Bad termination from running singleFrameDriver.py via hscPipe v7.5


(Ying-Tung Chen) #1

Hi,

I ran the singleFrameDriver.py after I use ingestCalibs.py to create calibs as Paul’s suggestion. The process looks OK in the begining, but it was terminated by EXIT CODE: 139. It doesn’t look like a problem caused by calibration setting. Here is the full command I executed:
singleFrameDriver.py $WORKDIR --rerun $RERUNFRAME --calib=$WORKDIR/CALIB/ --id visit=174618 --config processCcd.isr.doBias=False processCcd.isr.doDark=False processCcd.isr.doFringe=False processCcd.isr.doAttachTransmissionCurve=False processCcd.isr.doBrighterFatter=False --job reduceFrames.g.JTL503.hp5 --cores $RCHP5 --clobber-config

This is full log that display on the screen:

root INFO: Loading config overrride file ‘/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/obs_subaru/7.2-hsc/config/singleFrameDriver.py’
root INFO: Loading config overrride file ‘/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/obs_subaru/7.2-hsc/config/hsc/singleFrameDriver.py’
CameraMapper INFO: Loading exposure registry from /array/users/ytchen/processed/2019/201904-pi-hp75/registry.sqlite3
CameraMapper INFO: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
root INFO: Loading config overrride file ‘/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/obs_subaru/7.2-hsc/config/singleFrameDriver.py’
root INFO: Loading config overrride file ‘/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/obs_subaru/7.2-hsc/config/hsc/singleFrameDriver.py’
CameraMapper INFO: Loading exposure registry from /array/users/ytchen/processed/2019/201904-pi-hp75/registry.sqlite3
CameraMapper INFO: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
root INFO: Running: -c /array/users/ytchen/processed/2019/201904-pi-hp75 --rerun JT-201904-pi-hp75 --calib=/array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/ --id visit=174618 --config processCcd.isr.doBias=False processCcd.isr.doDark=False processCcd.isr.doFringe=False processCcd.isr.doAttachTransmissionCurve=False processCcd.isr.doBrighterFatter=False --clobber-config --noExit
root INFO: Processing 112 targets with a pool of 4 processes…
139623 INFO 2019-06-11T13:38:51.188+0800 CameraMapper: Loading exposure registry from /array/users/ytchen/processed/2019/201904-pi-hp75/registry.sqlite3
139623 INFO 2019-06-11T13:38:51.190+0800 CameraMapper: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
139622 INFO 2019-06-11T13:38:51.197+0800 CameraMapper: Loading exposure registry from /array/users/ytchen/processed/2019/201904-pi-hp75/registry.sqlite3
139622 INFO 2019-06-11T13:38:51.199+0800 CameraMapper: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
139621 INFO 2019-06-11T13:38:51.205+0800 CameraMapper: Loading exposure registry from /array/users/ytchen/processed/2019/201904-pi-hp75/registry.sqlite3
139621 INFO 2019-06-11T13:38:51.206+0800 CameraMapper: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
139623 INFO 2019-06-11T13:38:52.268+0800 CameraMapper: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
139622 INFO 2019-06-11T13:38:52.299+0800 CameraMapper: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
139621 INFO 2019-06-11T13:38:52.301+0800 CameraMapper: Loading calib registry from /array/users/ytchen/processed/2019/201904-pi-hp75/CALIB/calibRegistry.sqlite3
139622 INFO 2019-06-11T13:38:53.166+0800 singleFrameDriver: ichiro.asiaa.sinica.edu.tw:139622: Start processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 1, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139622 INFO 2019-06-11T13:38:53.166+0800 singleFrameDriver.processCcd: Processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 1, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139622 INFO 2019-06-11T13:38:53.167+0800 singleFrameDriver.processCcd.isr: Performing ISR on sensor {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 1, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139621 INFO 2019-06-11T13:38:53.174+0800 singleFrameDriver: ichiro.asiaa.sinica.edu.tw:139621: Start processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 0, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139621 INFO 2019-06-11T13:38:53.175+0800 singleFrameDriver.processCcd: Processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 0, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139621 INFO 2019-06-11T13:38:53.175+0800 singleFrameDriver.processCcd.isr: Performing ISR on sensor {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 0, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139623 INFO 2019-06-11T13:38:53.206+0800 singleFrameDriver: ichiro.asiaa.sinica.edu.tw:139623: Start processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 2, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139623 INFO 2019-06-11T13:38:53.206+0800 singleFrameDriver.processCcd: Processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 2, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139623 INFO 2019-06-11T13:38:53.206+0800 singleFrameDriver.processCcd.isr: Performing ISR on sensor {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 2, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139621 INFO 2019-06-11T13:38:55.278+0800 singleFrameDriver.processCcd.isr: Converting exposure to floating point values
