Z] lsst.afw.image.ImageL: "ImageL", [2018-01-24T17:04:12.645045Z] lsst.afw.image.ImageF: "ImageF", [2018-01-24T17:04:12.645105Z] lsst.afw.image.ImageD: "ImageD", [2018-01-24T17:04:12.645160Z] lsst.afw.image.Mask: "Mask", [2018-01-24T17:04:12.645233Z] lsst.afw.image.MaskedImageF: "MaskedImageF", [2018-01-24T17:04:12.645260Z] } [2018-01-24T17:04:12.645405Z] > return persistence.unsafeRetrieve(classMenu[ImageClass], storageList, lsst.daf.base.PropertySet()) [2018-01-24T17:04:12.645452Z] E FitsError: [2018-01-24T17:04:12.645620Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.645881Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessInt-UXXBAZ.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.645941Z] E cfitsio error stack: [2018-01-24T17:04:12.645985Z] E {0} [2018-01-24T17:04:12.646293Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLosslessInt-UXXBAZ.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.646350Z] E cfitsio error stack: [2018-01-24T17:04:12.646386Z] E ' [2018-01-24T17:04:12.646398Z] [2018-01-24T17:04:12.646494Z] tests/test_fitsCompression.py:785: FitsError [2018-01-24T17:04:12.646607Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.646621Z] [2018-01-24T17:04:12.646712Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.646808Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.646892Z] that was used when compiling the application program: [2018-01-24T17:04:12.646961Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.647057Z] Version included by the application program = 5 [2018-01-24T17:04:12.647074Z] [2018-01-24T17:04:12.647163Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.647204Z] with the CFITSIO library. [2018-01-24T17:04:12.647316Z] _________________________ WcsTestCase.testIcrsEquinox __________________________ [2018-01-24T17:04:12.647421Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.647434Z] [2018-01-24T17:04:12.647510Z] self = [2018-01-24T17:04:12.647523Z] [2018-01-24T17:04:12.647570Z] def testIcrsEquinox(self): [2018-01-24T17:04:12.647667Z] """Check that EQUINOX is not written to FITS for ICRS coordinates""" [2018-01-24T17:04:12.647746Z] def checkEquinoxHeader(coordSysName, writeEquinox): [2018-01-24T17:04:12.647819Z] coordSys = getattr(afwCoord, coordSysName) [2018-01-24T17:04:12.647931Z] # We should get the same behaviour with both Wcs and TanWcs: check [2018-01-24T17:04:12.647969Z] # them both. [2018-01-24T17:04:12.648075Z] for dummyWcs in (makeWcs(coordSys=coordSys, projection="SIN"), [2018-01-24T17:04:12.648172Z] makeWcs(coordSys=coordSys, projection="TAN")): [2018-01-24T17:04:12.648256Z] dummyExposure = afwImage.ExposureF() [2018-01-24T17:04:12.648318Z] dummyExposure.setWcs(dummyWcs) [2018-01-24T17:04:12.648424Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.648495Z] dummyExposure.writeFits(tmpFile) [2018-01-24T17:04:12.648576Z] metadata = afwImage.readMetadata(tmpFile) [2018-01-24T17:04:12.648672Z] self.assertEqual(metadata.get("RADESYS"), coordSysName) [2018-01-24T17:04:12.648725Z] self.assertTrue( [2018-01-24T17:04:12.648819Z] ("EQUINOX" in metadata.names()) == writeEquinox) [2018-01-24T17:04:12.648877Z] > checkEquinoxHeader("ICRS", False) [2018-01-24T17:04:12.648891Z] [2018-01-24T17:04:12.648930Z] tests/test_wcs1.py:265: [2018-01-24T17:04:12.649043Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.649055Z] [2018-01-24T17:04:12.649114Z] coordSysName = 'ICRS', writeEquinox = False [2018-01-24T17:04:12.649126Z] [2018-01-24T17:04:12.649198Z] def checkEquinoxHeader(coordSysName, writeEquinox): [2018-01-24T17:04:12.649264Z] coordSys = getattr(afwCoord, coordSysName) [2018-01-24T17:04:12.649357Z] # We should get the same behaviour with both Wcs and TanWcs: check [2018-01-24T17:04:12.649391Z] # them both. [2018-01-24T17:04:12.649479Z] for dummyWcs in (makeWcs(coordSys=coordSys, projection="SIN"), [2018-01-24T17:04:12.649587Z] makeWcs(coordSys=coordSys, projection="TAN")): [2018-01-24T17:04:12.649668Z] dummyExposure = afwImage.ExposureF() [2018-01-24T17:04:12.649748Z] dummyExposure.setWcs(dummyWcs) [2018-01-24T17:04:12.649863Z] with lsst.utils.tests.getTempFilePath(".fits") as tmpFile: [2018-01-24T17:04:12.649953Z] dummyExposure.writeFits(tmpFile) [2018-01-24T17:04:12.650050Z] > metadata = afwImage.readMetadata(tmpFile) [2018-01-24T17:04:12.650097Z] E FitsError: [2018-01-24T17:04:12.650261Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.650480Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcs1_testIcrsEquinox-qwdsH5.fits' with mode 'r' [2018-01-24T17:04:12.650534Z] E cfitsio error stack: [2018-01-24T17:04:12.650569Z] E {0} [2018-01-24T17:04:12.650809Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcs1_testIcrsEquinox-qwdsH5.fits' with mode 'r' [2018-01-24T17:04:12.650863Z] E cfitsio error stack: [2018-01-24T17:04:12.650894Z] E ' [2018-01-24T17:04:12.650906Z] [2018-01-24T17:04:12.650967Z] tests/test_wcs1.py:261: FitsError [2018-01-24T17:04:12.651069Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.651082Z] [2018-01-24T17:04:12.651174Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.651285Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.651355Z] that was used when compiling the application program: [2018-01-24T17:04:12.651422Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.651489Z] Version included by the application program = 5 [2018-01-24T17:04:12.651502Z] [2018-01-24T17:04:12.651587Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.651627Z] with the CFITSIO library. [2018-01-24T17:04:12.651726Z] ________________ WcsFitsTableTestCase.testWcsWhenNonPersistable ________________ [2018-01-24T17:04:12.651818Z] [gw15] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.651830Z] [2018-01-24T17:04:12.651933Z] self = [2018-01-24T17:04:12.651946Z] [2018-01-24T17:04:12.652001Z] def testWcsWhenNonPersistable(self): [2018-01-24T17:04:12.652099Z] """Test that we can round-trip a WCS even when it is not persistable""" [2018-01-24T17:04:12.652130Z] import os [2018-01-24T17:04:12.652146Z] [2018-01-24T17:04:12.652257Z] fileName = os.path.join(os.path.split(__file__)[0], "data", "ZPN.fits") [2018-01-24T17:04:12.652324Z] > exp = lsst.afw.image.ExposureF(fileName) [2018-01-24T17:04:12.652358Z] E FitsError: [2018-01-24T17:04:12.652503Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.652676Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ZPN.fits' with mode 'r' [2018-01-24T17:04:12.652721Z] E cfitsio error stack: [2018-01-24T17:04:12.652747Z] E {0} [2018-01-24T17:04:12.652948Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ZPN.fits' with mode 'r' [2018-01-24T17:04:12.652993Z] E cfitsio error stack: [2018-01-24T17:04:12.653016Z] E ' [2018-01-24T17:04:12.653028Z] [2018-01-24T17:04:12.653087Z] tests/test_wcsFitsTable.py:185: FitsError [2018-01-24T17:04:12.653188Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.653201Z] [2018-01-24T17:04:12.653295Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.653425Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.653556Z] that was used when compiling the application program: [2018-01-24T17:04:12.653653Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.653733Z] Version included by the application program = 5 [2018-01-24T17:04:12.653747Z] [2018-01-24T17:04:12.653837Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.653879Z] with the CFITSIO library. [2018-01-24T17:04:12.653981Z] _______________________ WCSTestCaseSDSS.testInvalidRaDec _______________________ [2018-01-24T17:04:12.654075Z] [gw9] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.654088Z] [2018-01-24T17:04:12.654188Z] self = [2018-01-24T17:04:12.654202Z] [2018-01-24T17:04:12.654237Z] def setUp(self): [2018-01-24T17:04:12.654297Z] if InputSmallImagePath is not None: [2018-01-24T17:04:12.654468Z] > self.im = afwImage.DecoratedImageD(InputSmallImagePath) [2018-01-24T17:04:12.654517Z] E FitsError: [2018-01-24T17:04:12.654670Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.654874Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.654925Z] E cfitsio error stack: [2018-01-24T17:04:12.654957Z] E {0} [2018-01-24T17:04:12.655188Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_img.fits' with mode 'r' [2018-01-24T17:04:12.655238Z] E cfitsio error stack: [2018-01-24T17:04:12.655265Z] E ' [2018-01-24T17:04:12.655279Z] [2018-01-24T17:04:12.655329Z] tests/test_wcs1.py:316: FitsError [2018-01-24T17:04:12.655432Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.655445Z] [2018-01-24T17:04:12.655539Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.655638Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.655711Z] that was used when compiling the application program: [2018-01-24T17:04:12.655780Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.655850Z] Version included by the application program = 5 [2018-01-24T17:04:12.655863Z] [2018-01-24T17:04:12.655952Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.655993Z] with the CFITSIO library. [2018-01-24T17:04:12.656925Z] ______________________ WcsFitsTableTestCase.testSimpleWcs ______________________ [2018-01-24T17:04:12.657040Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.657065Z] [2018-01-24T17:04:12.657167Z] self = [2018-01-24T17:04:12.657186Z] [2018-01-24T17:04:12.657244Z] def testSimpleWcs(self): [2018-01-24T17:04:12.657356Z] with lsst.utils.tests.getTempFilePath(".fits") as fileName: [2018-01-24T17:04:12.657456Z] wcsIn = lsst.afw.image.makeWcs(self.metadata) [2018-01-24T17:04:12.657535Z] > wcsOut = self.doFitsRoundTrip(fileName, wcsIn) [2018-01-24T17:04:12.657549Z] [2018-01-24T17:04:12.657596Z] tests/test_wcsFitsTable.py:75: [2018-01-24T17:04:12.657711Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.657737Z] [2018-01-24T17:04:12.657832Z] self = [2018-01-24T17:04:12.657956Z] fileName = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testSimpleWcs-OnAP0g.fits' [2018-01-24T17:04:12.658036Z] wcsIn = [2018-01-24T17:04:12.658050Z] [2018-01-24T17:04:12.658115Z] def doFitsRoundTrip(self, fileName, wcsIn): [2018-01-24T17:04:12.658165Z] wcsIn.writeFits(fileName) [2018-01-24T17:04:12.658239Z] > wcsOut = lsst.afw.image.Wcs.readFits(fileName) [2018-01-24T17:04:12.658285Z] E FitsError: [2018-01-24T17:04:12.658426Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.658636Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testSimpleWcs-OnAP0g.fits' with mode 'r' [2018-01-24T17:04:12.658681Z] E cfitsio error stack: [2018-01-24T17:04:12.658707Z] E {0} [2018-01-24T17:04:12.658966Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testSimpleWcs-OnAP0g.fits' with mode 'r' [2018-01-24T17:04:12.659011Z] E cfitsio error stack: [2018-01-24T17:04:12.659034Z] E ' [2018-01-24T17:04:12.659046Z] [2018-01-24T17:04:12.659102Z] tests/test_wcsFitsTable.py:69: FitsError [2018-01-24T17:04:12.659201Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.659214Z] [2018-01-24T17:04:12.659304Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.659400Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.659470Z] that was used when compiling the application program: [2018-01-24T17:04:12.659536Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.659603Z] Version included by the application program = 5 [2018-01-24T17:04:12.659616Z] [2018-01-24T17:04:12.659702Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.659742Z] with the CFITSIO library. [2018-01-24T17:04:12.660879Z] _________________ WcsFitsTableTestCase.testSkyOriginPrecision __________________ [2018-01-24T17:04:12.661001Z] [gw12] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.661026Z] [2018-01-24T17:04:12.661206Z] self = [2018-01-24T17:04:12.661229Z] [2018-01-24T17:04:12.661310Z] def testSkyOriginPrecision(self): [2018-01-24T17:04:12.661417Z] """Test that we don't lose precision in CRVAL when round-tripping [2018-01-24T17:04:12.661540Z] (DM-10105), using a WCS in which we previously did. [2018-01-24T17:04:12.661584Z] """ [2018-01-24T17:04:12.661659Z] metadata = lsst.daf.base.PropertyList() [2018-01-24T17:04:12.661734Z] metadata.add('CD1_1', -4.66666666666667e-05) [2018-01-24T17:04:12.661784Z] metadata.add('CD1_2', 0.0) [2018-01-24T17:04:12.661834Z] metadata.add('CD2_1', 0.0) [2018-01-24T17:04:12.661901Z] metadata.add('CD2_2', 4.66666666666667e-05) [2018-01-24T17:04:12.661956Z] metadata.add('CRPIX1', 18000.0) [2018-01-24T17:04:12.662029Z] metadata.add('CRPIX2', 18000.0) [2018-01-24T17:04:12.662082Z] metadata.add('CRVAL1', 247.5) [2018-01-24T17:04:12.662148Z] metadata.add('CRVAL2', -87.0247933884297) [2018-01-24T17:04:12.662215Z] metadata.add('CTYPE1', 'RA---TAN') [2018-01-24T17:04:12.662274Z] metadata.add('CTYPE2', 'DEC--TAN') [2018-01-24T17:04:12.662326Z] metadata.add('CUNIT1', 'deg') [2018-01-24T17:04:12.662378Z] metadata.add('CUNIT2', 'deg') [2018-01-24T17:04:12.662425Z] metadata.add('NAXIS', 2) [2018-01-24T17:04:12.662479Z] metadata.add('RADESYS', 'ICRS') [2018-01-24T17:04:12.662542Z] wcs1 = lsst.afw.image.makeWcs(metadata) [2018-01-24T17:04:12.662627Z] with lsst.utils.tests.getTempFilePath(".fits") as fileName: [2018-01-24T17:04:12.662678Z] wcs1.writeFits(fileName) [2018-01-24T17:04:12.662751Z] > wcs2 = lsst.afw.image.Wcs.readFits(fileName) [2018-01-24T17:04:12.662789Z] E FitsError: [2018-01-24T17:04:12.662934Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.663175Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testSkyOriginPrecision-Phvgse.fits' with mode 'r' [2018-01-24T17:04:12.663225Z] E cfitsio error stack: [2018-01-24T17:04:12.663255Z] E {0} [2018-01-24T17:04:12.663516Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testSkyOriginPrecision-Phvgse.fits' with mode 'r' [2018-01-24T17:04:12.663571Z] E cfitsio error stack: [2018-01-24T17:04:12.663599Z] E ' [2018-01-24T17:04:12.663632Z] [2018-01-24T17:04:12.663691Z] tests/test_wcsFitsTable.py:218: FitsError [2018-01-24T17:04:12.663820Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.663837Z] [2018-01-24T17:04:12.663929Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.664038Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.664108Z] that was used when compiling the application program: [2018-01-24T17:04:12.664214Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.664284Z] Version included by the application program = 5 [2018-01-24T17:04:12.664297Z] [2018-01-24T17:04:12.664395Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.664437Z] with the CFITSIO library. [2018-01-24T17:04:12.664784Z] __________________ PersistenceTestCase.testLossyFloatCfitsio ___________________ [2018-01-24T17:04:12.664904Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.664931Z] [2018-01-24T17:04:12.665059Z] self = [2018-01-24T17:04:12.665083Z] [2018-01-24T17:04:12.665147Z] def testLossyFloatCfitsio(self): [2018-01-24T17:04:12.665269Z] """Test lossy compresion of floating-point images with cfitsio [2018-01-24T17:04:12.665292Z] [2018-01-24T17:04:12.665396Z] cfitsio does the compression, controlled through the 'quantizeLevel' [2018-01-24T17:04:12.665498Z] parameter. Note that cfitsio doesn't have access to our masks when [2018-01-24T17:04:12.665579Z] it does its statistics. [2018-01-24T17:04:12.665632Z] """ [2018-01-24T17:04:12.665741Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.665825Z] algorithmList = ("GZIP", "GZIP_SHUFFLE", "RICE") [2018-01-24T17:04:12.665877Z] quantizeList = (4.0, 10.0) [2018-01-24T17:04:12.666009Z] for cls, algorithm, quantizeLevel in itertools.product(classList, algorithmList, quantizeList): [2018-01-24T17:04:12.666145Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm), [2018-01-24T17:04:12.666249Z] quantizeLevel=quantizeLevel) [2018-01-24T17:04:12.666329Z] image = self.makeImage(cls) [2018-01-24T17:04:12.666496Z] > self.checkCompressedImage(cls, image, compression, atol=self.noise/quantizeLevel) [2018-01-24T17:04:12.666522Z] [2018-01-24T17:04:12.666576Z] tests/test_fitsCompression.py:570: [2018-01-24T17:04:12.666696Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.666781Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.666875Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.666945Z] tests/test_fitsCompression.py:816: in readWriteImage [2018-01-24T17:04:12.667036Z] return persistUnpersist(ImageClass, image, filename, additionalData) [2018-01-24T17:04:12.667135Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.667147Z] [2018-01-24T17:04:12.667219Z] ImageClass = [2018-01-24T17:04:12.667302Z] image = [2018-01-24T17:04:12.667481Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatCfitsio-HXuGz6.PersistenceTestCase.fits' [2018-01-24T17:04:12.667621Z] additionalData = [2018-01-24T17:04:12.667636Z] [2018-01-24T17:04:12.667726Z] def persistUnpersist(ImageClass, image, filename, additionalData): [2018-01-24T17:04:12.667841Z] """Use the persistence framework to persist and unpersist an image [2018-01-24T17:04:12.667859Z] [2018-01-24T17:04:12.667891Z] Parameters [2018-01-24T17:04:12.667923Z] ---------- [2018-01-24T17:04:12.668000Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.668061Z] Class of image. [2018-01-24T17:04:12.668152Z] image : `lsst.afw.image.Image` or `lsst.afw.image.MaskedImage` [2018-01-24T17:04:12.668199Z] Image to compress. [2018-01-24T17:04:12.668238Z] filename : `str` [2018-01-24T17:04:12.668284Z] Filename to write. [2018-01-24T17:04:12.668366Z] additionalData : `lsst.daf.base.PropertySet` [2018-01-24T17:04:12.668436Z] Additionl data for persistence framework. [2018-01-24T17:04:12.668453Z] [2018-01-24T17:04:12.668481Z] Returns [2018-01-24T17:04:12.668510Z] ------- [2018-01-24T17:04:12.668559Z] unpersisted : `ImageClass` [2018-01-24T17:04:12.668608Z] The unpersisted image. [2018-01-24T17:04:12.668653Z] """ [2018-01-24T17:04:12.668734Z] additionalData.set("visit", 12345) [2018-01-24T17:04:12.668789Z] additionalData.set("ccd", 67) [2018-01-24T17:04:12.668806Z] [2018-01-24T17:04:12.668934Z] persistence = lsst.daf.persistence.Persistence.getPersistence(lsst.pex.policy.Policy()) [2018-01-24T17:04:12.669028Z] logicalLocation = lsst.daf.persistence.LogicalLocation(filename) [2018-01-24T17:04:12.669228Z] storage = persistence.getRetrieveStorage("FitsStorage", logicalLocation) [2018-01-24T17:04:12.669323Z] storageList = lsst.daf.persistence.StorageList([storage]) [2018-01-24T17:04:12.669341Z] [2018-01-24T17:04:12.669424Z] persistence.persist(image, storageList, additionalData) [2018-01-24T17:04:12.669442Z] [2018-01-24T17:04:12.669478Z] classMenu = { [2018-01-24T17:04:12.669541Z] lsst.afw.image.ImageU: "ImageU", [2018-01-24T17:04:12.669603Z] lsst.afw.image.ImageI: "ImageI", [2018-01-24T17:04:12.669664Z] lsst.afw.image.ImageL: "ImageL", [2018-01-24T17:04:12.669748Z] lsst.afw.image.ImageF: "ImageF", [2018-01-24T17:04:12.669812Z] lsst.afw.image.ImageD: "ImageD", [2018-01-24T17:04:12.669871Z] lsst.afw.image.Mask: "Mask", [2018-01-24T17:04:12.669971Z] lsst.afw.image.MaskedImageF: "MaskedImageF", [2018-01-24T17:04:12.670022Z] } [2018-01-24T17:04:12.670162Z] > return persistence.unsafeRetrieve(classMenu[ImageClass], storageList, lsst.daf.base.PropertySet()) [2018-01-24T17:04:12.670211Z] E FitsError: [2018-01-24T17:04:12.670453Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.670794Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatCfitsio-HXuGz6.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.670851Z] E cfitsio error stack: [2018-01-24T17:04:12.670879Z] E {0} [2018-01-24T17:04:12.671160Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatCfitsio-HXuGz6.