=============================================================================================== test session starts ===============================================================================================
platform linux -- Python 3.6.2, pytest-3.2.0, py-1.4.34, pluggy-0.4.0
rootdir: /home/chiba/Research/project237/my_packages/meas_extensions_shapeHSM, inifile:
plugins: session2file-0.1.9, forked-0.2, xdist-1.20.1, flake8-0.9.1

collecting 0 items
collecting 4 items
collecting 6 items
collecting 6 items

collected 6 items 
run-last-failure: rerun previous 3 failures

tests/testHsm.py FFF

------------------------------------ generated xml file: /home/chiba/Research/project237/my_packages/meas_extensions_shapeHSM/tests/.tests/pytest-meas_extensions_shapeHSM.xml ------------------------------------
==================================================================================================== FAILURES =====================================================================================================
___________________________________________________________________________________________ ShapeTestCase.testHsmShape ____________________________________________________________________________________________

self = <testHsm.ShapeTestCase testMethod=testHsmShape>

scons opt=3    def testHsmShape(self):
        """Test that we can instantiate and play with a measureShape"""
    
        nFail = 0
        msg = ""
    
        for (algNum, algName), (i, imageid) in itertools.product(enumerate(correction_methods),
                                                                 enumerate(file_indices)):
            algorithmName = "ext_shapeHSM_HsmShape" + algName[0:1].upper() + algName[1:].lower()
    
>           source = self.runMeasurement(algorithmName, imageid, x_centroid[i], y_centroid[i], sky_var[i])

tests/testHsm.py:240: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = <testHsm.ShapeTestCase testMethod=testHsmShape>, algorithmName = 'ext_shapeHSM_HsmShapeKsb', imageid = 0, x = 35.888, y = 19.845, v = 35.01188

    def runMeasurement(self, algorithmName, imageid, x, y, v):
        """Run the measurement algorithm on an image"""
        # load the test image
        imgFile = os.path.join(self.dataDir, "image.%d.fits" % imageid)
        img = afwImage.ImageF(imgFile)
        img -= self.bkgd
        nx, ny = img.getWidth(), img.getHeight()
        msk = afwImage.Mask(afwGeom.Extent2I(nx, ny), 0x0)
        var = afwImage.ImageF(afwGeom.Extent2I(nx, ny), v)
        mimg = afwImage.MaskedImageF(img, msk, var)
        msk.getArray()[:] = np.where(np.fabs(img.getArray()) < 1.0e-8, msk.getPlaneBitMask("BAD"), 0)
    
        # Put it in a bigger image, in case it matters
        big = afwImage.MaskedImageF(self.offset + mimg.getDimensions())
        big.getImage().set(0)
        big.getMask().set(0)
        big.getVariance().set(v)
        subBig = afwImage.MaskedImageF(big, afwGeom.Box2I(big.getXY0() + self.offset, mimg.getDimensions()))
        subBig <<= mimg
        mimg = big
        mimg.setXY0(self.xy0)
    
        exposure = afwImage.makeExposure(mimg)
        cdMatrix = np.array([1.0/(2.53*3600.0), 0.0, 0.0, 1.0/(2.53*3600.0)])
        cdMatrix.shape = (2, 2)
        exposure.setWcs(afwGeom.makeSkyWcs(crpix=afwGeom.Point2D(1.0, 1.0),
                                           crval=afwGeom.SpherePoint(0, 0, afwGeom.degrees),
>                                          cdMatrix=cdMatrix))
E       TypeError: makeSkyWcs(): incompatible function arguments. The following argument types are supported:
E           1. (crpix: lsst.afw.geom.coordinates.coordinates.Point2D, crval: lsst::afw::coord::IcrsCoord, cdMatrix: Eigen::Matrix<double, 2, 2, 0, 2, 2>, projection: str='TAN') -> lsst::afw::geom::SkyWcs
E           2. (metadata: lsst.daf.base.propertyContainer.propertySet.PropertySet, strip: bool=False) -> lsst::afw::geom::SkyWcs
E       
E       Invoked with: kwargs: crpix=Point2D(1, 1), crval=SpherePoint(0.0*afwGeom.degrees, 0.0*afwGeom.degrees), cdMatrix=array([[ 0.00010979,  0.        ],
E              [ 0.        ,  0.00010979]])