139621 WARN 2019-06-11T13:38:55.450+0800 singleFrameDriver.processCcd.isr: Amplifier 1 is bad.
139622 INFO 2019-06-11T13:38:55.461+0800 singleFrameDriver.processCcd.isr: Converting exposure to floating point values
139623 INFO 2019-06-11T13:38:55.495+0800 singleFrameDriver.processCcd.isr: Converting exposure to floating point values
139621 INFO 2019-06-11T13:38:55.552+0800 singleFrameDriver.processCcd.isr: Assembling CCD from amplifiers
139622 INFO 2019-06-11T13:38:55.733+0800 singleFrameDriver.processCcd.isr: Assembling CCD from amplifiers
139623 INFO 2019-06-11T13:38:55.783+0800 singleFrameDriver.processCcd.isr: Assembling CCD from amplifiers
139621 INFO 2019-06-11T13:38:56.102+0800 singleFrameDriver.processCcd.isr: Applying linearizer.
139621 INFO 2019-06-11T13:38:56.138+0800 singleFrameDriver.processCcd.isr: Applying crosstalk correction.
139621 INFO 2019-06-11T13:38:56.138+0800 singleFrameDriver.processCcd.isr.crosstalk: Applying crosstalk correction/Subaru
139622 INFO 2019-06-11T13:38:56.228+0800 singleFrameDriver.processCcd.isr: Applying linearizer.
139622 INFO 2019-06-11T13:38:56.255+0800 singleFrameDriver.processCcd.isr: Applying crosstalk correction.
139622 INFO 2019-06-11T13:38:56.255+0800 singleFrameDriver.processCcd.isr.crosstalk: Applying crosstalk correction/Subaru
139623 INFO 2019-06-11T13:38:56.307+0800 singleFrameDriver.processCcd.isr: Applying linearizer.
139623 INFO 2019-06-11T13:38:56.336+0800 singleFrameDriver.processCcd.isr: Applying crosstalk correction.
139623 INFO 2019-06-11T13:38:56.336+0800 singleFrameDriver.processCcd.isr.crosstalk: Applying crosstalk correction/Subaru