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.671211Z] E cfitsio error stack: [2018-01-24T17:04:12.671235Z] E ' [2018-01-24T17:04:12.671248Z] [2018-01-24T17:04:12.671311Z] tests/test_fitsCompression.py:785: FitsError [2018-01-24T17:04:12.671413Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.671426Z] [2018-01-24T17:04:12.671519Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.671618Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.671690Z] that was used when compiling the application program: [2018-01-24T17:04:12.671759Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.671827Z] Version included by the application program = 5 [2018-01-24T17:04:12.671840Z] [2018-01-24T17:04:12.671928Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.672000Z] with the CFITSIO library. [2018-01-24T17:04:12.672106Z] _______________________ WcsFitsTableTestCase.testTanWcs ________________________ [2018-01-24T17:04:12.672201Z] [gw1] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.672214Z] [2018-01-24T17:04:12.672304Z] self = [2018-01-24T17:04:12.672318Z] [2018-01-24T17:04:12.672358Z] def testTanWcs(self): [2018-01-24T17:04:12.672403Z] self.addSipMetadata() [2018-01-24T17:04:12.672477Z] wcsIn = lsst.afw.image.makeWcs(self.metadata) [2018-01-24T17:04:12.672567Z] with lsst.utils.tests.getTempFilePath(".fits") as fileName: [2018-01-24T17:04:12.672645Z] > wcsOut = self.doFitsRoundTrip(fileName, wcsIn) [2018-01-24T17:04:12.672658Z] [2018-01-24T17:04:12.672706Z] tests/test_wcsFitsTable.py:149: [2018-01-24T17:04:12.672814Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.672827Z] [2018-01-24T17:04:12.672917Z] self = [2018-01-24T17:04:12.673036Z] fileName = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testTanWcs-g3UV6d.fits' [2018-01-24T17:04:12.673117Z] wcsIn = [2018-01-24T17:04:12.673130Z] [2018-01-24T17:04:12.673195Z] def doFitsRoundTrip(self, fileName, wcsIn): [2018-01-24T17:04:12.673245Z] wcsIn.writeFits(fileName) [2018-01-24T17:04:12.673323Z] > wcsOut = lsst.afw.image.Wcs.readFits(fileName) [2018-01-24T17:04:12.673358Z] E FitsError: [2018-01-24T17:04:12.673502Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.673715Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testTanWcs-g3UV6d.fits' with mode 'r' [2018-01-24T17:04:12.673760Z] E cfitsio error stack: [2018-01-24T17:04:12.673787Z] E {0} [2018-01-24T17:04:12.674063Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testTanWcs-g3UV6d.fits' with mode 'r' [2018-01-24T17:04:12.674138Z] E cfitsio error stack: [2018-01-24T17:04:12.674177Z] E ' [2018-01-24T17:04:12.674192Z] [2018-01-24T17:04:12.674252Z] tests/test_wcsFitsTable.py:69: FitsError [2018-01-24T17:04:12.674369Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.674391Z] [2018-01-24T17:04:12.674516Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.674637Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.674717Z] that was used when compiling the application program: [2018-01-24T17:04:12.674786Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.674855Z] Version included by the application program = 5 [2018-01-24T17:04:12.674868Z] [2018-01-24T17:04:12.674956Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.674997Z] with the CFITSIO library. [2018-01-24T17:04:12.675100Z] ______________________ WcsFitsTableTestCase.testExposure _______________________ [2018-01-24T17:04:12.675194Z] [gw0] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.675207Z] [2018-01-24T17:04:12.675299Z] self = [2018-01-24T17:04:12.675311Z] [2018-01-24T17:04:12.675354Z] def testExposure(self): [2018-01-24T17:04:12.675473Z] """Test that we load the Wcs from the binary table instead of headers when possible.""" [2018-01-24T17:04:12.675518Z] self.addSipMetadata() [2018-01-24T17:04:12.675590Z] wcsIn = lsst.afw.image.makeWcs(self.metadata) [2018-01-24T17:04:12.675651Z] dim = lsst.afw.geom.Extent2I(20, 30) [2018-01-24T17:04:12.675714Z] expIn = lsst.afw.image.ExposureF(dim) [2018-01-24T17:04:12.675757Z] expIn.setWcs(wcsIn) [2018-01-24T17:04:12.675845Z] with lsst.utils.tests.getTempFilePath(".fits") as fileName: [2018-01-24T17:04:12.675899Z] expIn.writeFits(fileName) [2018-01-24T17:04:12.676017Z] # Manually mess up the headers, so we'd know if we were loading the Wcs from that; [2018-01-24T17:04:12.676135Z] # when there is a WCS in the header and a WCS in the FITS table, we should use the [2018-01-24T17:04:12.676228Z] # latter, because the former might just be an approximation. [2018-01-24T17:04:12.676296Z] fits = astropy.io.fits.open(fileName) [2018-01-24T17:04:12.676357Z] fits[1].header.remove("CTYPE1") [2018-01-24T17:04:12.676418Z] fits[1].header.remove("CTYPE2") [2018-01-24T17:04:12.676498Z] fits.writeto(fileName, overwrite=True) [2018-01-24T17:04:12.676536Z] fits.close() [2018-01-24T17:04:12.676586Z] # now load it using afw [2018-01-24T17:04:12.676671Z] > expOut = lsst.afw.image.ExposureF(fileName) [2018-01-24T17:04:12.676709Z] E FitsError: [2018-01-24T17:04:12.676858Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.677077Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testExposure-5G24Mt.fits' with mode 'r' [2018-01-24T17:04:12.677128Z] E cfitsio error stack: [2018-01-24T17:04:12.677158Z] E {0} [2018-01-24T17:04:12.677405Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_wcsFitsTable_testExposure-5G24Mt.fits' with mode 'r' [2018-01-24T17:04:12.677455Z] E cfitsio error stack: [2018-01-24T17:04:12.677483Z] E ' [2018-01-24T17:04:12.677495Z] [2018-01-24T17:04:12.677553Z] tests/test_wcsFitsTable.py:176: FitsError [2018-01-24T17:04:12.677667Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.677679Z] [2018-01-24T17:04:12.677769Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.677895Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.677983Z] that was used when compiling the application program: [2018-01-24T17:04:12.678054Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.678142Z] Version included by the application program = 5 [2018-01-24T17:04:12.678164Z] [2018-01-24T17:04:12.678263Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.678310Z] with the CFITSIO library. [2018-01-24T17:04:12.678425Z] ____________________ PersistenceTestCase.testLossyFloatOurs ____________________ [2018-01-24T17:04:12.678520Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.678533Z] [2018-01-24T17:04:12.678667Z] self = [2018-01-24T17:04:12.678691Z] [2018-01-24T17:04:12.678760Z] def testLossyFloatOurs(self): [2018-01-24T17:04:12.678872Z] """Test lossy compression of floating-point images ourselves [2018-01-24T17:04:12.678893Z] [2018-01-24T17:04:12.679008Z] We do lossy compression by scaling first. We have full control over [2018-01-24T17:04:12.679134Z] the scaling (multiple scaling algorithms), and we have access to our [2018-01-24T17:04:12.679208Z] own masks when we do statistics. [2018-01-24T17:04:12.679260Z] """ [2018-01-24T17:04:12.679349Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.679426Z] algorithmList = ("GZIP", "GZIP_SHUFFLE", "RICE") [2018-01-24T17:04:12.679485Z] bitpixList = (16, 32) [2018-01-24T17:04:12.679578Z] quantizeList = (4.0, 10.0) [2018-01-24T17:04:12.679730Z] for cls, algorithm, bitpix, quantize in itertools.product(classList, algorithmList, bitpixList, [2018-01-24T17:04:12.679832Z] quantizeList): [2018-01-24T17:04:12.680007Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm), [2018-01-24T17:04:12.680111Z] quantizeLevel=0.0) [2018-01-24T17:04:12.680246Z] scaling = ImageScalingOptions(ImageScalingOptions.STDEV_BOTH, bitpix, quantizeLevel=quantize, [2018-01-24T17:04:12.680319Z] fuzz=True) [2018-01-24T17:04:12.680376Z] image = self.makeImage(cls) [2018-01-24T17:04:12.680498Z] > self.checkCompressedImage(cls, image, compression, scaling, atol=self.noise/quantize) [2018-01-24T17:04:12.680512Z] [2018-01-24T17:04:12.680564Z] tests/test_fitsCompression.py:590: [2018-01-24T17:04:12.680667Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.680745Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.680843Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.680914Z] tests/test_fitsCompression.py:816: in readWriteImage [2018-01-24T17:04:12.681008Z] return persistUnpersist(ImageClass, image, filename, additionalData) [2018-01-24T17:04:12.681111Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.681125Z] [2018-01-24T17:04:12.681200Z] ImageClass = [2018-01-24T17:04:12.681287Z] image = [2018-01-24T17:04:12.681443Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatOurs-VEt7wF.PersistenceTestCase.fits' [2018-01-24T17:04:12.681565Z] additionalData = [2018-01-24T17:04:12.681578Z] [2018-01-24T17:04:12.681669Z] def persistUnpersist(ImageClass, image, filename, additionalData): [2018-01-24T17:04:12.681766Z] """Use the persistence framework to persist and unpersist an image [2018-01-24T17:04:12.681783Z] [2018-01-24T17:04:12.681817Z] Parameters [2018-01-24T17:04:12.681851Z] ---------- [2018-01-24T17:04:12.681931Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.681974Z] Class of image. [2018-01-24T17:04:12.682065Z] image : `lsst.afw.image.Image` or `lsst.afw.image.MaskedImage` [2018-01-24T17:04:12.682112Z] Image to compress. [2018-01-24T17:04:12.682151Z] filename : `str` [2018-01-24T17:04:12.682198Z] Filename to write. [2018-01-24T17:04:12.682269Z] additionalData : `lsst.daf.base.PropertySet` [2018-01-24T17:04:12.682341Z] Additionl data for persistence framework. [2018-01-24T17:04:12.682359Z] [2018-01-24T17:04:12.682388Z] Returns [2018-01-24T17:04:12.682418Z] ------- [2018-01-24T17:04:12.682469Z] unpersisted : `ImageClass` [2018-01-24T17:04:12.682519Z] The unpersisted image. [2018-01-24T17:04:12.682545Z] """ [2018-01-24T17:04:12.682604Z] additionalData.set("visit", 12345) [2018-01-24T17:04:12.682658Z] additionalData.set("ccd", 67) [2018-01-24T17:04:12.682675Z] [2018-01-24T17:04:12.682795Z] persistence = lsst.daf.persistence.Persistence.getPersistence(lsst.pex.policy.Policy()) [2018-01-24T17:04:12.682913Z] logicalLocation = lsst.daf.persistence.LogicalLocation(filename) [2018-01-24T17:04:12.683055Z] storage = persistence.getRetrieveStorage("FitsStorage", logicalLocation) [2018-01-24T17:04:12.683171Z] storageList = lsst.daf.persistence.StorageList([storage]) [2018-01-24T17:04:12.683203Z] [2018-01-24T17:04:12.683290Z] persistence.persist(image, storageList, additionalData) [2018-01-24T17:04:12.683308Z] [2018-01-24T17:04:12.683345Z] classMenu = { [2018-01-24T17:04:12.683420Z] lsst.afw.image.ImageU: "ImageU", [2018-01-24T17:04:12.683500Z] lsst.afw.image.ImageI: "ImageI", [2018-01-24T17:04:12.683573Z] lsst.afw.image.ImageL: "ImageL", [2018-01-24T17:04:12.683654Z] lsst.afw.image.ImageF: "ImageF", [2018-01-24T17:04:12.683717Z] lsst.afw.image.ImageD: "ImageD", [2018-01-24T17:04:12.683786Z] lsst.afw.image.Mask: "Mask", [2018-01-24T17:04:12.683875Z] lsst.afw.image.MaskedImageF: "MaskedImageF", [2018-01-24T17:04:12.683904Z] } [2018-01-24T17:04:12.684037Z] > return persistence.unsafeRetrieve(classMenu[ImageClass], storageList, lsst.daf.base.PropertySet()) [2018-01-24T17:04:12.684085Z] E FitsError: [2018-01-24T17:04:12.684267Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.684597Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatOurs-VEt7wF.