tests/testHsm.py:201: TypeError
_______________________________________________________________________________________ ShapeTestCase.testHsmSourceMoments ________________________________________________________________________________________

self = <testHsm.ShapeTestCase testMethod=testHsmSourceMoments>

    def testHsmSourceMoments(self):
        for (i, imageid) in enumerate(file_indices):
            source = self.runMeasurement("ext_shapeHSM_HsmSourceMoments", imageid,
>                                        x_centroid[i], y_centroid[i], sky_var[i])

tests/testHsm.py:291: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = <testHsm.ShapeTestCase testMethod=testHsmSourceMoments>, algorithmName = 'ext_shapeHSM_HsmSourceMoments', imageid = 0, x = 35.888, y = 19.845, v = 35.01188

    def runMeasurement(self, algorithmName, imageid, x, y, v):
        """Run the measurement algorithm on an image"""
        # load the test image
        imgFile = os.path.join(self.dataDir, "image.%d.fits" % imageid)
        img = afwImage.ImageF(imgFile)
        img -= self.bkgd
        nx, ny = img.getWidth(), img.getHeight()
        msk = afwImage.Mask(afwGeom.Extent2I(nx, ny), 0x0)
        var = afwImage.ImageF(afwGeom.Extent2I(nx, ny), v)
        mimg = afwImage.MaskedImageF(img, msk, var)
        mskscons opt=3.getArray()[:] = np.where(np.fabs(img.getArray()) < 1.0e-8, msk.getPlaneBitMask("BAD"), 0)
    
        # Put it in a bigger image, in case it matters
        big = afwImage.MaskedImageF(self.offset + mimg.getDimensions())
        big.getImage().set(0)
        big.getMask().set(0)
        big.getVariance().set(v)
        subBig = afwImage.MaskedImageF(big, afwGeom.Box2I(big.getXY0() + self.offset, mimg.getDimensions()))
        subBig <<= mimg
        mimg = big
        mimg.setXY0(self.xy0)
    
        exposure = afwImage.makeExposure(mimg)
        cdMatrix = np.array([1.0/(2.53*3600.0), 0.0, 0.0, 1.0/(2.53*3600.0)])
        cdMatrix.shape = (2, 2)
        exposure.setWcs(afwGeom.makeSkyWcs(crpix=afwGeom.Point2D(1.0, 1.0),
                                           crval=afwGeom.SpherePoint(0, 0, afwGeom.degrees),
>                                          cdMatrix=cdMatrix))
E       TypeError: makeSkyWcs(): incompatible function arguments. The following argument types are supported:
E           1. (crpix: lsst.afw.geom.coordinates.coordinates.Point2D, crval: lsst::afw::coord::IcrsCoord, cdMatrix: Eigen::Matrix<double, 2, 2, 0, 2, 2>, projection: str='TAN') -> lsst::afw::geom::SkyWcs
E           2. (metadata: lsst.daf.base.propertyContainer.propertySet.PropertySet, strip: bool=False) -> lsst::afw::geom::SkyWcs
E       
E       Invoked with: kwargs: crpix=Point2D(1, 1), crval=SpherePoint(0.0*afwGeom.degrees, 0.0*afwGeom.degrees), cdMatrix=array([[ 0.00010979,  0.        ],
E              [ 0.        ,  0.00010979]])

tests/testHsm.py:201: TypeError
_____________________________________________________________________________________ ShapeTestCase.testHsmSourceMomentsRound _____________________________________________________________________________________