139621 INFO 2019-06-11T13:38:57.049+0800 singleFrameDriver.processCcd.isr: Widening saturation trails.
139621 INFO 2019-06-11T13:38:57.065+0800 singleFrameDriver.processCcd.isr: Applying flat correction.
139621 INFO 2019-06-11T13:38:57.121+0800 singleFrameDriver.processCcd.isr: Masking and interpolating defects.
139622 INFO 2019-06-11T13:38:57.133+0800 singleFrameDriver.processCcd.isr: Widening saturation trails.
139622 INFO 2019-06-11T13:38:57.159+0800 singleFrameDriver.processCcd.isr: Applying flat correction.
139623 INFO 2019-06-11T13:38:57.201+0800 singleFrameDriver.processCcd.isr: Widening saturation trails.
139622 INFO 2019-06-11T13:38:57.214+0800 singleFrameDriver.processCcd.isr: Masking and interpolating defects.
139623 INFO 2019-06-11T13:38:57.215+0800 singleFrameDriver.processCcd.isr: Applying flat correction.
139623 INFO 2019-06-11T13:38:57.264+0800 singleFrameDriver.processCcd.isr: Masking and interpolating defects.
139621 INFO 2019-06-11T13:38:57.516+0800 singleFrameDriver.processCcd.isr: Interpolating saturated pixels.
139622 INFO 2019-06-11T13:38:57.676+0800 singleFrameDriver.processCcd.isr: Interpolating saturated pixels.
139623 INFO 2019-06-11T13:38:57.687+0800 singleFrameDriver.processCcd.isr: Interpolating saturated pixels.
139621 INFO 2019-06-11T13:38:57.968+0800 singleFrameDriver.processCcd.isr: Masking and interpolating NAN value pixels.
139623 INFO 2019-06-11T13:38:58.136+0800 singleFrameDriver.processCcd.isr: Masking and interpolating NAN value pixels.
139622 INFO 2019-06-11T13:38:58.144+0800 singleFrameDriver.processCcd.isr: Masking and interpolating NAN value pixels.
139621 INFO 2019-06-11T13:38:58.256+0800 singleFrameDriver.processCcd.isr: Setting rough magnitude zero point: 32.692803
139621 INFO 2019-06-11T13:38:58.256+0800 singleFrameDriver.processCcd.isr: Constructing Vignette polygon.
139621 INFO 2019-06-11T13:38:58.279+0800 singleFrameDriver.processCcd.isr: Adding a distortion model to the WCS.
139621 INFO 2019-06-11T13:38:58.281+0800 singleFrameDriver.processCcd.isr: Measuring background level:
139623 INFO 2019-06-11T13:38:58.460+0800 singleFrameDriver.processCcd.isr: Setting rough magnitude zero point: 32.692803
139623 INFO 2019-06-11T13:38:58.460+0800 singleFrameDriver.processCcd.isr: Constructing Vignette polygon.
139623 INFO 2019-06-11T13:38:58.461+0800 singleFrameDriver.processCcd.isr: Adding a distortion model to the WCS.
139623 INFO 2019-06-11T13:38:58.464+0800 singleFrameDriver.processCcd.isr: Measuring background level:
139622 INFO 2019-06-11T13:38:58.472+0800 singleFrameDriver.processCcd.isr: Setting rough magnitude zero point: 32.692803
139622 INFO 2019-06-11T13:38:58.472+0800 singleFrameDriver.processCcd.isr: Constructing Vignette polygon.
139622 INFO 2019-06-11T13:38:58.473+0800 singleFrameDriver.processCcd.isr: Adding a distortion model to the WCS.
139622 INFO 2019-06-11T13:38:58.476+0800 singleFrameDriver.processCcd.isr: Measuring background level:
139621 INFO 2019-06-11T13:38:58.585+0800 singleFrameDriver.processCcd.isr: Flattened sky level: 305.868256 +/- 10.445378
139623 INFO 2019-06-11T13:38:58.808+0800 singleFrameDriver.processCcd.isr: Flattened sky level: 304.669098 +/- 10.142621
139622 INFO 2019-06-11T13:38:58.831+0800 singleFrameDriver.processCcd.isr: Flattened sky level: 306.349213 +/- 9.998964
139621 INFO 2019-06-11T13:38:58.852+0800 singleFrameDriver.processCcd.isr: Measuring sky levels in 8x16 grids: 306.108966
139621 INFO 2019-06-11T13:38:58.852+0800 singleFrameDriver.processCcd.isr: Sky flatness in 8x16 grids - pp: 0.017215 rms: 0.003908
139623 INFO 2019-06-11T13:38:59.146+0800 singleFrameDriver.processCcd.isr: Measuring sky levels in 8x16 grids: 304.970223
139623 INFO 2019-06-11T13:38:59.146+0800 singleFrameDriver.processCcd.isr: Sky flatness in 8x16 grids - pp: 0.034628 rms: 0.004833
139622 INFO 2019-06-11T13:38:59.172+0800 singleFrameDriver.processCcd.isr: Measuring sky levels in 8x16 grids: 306.399288
139622 INFO 2019-06-11T13:38:59.172+0800 singleFrameDriver.processCcd.isr: Sky flatness in 8x16 grids - pp: 0.023681 rms: 0.004674
139621 INFO 2019-06-11T13:38:59.186+0800 singleFrameDriver.processCcd.charImage: Processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 0, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139623 INFO 2019-06-11T13:38:59.498+0800 singleFrameDriver.processCcd.charImage: Processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 2, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139622 INFO 2019-06-11T13:38:59.525+0800 singleFrameDriver.processCcd.charImage: Processing {‘visit’: 174618, ‘field’: ‘JTL503’, ‘dateObs’: ‘2019-04-10’, ‘pointing’: 2656, ‘filter’: ‘HSC-G’, ‘ccd’: 1, ‘taiObs’: ‘2019-04-10’, ‘expTime’: 30.0}
139621 WARN 2019-06-11T13:38:59.694+0800 singleFrameDriver.processCcd.charImage: Source catalog detected and measured with placeholder or default PSF
139621 INFO 2019-06-11T13:39:00.075+0800 singleFrameDriver.processCcd.charImage.repair: Identified 42 cosmic rays.
139623 WARN 2019-06-11T13:39:00.090+0800 singleFrameDriver.processCcd.charImage: Source catalog detected and measured with placeholder or default PSF
139622 WARN 2019-06-11T13:39:00.135+0800 singleFrameDriver.processCcd.charImage: Source catalog detected and measured with placeholder or default PSF