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.684669Z] E cfitsio error stack: [2018-01-24T17:04:12.684708Z] E {0} [2018-01-24T17:04:12.685000Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testLossyFloatOurs-VEt7wF.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.685062Z] E cfitsio error stack: [2018-01-24T17:04:12.685086Z] E ' [2018-01-24T17:04:12.685098Z] [2018-01-24T17:04:12.685160Z] tests/test_fitsCompression.py:785: FitsError [2018-01-24T17:04:12.685263Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.685276Z] [2018-01-24T17:04:12.685369Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.685468Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.685541Z] that was used when compiling the application program: [2018-01-24T17:04:12.685610Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.685678Z] Version included by the application program = 5 [2018-01-24T17:04:12.685691Z] [2018-01-24T17:04:12.685780Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.685821Z] with the CFITSIO library. [2018-01-24T17:04:12.685923Z] _________________________ PersistenceTestCase.testMask _________________________ [2018-01-24T17:04:12.686018Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.686031Z] [2018-01-24T17:04:12.686120Z] self = [2018-01-24T17:04:12.686133Z] [2018-01-24T17:04:12.686172Z] def testMask(self): [2018-01-24T17:04:12.686224Z] """Test compression of mask [2018-01-24T17:04:12.686242Z] [2018-01-24T17:04:12.686343Z] We deliberately don't test PLIO compression (which is designed for [2018-01-24T17:04:12.686446Z] masks) because our default mask type (32) has too much dynamic range [2018-01-24T17:04:12.686503Z] for PLIO (limit of 24 bits). [2018-01-24T17:04:12.686533Z] """ [2018-01-24T17:04:12.686611Z] for algorithm in ("GZIP", "GZIP_SHUFFLE", "RICE"): [2018-01-24T17:04:12.686743Z] compression = ImageCompressionOptions(lsst.afw.fits.compressionAlgorithmFromString(algorithm)) [2018-01-24T17:04:12.686795Z] mask = self.makeMask() [2018-01-24T17:04:12.686922Z] > unpersisted = self.checkCompressedImage(lsst.afw.image.Mask, mask, compression, atol=0.0) [2018-01-24T17:04:12.686934Z] [2018-01-24T17:04:12.686986Z] tests/test_fitsCompression.py:551: [2018-01-24T17:04:12.687089Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.687314Z] tests/test_fitsCompression.py:490: in checkCompressedImage [2018-01-24T17:04:12.687416Z] unpersisted = self.readWriteImage(ImageClass, image, filename, options) [2018-01-24T17:04:12.687488Z] tests/test_fitsCompression.py:816: in readWriteImage [2018-01-24T17:04:12.687582Z] return persistUnpersist(ImageClass, image, filename, additionalData) [2018-01-24T17:04:12.687684Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.687698Z] [2018-01-24T17:04:12.687779Z] ImageClass = [2018-01-24T17:04:12.687864Z] image = [2018-01-24T17:04:12.688034Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMask-LeDq0I.PersistenceTestCase.fits' [2018-01-24T17:04:12.688203Z] additionalData = [2018-01-24T17:04:12.688227Z] [2018-01-24T17:04:12.688358Z] def persistUnpersist(ImageClass, image, filename, additionalData): [2018-01-24T17:04:12.688469Z] """Use the persistence framework to persist and unpersist an image [2018-01-24T17:04:12.688493Z] [2018-01-24T17:04:12.688525Z] Parameters [2018-01-24T17:04:12.688567Z] ---------- [2018-01-24T17:04:12.688718Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.688777Z] Class of image. [2018-01-24T17:04:12.688882Z] image : `lsst.afw.image.Image` or `lsst.afw.image.MaskedImage` [2018-01-24T17:04:12.688933Z] Image to compress. [2018-01-24T17:04:12.688973Z] filename : `str` [2018-01-24T17:04:12.689020Z] Filename to write. [2018-01-24T17:04:12.689106Z] additionalData : `lsst.daf.base.PropertySet` [2018-01-24T17:04:12.689217Z] Additionl data for persistence framework. [2018-01-24T17:04:12.689264Z] [2018-01-24T17:04:12.689307Z] Returns [2018-01-24T17:04:12.689340Z] ------- [2018-01-24T17:04:12.689393Z] unpersisted : `ImageClass` [2018-01-24T17:04:12.689474Z] The unpersisted image. [2018-01-24T17:04:12.689507Z] """ [2018-01-24T17:04:12.689595Z] additionalData.set("visit", 12345) [2018-01-24T17:04:12.689665Z] additionalData.set("ccd", 67) [2018-01-24T17:04:12.689684Z] [2018-01-24T17:04:12.689827Z] persistence = lsst.daf.persistence.Persistence.getPersistence(lsst.pex.policy.Policy()) [2018-01-24T17:04:12.689933Z] logicalLocation = lsst.daf.persistence.LogicalLocation(filename) [2018-01-24T17:04:12.690035Z] storage = persistence.getRetrieveStorage("FitsStorage", logicalLocation) [2018-01-24T17:04:12.690122Z] storageList = lsst.daf.persistence.StorageList([storage]) [2018-01-24T17:04:12.690140Z] [2018-01-24T17:04:12.690222Z] persistence.persist(image, storageList, additionalData) [2018-01-24T17:04:12.690239Z] [2018-01-24T17:04:12.690275Z] classMenu = { [2018-01-24T17:04:12.690337Z] lsst.afw.image.ImageU: "ImageU", [2018-01-24T17:04:12.690398Z] lsst.afw.image.ImageI: "ImageI", [2018-01-24T17:04:12.690460Z] lsst.afw.image.ImageL: "ImageL", [2018-01-24T17:04:12.690521Z] lsst.afw.image.ImageF: "ImageF", [2018-01-24T17:04:12.690583Z] lsst.afw.image.ImageD: "ImageD", [2018-01-24T17:04:12.690640Z] lsst.afw.image.Mask: "Mask", [2018-01-24T17:04:12.690735Z] lsst.afw.image.MaskedImageF: "MaskedImageF", [2018-01-24T17:04:12.690764Z] } [2018-01-24T17:04:12.690917Z] > return persistence.unsafeRetrieve(classMenu[ImageClass], storageList, lsst.daf.base.PropertySet()) [2018-01-24T17:04:12.690965Z] E FitsError: [2018-01-24T17:04:12.691110Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.691362Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMask-LeDq0I.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.691413Z] E cfitsio error stack: [2018-01-24T17:04:12.691439Z] E {0} [2018-01-24T17:04:12.691702Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMask-LeDq0I.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.691748Z] E cfitsio error stack: [2018-01-24T17:04:12.691771Z] E ' [2018-01-24T17:04:12.691783Z] [2018-01-24T17:04:12.691864Z] tests/test_fitsCompression.py:785: FitsError [2018-01-24T17:04:12.691970Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.691983Z] [2018-01-24T17:04:12.692082Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.692191Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.692264Z] that was used when compiling the application program: [2018-01-24T17:04:12.692333Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.692401Z] Version included by the application program = 5 [2018-01-24T17:04:12.692414Z] [2018-01-24T17:04:12.692502Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.692542Z] with the CFITSIO library. [2018-01-24T17:04:12.692644Z] _____________________ PersistenceTestCase.testMaskedImage ______________________ [2018-01-24T17:04:12.692738Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.692751Z] [2018-01-24T17:04:12.692850Z] self = [2018-01-24T17:04:12.692863Z] [2018-01-24T17:04:12.692910Z] def testMaskedImage(self): [2018-01-24T17:04:12.692971Z] """Test compression of MaskedImage [2018-01-24T17:04:12.692988Z] [2018-01-24T17:04:12.693101Z] We test lossless, lossy cfitsio and lossy LSST compression. [2018-01-24T17:04:12.693147Z] """ [2018-01-24T17:04:12.693198Z] # Lossless [2018-01-24T17:04:12.693335Z] lossless = lsst.afw.fits.ImageCompressionOptions(ImageCompressionOptions.GZIP_SHUFFLE) [2018-01-24T17:04:12.693430Z] options = lsst.afw.fits.ImageWriteOptions(lossless) [2018-01-24T17:04:12.693533Z] > self.checkMaskedImage(options, options, options, atol=0.0) [2018-01-24T17:04:12.693552Z] [2018-01-24T17:04:12.693606Z] tests/test_fitsCompression.py:665: [2018-01-24T17:04:12.693736Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.693830Z] tests/test_fitsCompression.py:653: in checkMaskedImage [2018-01-24T17:04:12.693962Z] self.checkCompressedMaskedImage(image, imageOptions, maskOptions, varianceOptions, atol=atol) [2018-01-24T17:04:12.694050Z] tests/test_fitsCompression.py:626: in checkCompressedMaskedImage [2018-01-24T17:04:12.694165Z] self.readWriteMaskedImage(image, filename, imageOptions, maskOptions, varianceOptions) [2018-01-24T17:04:12.694243Z] tests/test_fitsCompression.py:836: in readWriteMaskedImage [2018-01-24T17:04:12.694356Z] return persistUnpersist(lsst.afw.image.MaskedImageF, image, filename, additionalData) [2018-01-24T17:04:12.694459Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.694473Z] [2018-01-24T17:04:12.694568Z] ImageClass = [2018-01-24T17:04:12.694675Z] image = [2018-01-24T17:04:12.694827Z] filename = '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMaskedImage-EnwRU0.PersistenceTestCase.fits' [2018-01-24T17:04:12.694948Z] additionalData = [2018-01-24T17:04:12.694961Z] [2018-01-24T17:04:12.695053Z] def persistUnpersist(ImageClass, image, filename, additionalData): [2018-01-24T17:04:12.695175Z] """Use the persistence framework to persist and unpersist an image [2018-01-24T17:04:12.695197Z] [2018-01-24T17:04:12.695230Z] Parameters [2018-01-24T17:04:12.695263Z] ---------- [2018-01-24T17:04:12.695343Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.695387Z] Class of image. [2018-01-24T17:04:12.695478Z] image : `lsst.afw.image.Image` or `lsst.afw.image.MaskedImage` [2018-01-24T17:04:12.695525Z] Image to compress. [2018-01-24T17:04:12.695564Z] filename : `str` [2018-01-24T17:04:12.695611Z] Filename to write. [2018-01-24T17:04:12.695683Z] additionalData : `lsst.daf.base.PropertySet` [2018-01-24T17:04:12.695755Z] Additionl data for persistence framework. [2018-01-24T17:04:12.695772Z] [2018-01-24T17:04:12.695802Z] Returns [2018-01-24T17:04:12.695831Z] ------- [2018-01-24T17:04:12.695881Z] unpersisted : `ImageClass` [2018-01-24T17:04:12.695932Z] The unpersisted image. [2018-01-24T17:04:12.695958Z] """ [2018-01-24T17:04:12.696018Z] additionalData.set("visit", 12345) [2018-01-24T17:04:12.696072Z] additionalData.set("ccd", 67) [2018-01-24T17:04:12.696089Z] [2018-01-24T17:04:12.696208Z] persistence = lsst.daf.persistence.Persistence.getPersistence(lsst.pex.policy.Policy()) [2018-01-24T17:04:12.696302Z] logicalLocation = lsst.daf.persistence.LogicalLocation(filename) [2018-01-24T17:04:12.696404Z] storage = persistence.getRetrieveStorage("FitsStorage", logicalLocation) [2018-01-24T17:04:12.696490Z] storageList = lsst.daf.persistence.StorageList([storage]) [2018-01-24T17:04:12.696507Z] [2018-01-24T17:04:12.696591Z] persistence.persist(image, storageList, additionalData) [2018-01-24T17:04:12.696608Z] [2018-01-24T17:04:12.696644Z] classMenu = { [2018-01-24T17:04:12.696706Z] lsst.afw.image.ImageU: "ImageU", [2018-01-24T17:04:12.696768Z] lsst.afw.image.ImageI: "ImageI", [2018-01-24T17:04:12.696830Z] lsst.afw.image.ImageL: "ImageL", [2018-01-24T17:04:12.696892Z] lsst.afw.image.ImageF: "ImageF", [2018-01-24T17:04:12.696955Z] lsst.afw.image.ImageD: "ImageD", [2018-01-24T17:04:12.697014Z] lsst.afw.image.Mask: "Mask", [2018-01-24T17:04:12.697128Z] lsst.afw.image.MaskedImageF: "MaskedImageF", [2018-01-24T17:04:12.697165Z] } [2018-01-24T17:04:12.697359Z] > return persistence.unsafeRetrieve(classMenu[ImageClass], storageList, lsst.daf.base.PropertySet()) [2018-01-24T17:04:12.697400Z] E FitsError: [2018-01-24T17:04:12.697558Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.697814Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMaskedImage-EnwRU0.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.697862Z] E cfitsio error stack: [2018-01-24T17:04:12.697889Z] E {0} [2018-01-24T17:04:12.698162Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testMaskedImage-EnwRU0.PersistenceTestCase.fits' with mode 'r' [2018-01-24T17:04:12.698209Z] E cfitsio error stack: [2018-01-24T17:04:12.698232Z] E ' [2018-01-24T17:04:12.698245Z] [2018-01-24T17:04:12.698307Z] tests/test_fitsCompression.py:785: FitsError [2018-01-24T17:04:12.698408Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.698421Z] [2018-01-24T17:04:12.698513Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.698611Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.698683Z] that was used when compiling the application program: [2018-01-24T17:04:12.698751Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.698819Z] Version included by the application program = 5 [2018-01-24T17:04:12.698831Z] [2018-01-24T17:04:12.698919Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.698959Z] with the CFITSIO library. [2018-01-24T17:04:12.699060Z] ___________________ EmptyExposureTestCase.testEmptyExposure ____________________ [2018-01-24T17:04:12.699154Z] [gw6] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.699167Z] [2018-01-24T17:04:12.699268Z] self = [2018-01-24T17:04:12.699281Z] [2018-01-24T17:04:12.699329Z] def testEmptyExposure(self): [2018-01-24T17:04:12.699404Z] """Persist an empty Exposure with compression""" [2018-01-24T17:04:12.699479Z] algorithmList = ("GZIP", "GZIP_SHUFFLE", "RICE") [2018-01-24T17:04:12.699534Z] for algorithm in algorithmList: [2018-01-24T17:04:12.699649Z] > self.checkEmptyExposure(lsst.afw.fits.compressionAlgorithmFromString(algorithm)) [2018-01-24T17:04:12.699662Z] [2018-01-24T17:04:12.699713Z] tests/test_fitsCompression.py:872: [2018-01-24T17:04:12.699814Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.699827Z] [2018-01-24T17:04:12.699928Z] self = [2018-01-24T17:04:12.699983Z] algorithm = CompressionAlgorithm.GZIP [2018-01-24T17:04:12.699995Z] [2018-01-24T17:04:12.700056Z] def checkEmptyExposure(self, algorithm): [2018-01-24T17:04:12.700129Z] """Check that we can persist an empty Exposure [2018-01-24T17:04:12.700146Z] [2018-01-24T17:04:12.700183Z] Parameters [2018-01-24T17:04:12.700220Z] ---------- [2018-01-24T17:04:12.700325Z] algorithm : `lsst.afw.fits.ImageCompressionOptions.CompressionAlgorithm` [2018-01-24T17:04:12.700389Z] Compression algorithm to try. [2018-01-24T17:04:12.700418Z] """ [2018-01-24T17:04:12.700480Z] exp = lsst.afw.image.ExposureF(0, 0) [2018-01-24T17:04:12.700535Z] degrees = lsst.afw.geom.degrees [2018-01-24T17:04:12.700662Z] exp.setWcs(lsst.afw.image.makeWcs(lsst.afw.coord.Coord(0*degrees, 0*degrees), [2018-01-24T17:04:12.700764Z] lsst.afw.geom.Point2D(0.0, 0.0), [2018-01-24T17:04:12.700865Z] 1.0e-4, 0.0, 0.0, 1.0e-4)) [2018-01-24T17:04:12.700994Z] imageOptions = lsst.afw.fits.ImageWriteOptions(ImageCompressionOptions(algorithm)) [2018-01-24T17:04:12.701132Z] maskOptions = lsst.afw.fits.ImageWriteOptions(exp.getMaskedImage().getMask()) [2018-01-24T17:04:12.701255Z] varianceOptions = lsst.afw.fits.ImageWriteOptions(ImageCompressionOptions(algorithm)) [2018-01-24T17:04:12.701343Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.701444Z] exp.writeFits(filename, imageOptions, maskOptions, varianceOptions) [2018-01-24T17:04:12.701507Z] > unpersisted = type(exp)(filename) [2018-01-24T17:04:12.701546Z] E FitsError: [2018-01-24T17:04:12.701696Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.701924Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testEmptyExposure-a1ppSp.fits' with mode 'r' [2018-01-24T17:04:12.701974Z] E cfitsio error stack: [2018-01-24T17:04:12.702005Z] E {0} [2018-01-24T17:04:12.702260Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testEmptyExposure-a1ppSp.fits' with mode 'r' [2018-01-24T17:04:12.702310Z] E cfitsio error stack: [2018-01-24T17:04:12.702365Z] E ' [2018-01-24T17:04:12.702382Z] [2018-01-24T17:04:12.702460Z] tests/test_fitsCompression.py:864: FitsError [2018-01-24T17:04:12.702578Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.702593Z] [2018-01-24T17:04:12.702688Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.702788Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.702860Z] that was used when compiling the application program: [2018-01-24T17:04:12.702929Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.702999Z] Version included by the application program = 5 [2018-01-24T17:04:12.703012Z] [2018-01-24T17:04:12.703101Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.703142Z] with the CFITSIO library. [2018-01-24T17:04:12.703243Z] __________________________ PolygonTest.testReadWrite ___________________________ [2018-01-24T17:04:12.703337Z] [gw5] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.703350Z] [2018-01-24T17:04:12.703427Z] self = [2018-01-24T17:04:12.703441Z] [2018-01-24T17:04:12.703485Z] def testReadWrite(self): [2018-01-24T17:04:12.703576Z] """Test that polygons can be read and written to fits files""" [2018-01-24T17:04:12.703625Z] for num in range(3, 30): [2018-01-24T17:04:12.703677Z] poly = self.polygon(num) [2018-01-24T17:04:12.703769Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.703826Z] poly.writeFits(filename) [2018-01-24T17:04:12.703904Z] > poly2 = afwGeom.Polygon.readFits(filename) [2018-01-24T17:04:12.703946Z] E FitsError: [2018-01-24T17:04:12.704127Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.704366Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_polygon_testReadWrite-iJR3Ni.fits' with mode 'r' [2018-01-24T17:04:12.704433Z] E cfitsio error stack: [2018-01-24T17:04:12.704471Z] E {0} [2018-01-24T17:04:12.704737Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_polygon_testReadWrite-iJR3Ni.fits' with mode 'r' [2018-01-24T17:04:12.704794Z] E cfitsio error stack: [2018-01-24T17:04:12.704826Z] E ' [2018-01-24T17:04:12.704839Z] [2018-01-24T17:04:12.704891Z] tests/test_polygon.py:367: FitsError [2018-01-24T17:04:12.704993Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.705006Z] [2018-01-24T17:04:12.705098Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.705197Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.705268Z] that was used when compiling the application program: [2018-01-24T17:04:12.705336Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.705404Z] Version included by the application program = 5 [2018-01-24T17:04:12.705416Z] [2018-01-24T17:04:12.705504Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.705544Z] with the CFITSIO library. [2018-01-24T17:04:12.705645Z] _______________________ BackgroundTestCase.testTicket987 _______________________ [2018-01-24T17:04:12.705739Z] [gw3] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.705752Z] [2018-01-24T17:04:12.705840Z] self = [2018-01-24T17:04:12.705852Z] [2018-01-24T17:04:12.705933Z] @unittest.skipIf(AfwdataDir is None, "afwdata not setup") [2018-01-24T17:04:12.705976Z] def