Hi,
I’ve tried out both the binary and source installations on RHEL6-64, with gcc 4.9.2. The source installation fails during one of the obs_base unit tests (testCameraMapper.py), so I fell back to the binary install. Does the binary installation run the unit tests? While the binary installation completed, I went back and tried to run testCameraMapper.py which still fails in a similar fashion, though the output is more verbose. This leads me to believe that the unit tests are not executed during the binary installation. As a sanity check for a binary installation is there a way to systematically run the unit tests for all the packages - short of running them all by hand? I did a successful source installation at NERSC on cori with gcc 4.9.3. I also ran the obs_base testCameraMapper.py unit test by hand and it completed successfully.
Anyway, here is the error on RHEL6-64:
bash-4.1$ stack/current/Linux64/obs_base/14.0/tests/testCameraMapper.py
CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3
/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/miniconda3-4.2.12-7c8e67/Linux64/obs_base/14.0/python/lsst/obs/base/cameraMapper.py:247: ResourceWarning: unclosed file <_io.TextIOWrapper name='/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3' mode='r' encoding='ISO-8859-1'>
posixIfNoSql=(not parentRegistry))
CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/miniconda3-4.2.12-7c8e67/Linux64/obs_base/14.0/python/lsst/obs/base/cameraMapper.py:247: ResourceWarning: unclosed file <_io.TextIOWrapper name='/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3' mode='r' encoding='ISO-8859-1'>
posixIfNoSql=(not parentRegistry))
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/miniconda3-4.2.12-7c8e67/Linux64/obs_base/14.0/python/lsst/obs/base/cameraMapper.py:254: ResourceWarning: unclosed file <_io.TextIOWrapper name='/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3' mode='r' encoding='ISO-8859-1'>
"calibRegistryPath", calibStorage)
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
..CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
xCameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
daf.persistence.butler WARN: Passing an instantiated mapper into Butler.__init__ will prevent Butler from passing parentRegistry or repositoryCfg information to the mapper, which is done only at init time. It is better to pass a importable string or class object.
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/cfhtls.sqlite3
CameraMapper WARN: Unable to locate registry at policy path (also looked in root): tests/calibRegistry.sqlite3
CameraMapper INFO: Loading calib registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/calibRegistry.sqlite3
.CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/registry.sqlite3
.CameraMapper INFO: Loading Posix exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/ParentRegistryTestCase-fca2pq80/a
CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/ParentRegistryTestCase-fca2pq80/a/registry.sqlite3
/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/miniconda3-4.2.12-7c8e67/Linux64/obs_base/14.0/python/lsst/obs/base/cameraMapper.py:247: ResourceWarning: unclosed file <_io.TextIOWrapper name='/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/ParentRegistryTestCase-fca2pq80/a/registry.sqlite3' mode='r' encoding='ISO-8859-1'>
posixIfNoSql=(not parentRegistry))
CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/ParentRegistryTestCase-fca2pq80/a/registry.sqlite3
CameraMapper INFO: Loading exposure registry from /nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/ParentRegistryTestCase-fca2pq80/b/registry.sqlite3
/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/miniconda3-4.2.12-7c8e67/Linux64/obs_base/14.0/python/lsst/obs/base/cameraMapper.py:247: ResourceWarning: unclosed file <_io.TextIOWrapper name='/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/stack/current/Linux64/obs_base/14.0/tests/ParentRegistryTestCase-fca2pq80/b/registry.sqlite3' mode='r' encoding='ISO-8859-1'>
posixIfNoSql=(not parentRegistry))
E..
======================================================================
ERROR: test (__main__.ParentRegistryTestCase)
Verify that when the child repo does not have a registry it is assigned the registry from the
----------------------------------------------------------------------
Traceback (most recent call last):
File "stack/current/Linux64/obs_base/14.0/tests/testCameraMapper.py", line 403, in tearDown
shutil.rmtree(self.ROOT)
File "/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/python/miniconda3-4.2.12/lib/python3.5/shutil.py", line 474, in rmtree
_rmtree_safe_fd(fd, path, onerror)
File "/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/python/miniconda3-4.2.12/lib/python3.5/shutil.py", line 416, in _rmtree_safe_fd
onerror(os.rmdir, fullname, sys.exc_info())
File "/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/DMstack/v14_0/python/miniconda3-4.2.12/lib/python3.5/shutil.py", line 414, in _rmtree_safe_fd
os.rmdir(name, dir_fd=topfd)
OSError: [Errno 39] Directory not empty: 'b'
----------------------------------------------------------------------
Ran 24 tests in 8.351s
FAILED (errors=1, expected failures=1)