139623 INFO 2019-06-11T13:39:00.478+0800 singleFrameDriver.processCcd.charImage.repair: Identified 69 cosmic rays.
139622 INFO 2019-06-11T13:39:00.496+0800 singleFrameDriver.processCcd.charImage.repair: Identified 78 cosmic rays.
139621 INFO 2019-06-11T13:39:01.319+0800 singleFrameDriver.processCcd.charImage.detection: Detected 129 positive peaks in 35 footprints and 0 negative peaks in 0 footprints to 50 sigma
139621 INFO 2019-06-11T13:39:01.565+0800 singleFrameDriver.processCcd.charImage.detection: Resubtracting the background after object detection
139622 INFO 2019-06-11T13:39:01.799+0800 singleFrameDriver.processCcd.charImage.detection: Detected 341 positive peaks in 54 footprints and 0 negative peaks in 0 footprints to 50 sigma
139623 INFO 2019-06-11T13:39:01.855+0800 singleFrameDriver.processCcd.charImage.detection: Detected 256 positive peaks in 58 footprints and 0 negative peaks in 0 footprints to 50 sigma
139622 INFO 2019-06-11T13:39:02.133+0800 singleFrameDriver.processCcd.charImage.detection: Resubtracting the background after object detection
139623 INFO 2019-06-11T13:39:02.190+0800 singleFrameDriver.processCcd.charImage.detection: Resubtracting the background after object detection
139621 INFO 2019-06-11T13:39:02.348+0800 singleFrameDriver.processCcd.charImage.measurement: Measuring 35 sources (35 parents, 0 children)
Caught signal 11, backtrace follows:
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/utils/7.0-hsc/lib/libutils.so(+0x14bd4) [0x7f843fbaabd4]
/lib64/libc.so.6(+0x35990) [0x7f845611d990]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/afw/7.2-hsc/lib/libafw.so(lsst::afw::table::AliasMap::_apply(std::__cxx11::basic_string<char, std::char_traits, std::allocator >&) const+0x78) [0x7f84336a7958]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/afw/7.2-hsc/lib/libafw.so(lsst::afw::table::SchemaItemlsst::afw::table::Flag lsst::afw::table::Schema::findlsst::afw::table::Flag(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&) const+0x3c) [0x7f84336f986c]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/lib/libmeas_base.so(lsst::meas::base::SdssCentroidAlgorithm::measure(lsst::afw::table::SourceRecord&, lsst::afw::image::Exposure<float, int, float> const&) const+0xe3) [0x7f8409a5e803]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/python/lsst/meas/base/sdssCentroid.so(+0x1f9aed) [0x7f83e9017aed]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/python/lsst/meas/base/sdssCentroid.so(+0x1fb897) [0x7f83e9019897]
python((null)+0x264) [0x557bb7abde24]
python(_PyMethodDef_RawFastCallKeywords+0x264) [0x557bb7abde24]
python((null)+0x21) [0x557bb7abdf41]
python(_PyCFunction_FastCallKeywords+0x21) [0x557bb7abdf41]
python((null)+0x5266) [0x557bb7b18d26]
python(_PyEval_EvalFrameDefault+0x5266) [0x557bb7b18d26]
python((null)+0x10b) [0x557bb7a5a0eb]
python(_PyFunction_FastCallDict+0x10b) [0x557bb7a5a0eb]
python((null)+0x63) [0x557bb7a71473]
python(_PyObject_Call_Prepend+0x63) [0x557bb7a71473]
python(PyObject_Call+0x6e) [0x557bb7a6619e]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python((null)+0x1d4) [0x557bb7a5a1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x557bb7a5a1b4]
python((null)+0x63) [0x557bb7a71473]
python(_PyObject_Call_Prepend+0x63) [0x557bb7a71473]
python(PyObject_Call+0x6e) [0x557bb7a6619e]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x14e1) [0x557bb7b14fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x557bb7b14fa1]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python((null)+0x325) [0x557bb7abd0f5]
python(_PyFunction_FastCallKeywords+0x325) [0x557bb7abd0f5]
python((null)+0x530) [0x557bb7b13ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x557bb7b13ff0]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python((null)+0x3dc) [0x557bb7a5a3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x557bb7a5a3bc]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x14e1) [0x557bb7b14fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x557bb7b14fa1]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python((null)+0x3dc) [0x557bb7a5a3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x557bb7a5a3bc]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x14e1) [0x557bb7b14fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x557bb7b14fa1]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python((null)+0x3dc) [0x557bb7a5a3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x557bb7a5a3bc]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x14e1) [0x557bb7b14fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x557bb7b14fa1]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python((null)+0x3dc) [0x557bb7a5a3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x557bb7a5a3bc]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x14e1) [0x557bb7b14fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x557bb7b14fa1]
python((null)+0x10b) [0x557bb7a5a0eb]