testTicket987(self): [2018-01-24T17:04:12.706065Z] """This code used to abort; so the test is that it doesn't""" [2018-01-24T17:04:12.706114Z] imagePath = os.path.join( [2018-01-24T17:04:12.706228Z] AfwdataDir, "DC3a-Sim", "sci", "v5-e0", "v5-e0-c011-a00.sci.fits") [2018-01-24T17:04:12.706317Z] > mimg = afwImage.MaskedImageF(imagePath) [2018-01-24T17:04:12.706355Z] E FitsError: [2018-01-24T17:04:12.706499Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.706720Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/DC3a-Sim/sci/v5-e0/v5-e0-c011-a00.sci.fits' with mode 'r' [2018-01-24T17:04:12.706766Z] E cfitsio error stack: [2018-01-24T17:04:12.706793Z] E {0} [2018-01-24T17:04:12.707041Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/DC3a-Sim/sci/v5-e0/v5-e0-c011-a00.sci.fits' with mode 'r' [2018-01-24T17:04:12.707086Z] E cfitsio error stack: [2018-01-24T17:04:12.707109Z] E ' [2018-01-24T17:04:12.707121Z] [2018-01-24T17:04:12.707177Z] tests/test_background.py:235: FitsError [2018-01-24T17:04:12.707278Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.707291Z] [2018-01-24T17:04:12.707383Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.707481Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.707552Z] that was used when compiling the application program: [2018-01-24T17:04:12.707635Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.707731Z] Version included by the application program = 5 [2018-01-24T17:04:12.707755Z] [2018-01-24T17:04:12.707858Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.707906Z] with the CFITSIO library. [2018-01-24T17:04:12.708020Z] _______________________ CameraGeomTestCase.testAssembly ________________________ [2018-01-24T17:04:12.708139Z] [gw3] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.708157Z] [2018-01-24T17:04:12.708245Z] self = [2018-01-24T17:04:12.708259Z] [2018-01-24T17:04:12.708294Z] def setUp(self): [2018-01-24T17:04:12.708385Z] self.lsstCamWrapper = testUtils.CameraWrapper(isLsstLike=True) [2018-01-24T17:04:12.708475Z] self.scCamWrapper = testUtils.CameraWrapper(isLsstLike=False) [2018-01-24T17:04:12.708562Z] self.cameraList = (self.lsstCamWrapper, self.scCamWrapper) [2018-01-24T17:04:12.708608Z] self.assemblyList = {} [2018-01-24T17:04:12.708695Z] self.assemblyList[self.lsstCamWrapper.camera.getName()] =\ [2018-01-24T17:04:12.708789Z] [afwImage.ImageU(os.path.join(testPath, 'test_amp.fits.gz')) [2018-01-24T17:04:12.708836Z] > for i in range(8)] [2018-01-24T17:04:12.708871Z] E FitsError: [2018-01-24T17:04:12.709016Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.709193Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.709238Z] E cfitsio error stack: [2018-01-24T17:04:12.709265Z] E {0} [2018-01-24T17:04:12.709470Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/test_amp.fits.gz' with mode 'r' [2018-01-24T17:04:12.709517Z] E cfitsio error stack: [2018-01-24T17:04:12.709539Z] E ' [2018-01-24T17:04:12.709552Z] [2018-01-24T17:04:12.709607Z] tests/test_cameraGeom.py:61: FitsError [2018-01-24T17:04:12.709710Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.709751Z] [2018-01-24T17:04:12.709847Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.709947Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.710019Z] that was used when compiling the application program: [2018-01-24T17:04:12.710088Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.710158Z] Version included by the application program = 5 [2018-01-24T17:04:12.710170Z] [2018-01-24T17:04:12.710259Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.710300Z] with the CFITSIO library. [2018-01-24T17:04:12.710403Z] __ UtilsBinaryTester.test_exe__Volumes_PS1_lsstsw_build_afw_tests_statistics ___ [2018-01-24T17:04:12.710497Z] [gw3] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.710510Z] [2018-01-24T17:04:12.710650Z] args = (,) [2018-01-24T17:04:12.710792Z] self = [2018-01-24T17:04:12.710806Z] [2018-01-24T17:04:12.710859Z] def test_executable_runs(*args): [2018-01-24T17:04:12.710896Z] self = args[0] [2018-01-24T17:04:12.710956Z] > self.assertExecutable(executable) [2018-01-24T17:04:12.710969Z] [2018-01-24T17:04:12.711084Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:275: [2018-01-24T17:04:12.711200Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.711384Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:249: in assertExecutable [2018-01-24T17:04:12.711438Z] self.fail(msg) [2018-01-24T17:04:12.711595Z] E AssertionError: Bad exit status from '/Volumes/PS1/lsstsw/build/afw/tests/statistics': 201 [2018-01-24T17:04:12.711706Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.711818Z] Running executable '/Volumes/PS1/lsstsw/build/afw/tests/statistics' with no arguments... [2018-01-24T17:04:12.711871Z] Running 4 test cases... [2018-01-24T17:04:12.711884Z] [2018-01-24T17:04:12.711988Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.712087Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.712158Z] that was used when compiling the application program: [2018-01-24T17:04:12.712227Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.712295Z] Version included by the application program = 5 [2018-01-24T17:04:12.712308Z] [2018-01-24T17:04:12.712396Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.712437Z] with the CFITSIO library. [2018-01-24T17:04:12.712736Z] unknown location:0: fatal error: in "StatisticsTestImages": lsst::afw::fits::FitsError: cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/Statistics/v1_i1_g_m400_s20_f.fits' with mode 'r' [2018-01-24T17:04:12.712774Z] cfitsio error stack: [2018-01-24T17:04:12.712787Z] [2018-01-24T17:04:12.712878Z] tests/statistics.cc:241: last checkpoint: "StatisticsTestImages" entry. [2018-01-24T17:04:12.712891Z] [2018-01-24T17:04:12.712992Z] ----------------------------- Captured stderr call ----------------------------- [2018-01-24T17:04:12.713005Z] [2018-01-24T17:04:12.713080Z] *** 1 failure is detected in the test module "Statistics" [2018-01-24T17:04:12.713182Z] ____________________ ExposureTestCase.testDeepCopyMetadata _____________________ [2018-01-24T17:04:12.713277Z] [gw3] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.713290Z] [2018-01-24T17:04:12.713382Z] self = [2018-01-24T17:04:12.713394Z] [2018-01-24T17:04:12.713429Z] def setUp(self): [2018-01-24T17:04:12.713508Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.713542Z] E FitsError: [2018-01-24T17:04:12.713689Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.713895Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.713945Z] E cfitsio error stack: [2018-01-24T17:04:12.713972Z] E {0} [2018-01-24T17:04:12.714194Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.714240Z] E cfitsio error stack: [2018-01-24T17:04:12.714263Z] E ' [2018-01-24T17:04:12.714276Z] [2018-01-24T17:04:12.714328Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.714430Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.714443Z] [2018-01-24T17:04:12.714535Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.714633Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.714705Z] that was used when compiling the application program: [2018-01-24T17:04:12.714791Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.714874Z] Version included by the application program = 5 [2018-01-24T17:04:12.714889Z] [2018-01-24T17:04:12.714995Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.715052Z] with the CFITSIO library. [2018-01-24T17:04:12.715159Z] _______________________ ExposureTestCase.testSetMembers ________________________ [2018-01-24T17:04:12.715256Z] [gw3] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.715270Z] [2018-01-24T17:04:12.715356Z] self = [2018-01-24T17:04:12.715369Z] [2018-01-24T17:04:12.715404Z] def setUp(self): [2018-01-24T17:04:12.715485Z] > maskedImage = afwImage.MaskedImageF(inFilePathSmall) [2018-01-24T17:04:12.715519Z] E FitsError: [2018-01-24T17:04:12.715665Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.715863Z] E cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.715909Z] E cfitsio error stack: [2018-01-24T17:04:12.715936Z] E {0} [2018-01-24T17:04:12.716161Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/small_MI.fits' with mode 'r' [2018-01-24T17:04:12.716207Z] E cfitsio error stack: [2018-01-24T17:04:12.716230Z] E ' [2018-01-24T17:04:12.716243Z] [2018-01-24T17:04:12.716296Z] tests/test_exposure.py:72: FitsError [2018-01-24T17:04:12.716399Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.716412Z] [2018-01-24T17:04:12.716505Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.716605Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.716678Z] that was used when compiling the application program: [2018-01-24T17:04:12.716747Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.716816Z] Version included by the application program = 5 [2018-01-24T17:04:12.716829Z] [2018-01-24T17:04:12.716918Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.716959Z] with the CFITSIO library. [2018-01-24T17:04:12.718350Z] _____________________________ Ticket2905Test.test ______________________________ [2018-01-24T17:04:12.718524Z] [gw7] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.718565Z] [2018-01-24T17:04:12.718640Z] self = [2018-01-24T17:04:12.718654Z] [2018-01-24T17:04:12.718697Z] def test(self): [2018-01-24T17:04:12.718793Z] path = os.path.join(testPath, "data", "ticket2905.fits") [2018-01-24T17:04:12.718851Z] > md = afwImage.readMetadata(path) [2018-01-24T17:04:12.718884Z] E FitsError: [2018-01-24T17:04:12.719025Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.719202Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ticket2905.fits' with mode 'r' [2018-01-24T17:04:12.719246Z] E cfitsio error stack: [2018-01-24T17:04:12.719271Z] E {0} [2018-01-24T17:04:12.719474Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/ticket2905.fits' with mode 'r' [2018-01-24T17:04:12.719519Z] E cfitsio error stack: [2018-01-24T17:04:12.719541Z] E ' [2018-01-24T17:04:12.719553Z] [2018-01-24T17:04:12.719606Z] tests/test_ticket2905.py:42: FitsError [2018-01-24T17:04:12.719706Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.719719Z] [2018-01-24T17:04:12.719809Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.719905Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.719989Z] that was used when compiling the application program: [2018-01-24T17:04:12.720057Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.720126Z] Version included by the application program = 5 [2018-01-24T17:04:12.720138Z] [2018-01-24T17:04:12.720239Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.720279Z] with the CFITSIO library. [2018-01-24T17:04:12.721737Z] ________________________ ImageScalingTestCase.testStdev ________________________ [2018-01-24T17:04:12.721909Z] [gw3] darwin -- Python 2.7.12 /Volumes/PS1/lsstsw/miniconda/bin/python2.7 [2018-01-24T17:04:12.721933Z] [2018-01-24T17:04:12.722038Z] self = [2018-01-24T17:04:12.722063Z] [2018-01-24T17:04:12.722106Z] def testStdev(self): [2018-01-24T17:04:12.722222Z] """Test that the STDEV scalings work on floating-point inputs [2018-01-24T17:04:12.722239Z] [2018-01-24T17:04:12.722338Z] We deliberately don't include BITPIX=64 because int64 provides [2018-01-24T17:04:12.722430Z] a larger dynamic range than 'double BSCALE' can handle. [2018-01-24T17:04:12.722447Z] [2018-01-24T17:04:12.722559Z] We deliberately don't include BITPIX=8 because that provides [2018-01-24T17:04:12.722662Z] only a tiny dynamic range where everything goes out of range easily. [2018-01-24T17:04:12.722691Z] """ [2018-01-24T17:04:12.722782Z] classList = (lsst.afw.image.ImageF, lsst.afw.image.ImageD) [2018-01-24T17:04:12.722853Z] bitpixList = (16, 32) [2018-01-24T17:04:12.723024Z] algorithmList = (ImageScalingOptions.STDEV_POSITIVE, ImageScalingOptions.STDEV_NEGATIVE, [2018-01-24T17:04:12.723137Z] ImageScalingOptions.STDEV_BOTH) [2018-01-24T17:04:12.723245Z] quantizeLevelList = (2.0, 10.0, 100.0) [2018-01-24T17:04:12.723318Z] quantizePadList = (5.0, 10.0, 100.0) [2018-01-24T17:04:12.723421Z] for values in itertools.product(classList, bitpixList, algorithmList, [2018-01-24T17:04:12.723534Z] quantizeLevelList, quantizePadList): [2018-01-24T17:04:12.723623Z] > self.checkStdev(*values) [2018-01-24T17:04:12.723648Z] [2018-01-24T17:04:12.723702Z] tests/test_fitsCompression.py:311: [2018-01-24T17:04:12.723805Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.723871Z] tests/test_fitsCompression.py:276: in checkStdev [2018-01-24T17:04:12.723949Z] makeImageResults = self.makeImage(ImageClass, scaling) [2018-01-24T17:04:12.724051Z] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ [2018-01-24T17:04:12.724064Z] [2018-01-24T17:04:12.724155Z] self = [2018-01-24T17:04:12.724231Z] ImageClass = [2018-01-24T17:04:12.724436Z] scaling = ImageScalingOptions(algorithm=u'STDEV_POSITIVE', bitpix=16, maskPlanes=[u'BAD'...vel=2.000000, quantizePad=5.000000, fuzz=False, bscale=1.000000, bzero=0.000000 [2018-01-24T17:04:12.724467Z] addNoise = True [2018-01-24T17:04:12.724480Z] [2018-01-24T17:04:12.724559Z] def makeImage(self, ImageClass, scaling, addNoise=True): [2018-01-24T17:04:12.724612Z] """Make an image for testing [2018-01-24T17:04:12.724629Z] [2018-01-24T17:04:12.724716Z] We create an image, persist and unpersist it, returning [2018-01-24T17:04:12.724769Z] some data to the caller. [2018-01-24T17:04:12.724786Z] [2018-01-24T17:04:12.724823Z] Parameters [2018-01-24T17:04:12.724860Z] ---------- [2018-01-24T17:04:12.724943Z] ImageClass : `type`, an `lsst.afw.image.Image` class [2018-01-24T17:04:12.725002Z] Class of image to create. [2018-01-24T17:04:12.725078Z] scaling : `lsst.afw.fits.ImageScalingOptions` [2018-01-24T17:04:12.725150Z] Scaling to apply during persistence. [2018-01-24T17:04:12.725195Z] addNoise : `bool` [2018-01-24T17:04:12.725247Z] Add noise to image? [2018-01-24T17:04:12.725264Z] [2018-01-24T17:04:12.725297Z] Returns [2018-01-24T17:04:12.725331Z] ------- [2018-01-24T17:04:12.725404Z] image : `lsst.afw.image.Image` (ImageClass) [2018-01-24T17:04:12.725451Z] Created image. [2018-01-24T17:04:12.725532Z] unpersisted : `lsst.afw.image.Image` (ImageClass) [2018-01-24T17:04:12.725582Z] Unpersisted image. [2018-01-24T17:04:12.725634Z] bscale, bzero : `float` [2018-01-24T17:04:12.725699Z] FITS scale factor and zero used. [2018-01-24T17:04:12.725757Z] minValue, maxValue : `float` [2018-01-24T17:04:12.725848Z] Minimum and maximum value given the nominated scaling. [2018-01-24T17:04:12.725877Z] """ [2018-01-24T17:04:12.725930Z] image = ImageClass(self.bbox) [2018-01-24T17:04:12.725994Z] mask = lsst.afw.image.Mask(self.bbox) [2018-01-24T17:04:12.726050Z] mask.addMaskPlane(self.badMask) [2018-01-24T17:04:12.726116Z] bad = mask.getPlaneBitMask(self.badMask) [2018-01-24T17:04:12.726160Z] image.set(self.base) [2018-01-24T17:04:12.726252Z] image.set(self.highPixel[0], self.highPixel[1], self.highValue) [2018-01-24T17:04:12.726340Z] image.set(self.lowPixel[0], self.lowPixel[1], self.lowValue) [2018-01-24T17:04:12.726438Z] image.set(self.maskedPixel[0], self.maskedPixel[1], self.maskedValue) [2018-01-24T17:04:12.726521Z] mask.set(self.maskedPixel[0], self.maskedPixel[1], bad) [2018-01-24T17:04:12.726538Z] [2018-01-24T17:04:12.726608Z] rng = np.random.RandomState(12345) [2018-01-24T17:04:12.726658Z] dtype = image.getArray().dtype [2018-01-24T17:04:12.726690Z] if addNoise: [2018-01-24T17:04:12.726898Z] image.getArray()[:] += rng.normal(0.0, self.stdev, image.getArray().shape).astype(dtype) [2018-01-24T17:04:12.726930Z] [2018-01-24T17:04:12.727020Z] with lsst.utils.tests.getTempFilePath(".fits") as filename: [2018-01-24T17:04:12.727128Z] with lsst.afw.fits.Fits(filename, "w") as fits: [2018-01-24T17:04:12.727224Z] options = lsst.afw.fits.ImageWriteOptions(scaling) [2018-01-24T17:04:12.727329Z] header = lsst.daf.base.PropertyList() [2018-01-24T17:04:12.727407Z] image.writeFits(fits, options, header, mask) [2018-01-24T17:04:12.727479Z] > unpersisted = ImageClass(filename) [2018-01-24T17:04:12.727514Z] E FitsError: [2018-01-24T17:04:12.727660Z] E File "src/fits.cc", line 1270, in lsst::afw::fits::Fits::Fits(const std::string &, const std::string &, int) [2018-01-24T17:04:12.727862Z] E cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testStdev-ZBh26e.fits' with mode 'r' [2018-01-24T17:04:12.727924Z] E cfitsio error stack: [2018-01-24T17:04:12.727954Z] E {0} [2018-01-24T17:04:12.728203Z] E lsst::afw::fits::FitsError: 'cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsCompression_testStdev-ZBh26e.fits' with mode 'r' [2018-01-24T17:04:12.728261Z] E cfitsio error stack: [2018-01-24T17:04:12.728285Z] E ' [2018-01-24T17:04:12.728296Z] [2018-01-24T17:04:12.728365Z] tests/test_fitsCompression.py:146: FitsError [2018-01-24T17:04:12.728459Z] ----------------------------- Captured stdout call ----------------------------- [2018-01-24T17:04:12.728470Z] [2018-01-24T17:04:12.728555Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.728658Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.728722Z] that was used when compiling the application program: [2018-01-24T17:04:12.728784Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.728845Z] Version included by the application program = 5 [2018-01-24T17:04:12.728856Z] [2018-01-24T17:04:12.728935Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.728971Z] with the CFITSIO library. [2018-01-24T17:04:12.729062Z] =============================== warnings summary =============================== [2018-01-24T17:04:12.729143Z] tests/test_methods.py::TestTestUtils::testAssertWcssAlmostEqualOverBBox [2018-01-24T17:04:12.729277Z] /Volumes/PS1/lsstsw/build/afw/tests/test_methods.py:309: DeprecationWarning: Deprecated. Use assertWcsAlmostEqualOverBBox [2018-01-24T17:04:12.729346Z] maxDiffSky=1e-7*afwGeom.arcseconds, maxDiffPix=1e-7) [2018-01-24T17:04:12.729357Z] [2018-01-24T17:04:12.729433Z] tests/test_methods.py::TestTestUtils::testAssertAnglesAlmostEqual [2018-01-24T17:04:12.729561Z] /Volumes/PS1/lsstsw/build/afw/tests/test_methods.py:72: DeprecationWarning: Deprecated. Use assertAnglesAlmostEqual [2018-01-24T17:04:12.729612Z] maxDiff=0.010001*afwGeom.arcseconds, [2018-01-24T17:04:12.729624Z] [2018-01-24T17:04:12.729698Z] tests/test_methods.py::TestTestUtils::testAssertBoxesAlmostEqual [2018-01-24T17:04:12.729826Z] /Volumes/PS1/lsstsw/build/afw/tests/test_methods.py:149: DeprecationWarning: Deprecated. Use assertBoxesAlmostEqual [2018-01-24T17:04:12.729878Z] box0, box1, maxDiff=radDiff*1.00001) [2018-01-24T17:04:12.729889Z] [2018-01-24T17:04:12.729965Z] tests/test_methods.py::TestTestUtils::testAssertCoordsAlmostEqual [2018-01-24T17:04:12.730094Z] /Volumes/PS1/lsstsw/build/afw/tests/test_methods.py:180: DeprecationWarning: Deprecated. Use assertCoordsAlmostEqual [2018-01-24T17:04:12.730157Z] coord0, coord0, maxDiff=1e-7*afwGeom.arcseconds) [2018-01-24T17:04:12.730169Z] [2018-01-24T17:04:12.730246Z] tests/test_methods.py::TestTestUtils::testAssertImagesAlmostEqual [2018-01-24T17:04:12.730401Z] /Volumes/PS1/lsstsw/build/afw/tests/test_methods.py:359: DeprecationWarning: Deprecated. Use assertMaskedImagesAlmostEqual [2018-01-24T17:04:12.730503Z] self.assertMaskedImagesNearlyEqual(mi1, mi0, atol=0, rtol=0) [2018-01-24T17:04:12.730649Z] /Volumes/PS1/lsstsw/build/afw/tests/test_methods.py:374: DeprecationWarning: Deprecated. Use assertImagesAlmostEqual [2018-01-24T17:04:12.730734Z] self.assertImagesNearlyEqual(plane0, plane1, atol=0, rtol=0) [2018-01-24T17:04:12.730747Z] [2018-01-24T17:04:12.730841Z] tests/test_methods.py::TestTestUtils::testAssertPairsAlmostEqual [2018-01-24T17:04:12.730981Z] /Volumes/PS1/lsstsw/build/afw/tests/test_methods.py:268: DeprecationWarning: Deprecated. Use assertPairsAlmostEqual [2018-01-24T17:04:12.731093Z] self.assertPairsNearlyEqual(pair0, pair0, maxDiff=1e-7) [2018-01-24T17:04:12.731107Z] [2018-01-24T17:04:12.731195Z] tests/test_sourceTable.py::SourceTableTestCase::testGetNonContiguous [2018-01-24T17:04:12.731482Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:584: DeprecationWarning: numpy boolean subtract, the `-` operator, is deprecated, use the bitwise_xor, the `^` operator, or the logical_xor function instead. [2018-01-24T17:04:12.731532Z] diff = lhs - rhs [2018-01-24T17:04:12.731813Z] /Users/wmwv/lsstsw/stack/DarwinX86/utils/14.0-8-g1f982c9+2/python/lsst/utils/tests.py:585: DeprecationWarning: numpy boolean subtract, the `-` operator, is deprecated, use the bitwise_xor, the `^` operator, or the logical_xor function instead. [2018-01-24T17:04:12.731875Z] absDiff = numpy.abs(lhs - rhs) [2018-01-24T17:04:12.731904Z] [2018-01-24T17:04:12.731976Z] -- Docs: http://doc.pytest.org/en/latest/warnings.html [2018-01-24T17:04:12.732078Z] == 217 failed, 1102 passed, 17 skipped, 9 warnings, 16 error in 68.90 seconds == [2018-01-24T17:04:12.789209Z] Global pytest run: failed [2018-01-24T17:04:12.833945Z] Failed test output: [2018-01-24T17:04:12.840472Z] tests/background [2018-01-24T17:04:12.840501Z] [2018-01-24T17:04:12.840541Z] Running 4 test cases... [2018-01-24T17:04:12.840554Z] [2018-01-24T17:04:12.840645Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.840742Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.840827Z] that was used when compiling the application program: [2018-01-24T17:04:12.840897Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.840967Z] Version included by the application program = 5 [2018-01-24T17:04:12.840979Z] [2018-01-24T17:04:12.841068Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.841110Z] with the CFITSIO library. [2018-01-24T17:04:12.841419Z] unknown location:0: fatal error: in "BackgroundTestImages": lsst::afw::fits::FitsError: cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/Statistics/v1_i1_g_m400_s20_f.fits' with mode 'r' [2018-01-24T17:04:12.841454Z] cfitsio error stack: [2018-01-24T17:04:12.841466Z] [2018-01-24T17:04:12.841575Z] tests/background.cc:84: last checkpoint: "BackgroundTestImages" entry. [2018-01-24T17:04:12.841588Z] [2018-01-24T17:04:12.841662Z] *** 1 failure is detected in the test module "Background" [2018-01-24T17:04:12.842672Z] tests/maskedImage1 [2018-01-24T17:04:12.842697Z] [2018-01-24T17:04:12.842710Z] [2018-01-24T17:04:12.842822Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.842935Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.843008Z] that was used when compiling the application program: [2018-01-24T17:04:12.843077Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.843171Z] Version included by the application program = 5 [2018-01-24T17:04:12.843182Z] [2018-01-24T17:04:12.843264Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.843302Z] with the CFITSIO library. [2018-01-24T17:04:12.843577Z] Failed to open /Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits: cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/871034p_1_MI.fits' with mode 'r' [2018-01-24T17:04:12.843612Z] cfitsio error stack: [2018-01-24T17:04:12.843623Z] [2018-01-24T17:04:12.843652Z] No leaks detected [2018-01-24T17:04:12.843768Z] Global pytest output is in /Volumes/PS1/lsstsw/build/afw/tests/.tests/pytest-afw.xml.failed [2018-01-24T17:04:12.844906Z] tests/ramFitsIO [2018-01-24T17:04:12.844945Z] [2018-01-24T17:04:12.845055Z] filepath A: /Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/fpC-005902-r6-0677_sub.fits [2018-01-24T17:04:12.845109Z] filepath B: fpC-005902-r6-0677_sub.fits [2018-01-24T17:04:12.845140Z] Testing RAM FITS... [2018-01-24T17:04:12.845153Z] [2018-01-24T17:04:12.845183Z] Running test 6... [2018-01-24T17:04:12.845195Z] [2018-01-24T17:04:12.845281Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.845388Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.845459Z] that was used when compiling the application program: [2018-01-24T17:04:12.845526Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.845593Z] Version included by the application program = 5 [2018-01-24T17:04:12.845605Z] [2018-01-24T17:04:12.845692Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.845743Z] with the CFITSIO library. [2018-01-24T17:04:12.845788Z] Caught the following exception: [2018-01-24T17:04:12.845975Z] cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/data/fpC-005902-r6-0677_sub.fits' with mode 'r' [2018-01-24T17:04:12.846009Z] cfitsio error stack: [2018-01-24T17:04:12.846021Z] [2018-01-24T17:04:12.847057Z] tests/statistics [2018-01-24T17:04:12.847098Z] [2018-01-24T17:04:12.847137Z] Running 4 test cases... [2018-01-24T17:04:12.847150Z] [2018-01-24T17:04:12.847240Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.847381Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.847460Z] that was used when compiling the application program: [2018-01-24T17:04:12.847529Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.847597Z] Version included by the application program = 5 [2018-01-24T17:04:12.847610Z] [2018-01-24T17:04:12.847698Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.847751Z] with the CFITSIO library. [2018-01-24T17:04:12.848048Z] unknown location:0: fatal error: in "StatisticsTestImages": lsst::afw::fits::FitsError: cfitsio error: could not open the named file (104) : Opening file '/Users/wmwv/lsstsw/stack/DarwinX86/afwdata/14.0+2/Statistics/v1_i1_g_m400_s20_f.fits' with mode 'r' [2018-01-24T17:04:12.848095Z] cfitsio error stack: [2018-01-24T17:04:12.848107Z] [2018-01-24T17:04:12.848210Z] tests/statistics.cc:241: last checkpoint: "StatisticsTestImages" entry. [2018-01-24T17:04:12.848223Z] [2018-01-24T17:04:12.848299Z] *** 1 failure is detected in the test module "Statistics" [2018-01-24T17:04:12.849383Z] tests/test_fitsTables [2018-01-24T17:04:12.849414Z] [2018-01-24T17:04:12.849454Z] Running 2 test cases... [2018-01-24T17:04:12.849467Z] [2018-01-24T17:04:12.849561Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.849661Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.849733Z] that was used when compiling the application program: [2018-01-24T17:04:12.849802Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.849871Z] Version included by the application program = 5 [2018-01-24T17:04:12.849885Z] [2018-01-24T17:04:12.849973Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.850014Z] with the CFITSIO library. [2018-01-24T17:04:12.850243Z] unknown location:0: fatal error: in "testFits": lsst::afw::fits::FitsError: cfitsio error: could not open the named file (104) : Opening file 'tests/data/testTable.fits' with mode 'r' [2018-01-24T17:04:12.850279Z] cfitsio error stack: [2018-01-24T17:04:12.850292Z] [2018-01-24T17:04:12.850352Z] tests/test_fitsTables.cc:117: last checkpoint [2018-01-24T17:04:12.850365Z] [2018-01-24T17:04:12.850441Z] *** 1 failure is detected in the test module "table - fits" [2018-01-24T17:04:12.851599Z] tests/test_tableArchives [2018-01-24T17:04:12.851627Z] [2018-01-24T17:04:12.851669Z] Running 15 test cases... [2018-01-24T17:04:12.851817Z] -------------------------------------------------------------------------------------- [2018-01-24T17:04:12.851925Z] The following warning is expected, and is an indication the test has passed. [2018-01-24T17:04:12.852028Z] -------------------------------------------------------------------------------------- [2018-01-24T17:04:12.852040Z] [2018-01-24T17:04:12.852138Z] ERROR: Mismatch in the CFITSIO_SONAME value in the fitsio.h include file [2018-01-24T17:04:12.852241Z] that was used to build the CFITSIO library, and the value in the include file [2018-01-24T17:04:12.852308Z] that was used when compiling the application program: [2018-01-24T17:04:12.852371Z] Version used to build the CFITSIO library = 2 [2018-01-24T17:04:12.852435Z] Version included by the application program = 5 [2018-01-24T17:04:12.852446Z] [2018-01-24T17:04:12.852528Z] Fix this by recompiling and then relinking this application program [2018-01-24T17:04:12.852566Z] with the CFITSIO library. [2018-01-24T17:04:12.852821Z] unknown location:0: fatal error: in "ArchiveImporter": lsst::afw::fits::FitsError: cfitsio error: could not open the named file (104) : Opening file '/Volumes/PS1/lsstsw/build/afw/tests/data/archiveImportTest.fits' with mode 'r' [2018-01-24T17:04:12.852855Z] cfitsio error stack: [2018-01-24T17:04:12.852867Z] [2018-01-24T17:04:12.852981Z] tests/test_tableArchives.cc:683: last checkpoint: "ArchiveImporter" entry. [2018-01-24T17:04:12.852993Z] [2018-01-24T17:04:12.853089Z] *** 1 failure is detected in the test module "table - archives" [2018-01-24T17:04:12.853132Z] The following tests failed: [2018-01-24T17:04:12.854785Z] /Volumes/PS1/lsstsw/build/afw/tests/.tests/background.failed [2018-01-24T17:04:12.854874Z] /Volumes/PS1/lsstsw/build/afw/tests/.tests/maskedImage1.failed [2018-01-24T17:04:12.854954Z] /Volumes/PS1/lsstsw/build/afw/tests/.tests/pytest-afw.xml.failed [2018-01-24T17:04:12.855027Z] /Volumes/PS1/lsstsw/build/afw/tests/.tests/ramFitsIO.failed [2018-01-24T17:04:12.855101Z] /Volumes/PS1/lsstsw/build/afw/tests/.tests/statistics.failed [2018-01-24T17:04:12.855180Z] /Volumes/PS1/lsstsw/build/afw/tests/.tests/test_fitsTables.failed [2018-01-24T17:04:12.855262Z] /Volumes/PS1/lsstsw/build/afw/tests/.tests/test_tableArchives.failed [2018-01-24T17:04:12.855303Z] 7 tests failed [2018-01-24T17:04:12.856201Z] scons: *** [checkTestStatus] Error 1 [2018-01-24T17:04:12.860104Z] scons: building terminated because of errors.