self = <testHsm.ShapeTestCase testMethod=testHsmSourceMomentsRound>

    def testHsmSourceMomentsRound(self):
        for (i, imageid) in enumerate(file_indices):
            source = self.runMeasurement("ext_shapeHSM_HsmSourceMomentsRound", imageid,
>                                        x_centroid[i], y_centroid[i], sky_var[i])

tests/testHsm.py:313: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = <testHsm.ShapeTestCase testMethod=testHsmSourceMomentsRound>, algorithmName = 'ext_shapeHSM_HsmSourceMomentsRound', imageid = 0, x = 35.888, y = 19.845, v = 35.01188

    def runMeasurement(self, algorithmName, imageid, x, y, v):
        """Run the measurement algorithm on an image"""
        # load the test image
        imgFile = os.path.join(self.dataDir, "image.%d.fits" % imageid)
        img = afwImage.ImageF(imgFile)
        img -= self.bkgd
        nx, ny = img.getWidth(), img.getHeight()
        msk = afwImage.Mask(afwGeom.Extent2I(nx, ny), 0x0)
        var = afwImage.ImageF(afwGeom.Extent2I(nx, ny), v)
        mimg = afwImage.MaskedImageF(img, msk, var)
        msk.getArray()[:] = np.where(np.fabs(img.getArray()) < 1.0e-8, msk.getPlaneBitMask("BAD"), 0)
    
        # Put it in a bigger image, in case it matters
        big = afwImage.MaskedImageF(self.offset + mimg.getDimensions())
        big.getImage().set(0)
        big.getMask().set(0)
        big.getVariance().set(v)
        subBig = afwImage.MaskedImageF(big, afwGeom.Box2I(big.getXY0() + self.offset, mimg.getDimensions()))
        subBig <<= mimg
        mimg = big
        mimg.setXY0(self.xy0)
    
        exposure = afwImage.makeExposure(mimg)
        cdMatrix = np.array([1.0/(2.53*3600.0), 0.0, 0.0, 1.0/(2.53*3600.0)])
        cdMatrix.shape = (2, 2)
        exposure.setWcs(afwGeom.makeSkyWcs(crpix=afwGeom.Point2D(1.0, 1.0),
                                           crval=afwGeom.SpherePoint(0, 0, afwGeom.degrees),
>                                          cdMatrix=cdMatrix))
E       TypeError: makeSkyWcs(): incompatible function arguments. The following argument types are supported:
E           1. (crpix: lsst.afw.geom.coordinates.coordinates.Point2D, crval: lsst::afw::coord::IcrsCoord, cdMatrix: Eigen::Matrix<double, 2, 2, 0, 2, 2>, projection: str='TAN') -> lsst::afw::geom::SkyWcs
E           2. (metadata: lsst.daf.base.propertyContainer.propertySet.PropertySet, strip: bool=False) -> lsst::afw::geom::SkyWcs
E       
E       Invoked with: kwargs: crpix=Point2D(1, 1), crval=SpherePoint(0.0*afwGeom.degrees, 0.0*afwGeom.degrees), cdMatrix=array([[ 0.00010979,  0.        ],
E              [ 0.        ,  0.00010979]])

tests/testHsm.py:201: TypeError
=============================================================================================== 3 tests deselected ================================================================================================
===================================================================================== 3 failed, 3 deselected in 1.19 seconds ======================================================================================
Global pytest run: failed
scons: Nothing to be done for `doc'.
Failed test output:
Global pytest output is in /home/chiba/Research/project237/my_packages/meas_extensions_shapeHSM/tests/.tests/pytest-meas_extensions_shapeHSM.xml.failed
The following tests failed:
/home/chiba/Research/project237/my_packages/meas_extensions_shapeHSM/tests/.tests/pytest-meas_extensions_shapeHSM.xml.failed
1 tests failed
scons: *** [checkTestStatus] Error 1
scons: building terminated because of errors.