python(_PyFunction_FastCallDict+0x10b) [0x557bb7a5a0eb]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x530) [0x557bb7b13ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x557bb7b13ff0]
python((null)+0x10b) [0x557bb7a5a0eb]
python(_PyFunction_FastCallDict+0x10b) [0x557bb7a5a0eb]
python((null)+0x63) [0x557bb7a71473]
python(_PyObject_Call_Prepend+0x63) [0x557bb7a71473]
python(PyObject_Call+0x6e) [0x557bb7a6619e]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0xfb) [0x557bb7abcecb]
python(_PyFunction_FastCallKeywords+0xfb) [0x557bb7abcecb]
python((null)+0x530) [0x557bb7b13ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x557bb7b13ff0]
python((null)+0xfb) [0x557bb7abcecb]
python(_PyFunction_FastCallKeywords+0xfb) [0x557bb7abcecb]
python((null)+0x4aa1) [0x557bb7b18561]
python(_PyEval_EvalFrameDefault+0x4aa1) [0x557bb7b18561]
python((null)+0x10b) [0x557bb7a5a0eb]
python(_PyFunction_FastCallDict+0x10b) [0x557bb7a5a0eb]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x1d4) [0x557bb7a5a1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x557bb7a5a1b4]
python((null)+0x63) [0x557bb7a71473]
python(_PyObject_Call_Prepend+0x63) [0x557bb7a71473]
python(+0x17194a) [0x557bb7ab594a]
python(PyObject_Call+0x6e) [0x557bb7a6619e]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0xab9) [0x557bb7a59899]
python(_PyEval_EvalCodeWithName+0xab9) [0x557bb7a59899]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x6e6) [0x557bb7b141a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x557bb7b141a6]
python((null)+0xab9) [0x557bb7a59899]
python(_PyEval_EvalCodeWithName+0xab9) [0x557bb7a59899]
python((null)+0x1d4) [0x557bb7a5a1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x557bb7a5a1b4]
python((null)+0x63) [0x557bb7a71473]
python(_PyObject_Call_Prepend+0x63) [0x557bb7a71473]
python(PyObject_Call+0x6e) [0x557bb7a6619e]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python((null)+0x1d4) [0x557bb7a5a1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x557bb7a5a1b4]
python((null)+0x63) [0x557bb7a71473]
python(_PyObject_Call_Prepend+0x63) [0x557bb7a71473]
python(PyObject_Call+0x6e) [0x557bb7a6619e]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x10b) [0x557bb7a5a0eb]
python(_PyFunction_FastCallDict+0x10b) [0x557bb7a5a0eb]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x6e6) [0x557bb7b141a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x557bb7b141a6]
python((null)+0xab9) [0x557bb7a59899]
python(_PyEval_EvalCodeWithName+0xab9) [0x557bb7a59899]
python((null)+0x1d4) [0x557bb7a5a1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x557bb7a5a1b4]
python((null)+0x1f3f) [0x557bb7b159ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x557bb7b159ff]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x530) [0x557bb7b13ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x557bb7b13ff0]
python(+0x178d3b) [0x557bb7abcd3b]
python((null)+0x6e6) [0x557bb7b141a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x557bb7b141a6]
python((null)+0x5da) [0x557bb7a593ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x557bb7a593ba]
python((null)+0x387) [0x557bb7abd157]
python(_PyFunction_FastCallKeywords+0x387) [0x557bb7abd157]
python((null)+0x4aa1) [0x557bb7b18561]
python(_PyEval_EvalFrameDefault+0x4aa1) [0x557bb7b18561]
python((null)+0x2f9) [0x557bb7a590d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x557bb7a590d9]
python(PyEval_EvalCodeEx+0x44) [0x557bb7a59fa4]
python(PyEval_EvalCode+0x1c) [0x557bb7a59fcc]
python(+0x22f664) [0x557bb7b73664]
python(PyRun_StringFlags+0x7d) [0x557bb7b7e77d]
python(PyRun_SimpleStringFlags+0x3f) [0x557bb7b7e7df]
python(+0x23a8dd) [0x557bb7b7e8dd]
python((null)+0x3c) [0x557bb7b7ec4c]
python(_Py_UnixMain+0x3c) [0x557bb7b7ec4c]
/lib64/libc.so.6((null)+0xf1) [0x7f8456108401]
/lib64/libc.so.6(__libc_start_main+0xf1) [0x7f8456108401]
python(+0x1df982) [0x557bb7b23982]
139622 INFO 2019-06-11T13:39:02.664+0800 singleFrameDriver.processCcd.charImage.measurement: Measuring 54 sources (54 parents, 0 children)
Caught signal 11, backtrace follows:
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/utils/7.0-hsc/lib/libutils.so(+0x14bd4) [0x7f296f986bd4]
/lib64/libc.so.6(+0x35990) [0x7f2985ef9990]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/lib/libmeas_base.so(lsst::afw::table::SourceRecord::getCentroidFlag() const+0x5d) [0x7f293982078d]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/lib/libmeas_base.so(lsst::meas::base::SafeCentroidExtractor::operator()(lsst::afw::table::SourceRecord&, lsst::meas::base::FlagHandler const&) const+0x2a3) [0x7f293981ff53]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/lib/libmeas_base.so(lsst::meas::base::SdssCentroidAlgorithm::measure(lsst::afw::table::SourceRecord&, lsst::afw::image::Exposure<float, int, float> const&) const+0x48) [0x7f293983a768]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/python/lsst/meas/base/sdssCentroid.so(+0x1f9aed) [0x7f2918df3aed]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/python/lsst/meas/base/sdssCentroid.so(+0x1fb897) [0x7f2918df5897]
python((null)+0x264) [0x55b73a541e24]
python(_PyMethodDef_RawFastCallKeywords+0x264) [0x55b73a541e24]
python((null)+0x21) [0x55b73a541f41]
python(_PyCFunction_FastCallKeywords+0x21) [0x55b73a541f41]
python((null)+0x5266) [0x55b73a59cd26]
python(_PyEval_EvalFrameDefault+0x5266) [0x55b73a59cd26]
python((null)+0x10b) [0x55b73a4de0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b73a4de0eb]
python((null)+0x63) [0x55b73a4f5473]
python(_PyObject_Call_Prepend+0x63) [0x55b73a4f5473]
python(PyObject_Call+0x6e) [0x55b73a4ea19e]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python((null)+0x1d4) [0x55b73a4de1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b73a4de1b4]
python((null)+0x63) [0x55b73a4f5473]
python(_PyObject_Call_Prepend+0x63) [0x55b73a4f5473]
python(PyObject_Call+0x6e) [0x55b73a4ea19e]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x14e1) [0x55b73a598fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b73a598fa1]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python((null)+0x325) [0x55b73a5410f5]
python(_PyFunction_FastCallKeywords+0x325) [0x55b73a5410f5]
python((null)+0x530) [0x55b73a597ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x55b73a597ff0]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python((null)+0x3dc) [0x55b73a4de3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x55b73a4de3bc]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x14e1) [0x55b73a598fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b73a598fa1]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python((null)+0x3dc) [0x55b73a4de3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x55b73a4de3bc]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x14e1) [0x55b73a598fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b73a598fa1]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python((null)+0x3dc) [0x55b73a4de3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x55b73a4de3bc]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x14e1) [0x55b73a598fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b73a598fa1]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python((null)+0x3dc) [0x55b73a4de3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x55b73a4de3bc]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x14e1) [0x55b73a598fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b73a598fa1]
python((null)+0x10b) [0x55b73a4de0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b73a4de0eb]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x530) [0x55b73a597ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x55b73a597ff0]
python((null)+0x10b) [0x55b73a4de0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b73a4de0eb]
python((null)+0x63) [0x55b73a4f5473]
python(_PyObject_Call_Prepend+0x63) [0x55b73a4f5473]
python(PyObject_Call+0x6e) [0x55b73a4ea19e]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0xfb) [0x55b73a540ecb]
python(_PyFunction_FastCallKeywords+0xfb) [0x55b73a540ecb]
python((null)+0x530) [0x55b73a597ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x55b73a597ff0]
python((null)+0xfb) [0x55b73a540ecb]
python(_PyFunction_FastCallKeywords+0xfb) [0x55b73a540ecb]
python((null)+0x4aa1) [0x55b73a59c561]
python(_PyEval_EvalFrameDefault+0x4aa1) [0x55b73a59c561]
python((null)+0x10b) [0x55b73a4de0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b73a4de0eb]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x1d4) [0x55b73a4de1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b73a4de1b4]
python((null)+0x63) [0x55b73a4f5473]
python(_PyObject_Call_Prepend+0x63) [0x55b73a4f5473]
python(+0x17194a) [0x55b73a53994a]
python(PyObject_Call+0x6e) [0x55b73a4ea19e]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0xab9) [0x55b73a4dd899]
python(_PyEval_EvalCodeWithName+0xab9) [0x55b73a4dd899]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x6e6) [0x55b73a5981a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x55b73a5981a6]
python((null)+0xab9) [0x55b73a4dd899]
python(_PyEval_EvalCodeWithName+0xab9) [0x55b73a4dd899]
python((null)+0x1d4) [0x55b73a4de1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b73a4de1b4]
python((null)+0x63) [0x55b73a4f5473]
python(_PyObject_Call_Prepend+0x63) [0x55b73a4f5473]
python(PyObject_Call+0x6e) [0x55b73a4ea19e]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python((null)+0x1d4) [0x55b73a4de1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b73a4de1b4]
python((null)+0x63) [0x55b73a4f5473]
python(_PyObject_Call_Prepend+0x63) [0x55b73a4f5473]
python(PyObject_Call+0x6e) [0x55b73a4ea19e]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x10b) [0x55b73a4de0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b73a4de0eb]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x6e6) [0x55b73a5981a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x55b73a5981a6]
python((null)+0xab9) [0x55b73a4dd899]
python(_PyEval_EvalCodeWithName+0xab9) [0x55b73a4dd899]
python((null)+0x1d4) [0x55b73a4de1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b73a4de1b4]
python((null)+0x1f3f) [0x55b73a5999ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b73a5999ff]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x530) [0x55b73a597ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x55b73a597ff0]
python(+0x178d3b) [0x55b73a540d3b]
python((null)+0x6e6) [0x55b73a5981a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x55b73a5981a6]
python((null)+0x5da) [0x55b73a4dd3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b73a4dd3ba]
python((null)+0x387) [0x55b73a541157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b73a541157]
python((null)+0x4aa1) [0x55b73a59c561]
python(_PyEval_EvalFrameDefault+0x4aa1) [0x55b73a59c561]
python((null)+0x2f9) [0x55b73a4dd0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b73a4dd0d9]
python(PyEval_EvalCodeEx+0x44) [0x55b73a4ddfa4]
python(PyEval_EvalCode+0x1c) [0x55b73a4ddfcc]
python(+0x22f664) [0x55b73a5f7664]
python(PyRun_StringFlags+0x7d) [0x55b73a60277d]
python(PyRun_SimpleStringFlags+0x3f) [0x55b73a6027df]
python(+0x23a8dd) [0x55b73a6028dd]
python((null)+0x3c) [0x55b73a602c4c]
python(_Py_UnixMain+0x3c) [0x55b73a602c4c]
/lib64/libc.so.6((null)+0xf1) [0x7f2985ee4401]
/lib64/libc.so.6(__libc_start_main+0xf1) [0x7f2985ee4401]
python(+0x1df982) [0x55b73a5a7982]
139623 INFO 2019-06-11T13:39:02.697+0800 singleFrameDriver.processCcd.charImage.measurement: Measuring 58 sources (58 parents, 0 children)
Caught signal 11, backtrace follows:
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/utils/7.0-hsc/lib/libutils.so(+0x14bd4) [0x7f17e8ccbbd4]
/lib64/libc.so.6(+0x35990) [0x7f17ff23e990]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/afw/7.2-hsc/lib/libafw.so(lsst::afw::table::AliasMap::_apply(std::__cxx11::basic_string<char, std::char_traits, std::allocator >&) const+0x78) [0x7f17dc7c8958]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/afw/7.2-hsc/lib/libafw.so(lsst::afw::table::SchemaItemlsst::afw::table::Flag lsst::afw::table::Schema::findlsst::afw::table::Flag(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&) const+0x3c) [0x7f17dc81a86c]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/lib/libmeas_base.so(lsst::meas::base::SdssCentroidAlgorithm::measure(lsst::afw::table::SourceRecord&, lsst::afw::image::Exposure<float, int, float> const&) const+0xe3) [0x7f17b2b7f803]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/python/lsst/meas/base/sdssCentroid.so(+0x1f9aed) [0x7f1792138aed]
/opt/hscPipe7/stack/miniconda3-4.5.12-1172c30/Linux64/meas_base/7.0-hsc/python/lsst/meas/base/sdssCentroid.so(+0x1fb897) [0x7f179213a897]
python((null)+0x264) [0x55b06c52ee24]
python(_PyMethodDef_RawFastCallKeywords+0x264) [0x55b06c52ee24]
python((null)+0x21) [0x55b06c52ef41]
python(_PyCFunction_FastCallKeywords+0x21) [0x55b06c52ef41]
python((null)+0x5266) [0x55b06c589d26]
python(_PyEval_EvalFrameDefault+0x5266) [0x55b06c589d26]
python((null)+0x10b) [0x55b06c4cb0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b06c4cb0eb]
python((null)+0x63) [0x55b06c4e2473]
python(_PyObject_Call_Prepend+0x63) [0x55b06c4e2473]
python(PyObject_Call+0x6e) [0x55b06c4d719e]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python((null)+0x1d4) [0x55b06c4cb1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b06c4cb1b4]
python((null)+0x63) [0x55b06c4e2473]
python(_PyObject_Call_Prepend+0x63) [0x55b06c4e2473]
python(PyObject_Call+0x6e) [0x55b06c4d719e]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x14e1) [0x55b06c585fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b06c585fa1]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python((null)+0x325) [0x55b06c52e0f5]
python(_PyFunction_FastCallKeywords+0x325) [0x55b06c52e0f5]
python((null)+0x530) [0x55b06c584ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x55b06c584ff0]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python((null)+0x3dc) [0x55b06c4cb3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x55b06c4cb3bc]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x14e1) [0x55b06c585fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b06c585fa1]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python((null)+0x3dc) [0x55b06c4cb3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x55b06c4cb3bc]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x14e1) [0x55b06c585fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b06c585fa1]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python((null)+0x3dc) [0x55b06c4cb3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x55b06c4cb3bc]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x14e1) [0x55b06c585fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b06c585fa1]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python((null)+0x3dc) [0x55b06c4cb3bc]
python(_PyFunction_FastCallDict+0x3dc) [0x55b06c4cb3bc]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x14e1) [0x55b06c585fa1]
python(_PyEval_EvalFrameDefault+0x14e1) [0x55b06c585fa1]
python((null)+0x10b) [0x55b06c4cb0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b06c4cb0eb]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x530) [0x55b06c584ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x55b06c584ff0]
python((null)+0x10b) [0x55b06c4cb0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b06c4cb0eb]
python((null)+0x63) [0x55b06c4e2473]
python(_PyObject_Call_Prepend+0x63) [0x55b06c4e2473]
python(PyObject_Call+0x6e) [0x55b06c4d719e]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0xfb) [0x55b06c52decb]
python(_PyFunction_FastCallKeywords+0xfb) [0x55b06c52decb]
python((null)+0x530) [0x55b06c584ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x55b06c584ff0]
python((null)+0xfb) [0x55b06c52decb]
python(_PyFunction_FastCallKeywords+0xfb) [0x55b06c52decb]
python((null)+0x4aa1) [0x55b06c589561]
python(_PyEval_EvalFrameDefault+0x4aa1) [0x55b06c589561]
python((null)+0x10b) [0x55b06c4cb0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b06c4cb0eb]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x1d4) [0x55b06c4cb1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b06c4cb1b4]
python((null)+0x63) [0x55b06c4e2473]
python(_PyObject_Call_Prepend+0x63) [0x55b06c4e2473]
python(+0x17194a) [0x55b06c52694a]
python(PyObject_Call+0x6e) [0x55b06c4d719e]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0xab9) [0x55b06c4ca899]
python(_PyEval_EvalCodeWithName+0xab9) [0x55b06c4ca899]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x6e6) [0x55b06c5851a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x55b06c5851a6]
python((null)+0xab9) [0x55b06c4ca899]
python(_PyEval_EvalCodeWithName+0xab9) [0x55b06c4ca899]
python((null)+0x1d4) [0x55b06c4cb1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b06c4cb1b4]
python((null)+0x63) [0x55b06c4e2473]
python(_PyObject_Call_Prepend+0x63) [0x55b06c4e2473]
python(PyObject_Call+0x6e) [0x55b06c4d719e]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python((null)+0x1d4) [0x55b06c4cb1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b06c4cb1b4]
python((null)+0x63) [0x55b06c4e2473]
python(_PyObject_Call_Prepend+0x63) [0x55b06c4e2473]
python(PyObject_Call+0x6e) [0x55b06c4d719e]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x10b) [0x55b06c4cb0eb]
python(_PyFunction_FastCallDict+0x10b) [0x55b06c4cb0eb]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x6e6) [0x55b06c5851a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x55b06c5851a6]
python((null)+0xab9) [0x55b06c4ca899]
python(_PyEval_EvalCodeWithName+0xab9) [0x55b06c4ca899]
python((null)+0x1d4) [0x55b06c4cb1b4]
python(_PyFunction_FastCallDict+0x1d4) [0x55b06c4cb1b4]
python((null)+0x1f3f) [0x55b06c5869ff]
python(_PyEval_EvalFrameDefault+0x1f3f) [0x55b06c5869ff]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x530) [0x55b06c584ff0]
python(_PyEval_EvalFrameDefault+0x530) [0x55b06c584ff0]
python(+0x178d3b) [0x55b06c52dd3b]
python((null)+0x6e6) [0x55b06c5851a6]
python(_PyEval_EvalFrameDefault+0x6e6) [0x55b06c5851a6]
python((null)+0x5da) [0x55b06c4ca3ba]
python(_PyEval_EvalCodeWithName+0x5da) [0x55b06c4ca3ba]
python((null)+0x387) [0x55b06c52e157]
python(_PyFunction_FastCallKeywords+0x387) [0x55b06c52e157]
python((null)+0x4aa1) [0x55b06c589561]
python(_PyEval_EvalFrameDefault+0x4aa1) [0x55b06c589561]
python((null)+0x2f9) [0x55b06c4ca0d9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x55b06c4ca0d9]
python(PyEval_EvalCodeEx+0x44) [0x55b06c4cafa4]
python(PyEval_EvalCode+0x1c) [0x55b06c4cafcc]
python(+0x22f664) [0x55b06c5e4664]
python(PyRun_StringFlags+0x7d) [0x55b06c5ef77d]
python(PyRun_SimpleStringFlags+0x3f) [0x55b06c5ef7df]
python(+0x23a8dd) [0x55b06c5ef8dd]
python((null)+0x3c) [0x55b06c5efc4c]
python(_Py_UnixMain+0x3c) [0x55b06c5efc4c]
/lib64/libc.so.6((null)+0xf1) [0x7f17ff229401]
/lib64/libc.so.6(__libc_start_main+0xf1) [0x7f17ff229401]
python(+0x1df982) [0x55b06c594982]
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 139622 RUNNING AT ichiro.asiaa.sinica.edu.tw
= EXIT CODE: 139
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions


(K-T Lim) #2

That’s a very odd place to get a segmentation fault, as it’s doing standard C++ library manipulation of standard C++ strings (using a standard C++ map). Segfaults often occur because of a mismatch in versions between pieces of code. Are you sure that the libc you are using is the one the stack was built with? Are there other potential incompatibilities?


(Ying-Tung Chen) #3

Thanks, that’s is a good point to shooting this problem. I do remember that our administrator encountered some incompatible issues during installation. I will check the library with the administrator first.